LOC103035797 (kcna1a,kcna1l,LOC108425346,LOC108279524,LOC105912431,LOC105913409)


Basic Information

Item Value
gene id LOC103035797
gene name kcna1a,kcna1l,LOC108425346,LOC108279524,LOC105912431,LOC105913409
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9685357 ~ 9693289 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237082.3
ctcctcTCCGCTCGTATGAAAAGCTGCAGTGTGCTTTTTCACATGTTCACGGAGCTCTTTCCCACTCGCGCAGCGTCCGTTCCTCCCACGCGCTTCCTTCCGTTCCCGTTCCACCACCACCGGCGGCTGCGTGTCCGCTGCGTCTCGGTTTGTccgcgttttttttttctggacgtCGACCAAAAGGCGCAAAGCTTCATTCTTTCTTAACCCCGTTTTTTTGCTGATGCGGCACCTCGACAGCTAATGCACCCCCTCctcctttcactctctctcactctctctctcagtccttCTCTCCAtcaccacaccaccaccactacaccacctccaccatcaTAATCAGCAGCAGcgcctctttcttttttccaccCTTCTTCGCGCAGATCAGCGGCTGAATTAAGGAATCAAGCATTGAAGAGCCTTGCGGTCGGACGGTAGCAGTAGCGGCACTTGGCAGAcctctaaaaaaataagattgaaGAAACCAAGCAGCAGAGGTCTAGCTGGTGGTGGTCACTTTCGTTTTTCCTCAACTGGCATCCTCCACATGATGGTAAACACACCCAGGTGCAGAGATTTACTCGGACACTGTCCGGTCGGACTGTGCGGGACAACAGTGGACAGTTAAAGGATACAGGTAGCTAATCCAGGCTTTGGTCATAGTGGTGGCTCCTATACCGCGATCACACTAAAGCCAAAGTTGGAGTACAGGCAAGGTTGCAGGACGCAGGACGAGATCCCCTTCTTTAAAAAGCCCAAACAGACCACCCCAGTGGTGAACGAAAAGAGGTGATGCAGCACTCTGCCGGAGATTGGAGATATGGACCGGTGGAAGGGTAAACACAGAGGAATCGGCACGACAAGCTCCCTTTCAATGGCAGCTTGATCCACAGACAGCGCAGCGAGGCGAGGAGCTGCATGAACACGCGCCCAACCCCAGCCTGTCCTGCGGCGCTGCTGGTGTGAGCTCCGCGATGACAGTGGTGGCAGGAGACCACTTGGACGAAAGCTCGGCTCTGGCGGGCCACCCACAGGAGTCCTATGCCGCCGAGCACGATGAGCACGAATGCTGTGAGCGCGTGGTCATCAACATATCCGGCTTGCGTTTTGAGACACAGCTCAAGACGCTTGCCCAGTTCCCAGACACGCTGCTGGGCAATCCCAAAAAGAGGATGAGGTACTTCGACCCATTGAGGAACGAGTACTTCTTTGACAGGAATCGTCCCAGCTTCGATGCCATCCTCTATTACTACCAGTCTGGAGGACGGCTGAGGAGACCTGTGAATGTTCCTTTGGATATGTTTTCAGAGGAAATAAAGTTTTACGAGCTTGGCGTAGAGGCCATGGAGAAGTTCAGGGAAGACGAGGGCTTCATCCGCGAGGAAGAGCGACCACTGCCAGAGAATGAGTTCCAGCGGCAAATCTGGCTCCTGTTCGAGCATCCTGAGAGCTCGGGTCCAGCACGCGGAATCGCCATTGTGTCCGTTATGGTCATTCTCATATCCATTGTCATATTTTGCTTGGAGACATTACCAGAGCTCAAGGAGGACCCTCAAGGAAGGTTACAAAAAGTAGGGAACACCACTATCTATTACAAACCAAATGTTCTCACAGACCCCTTCTTCATTGTGGAGACTCTCTGCATCATATGGTTCTCCTTTGAGTTGATTGTGAGATTCTTTGCATGCCCAAGTAAGGCAGCCTACTTTAAGAACATGATGAACACAATCGACGTGGTGGCCATCATACCATACTTTATCACGCTTGGCACAGAGCTAGCAGATGATTCAGAGGAAGGACAGGAACCAAAAGGAGGGGGAGAGCAGGCCACATCCCTGGCCATCCTCAGGGTCATCCGTCTGGTCAGGGTGTTCAGGATCTTCAAACTGTCGAGACACTCCAAAGGGCTGCAGATTTTGGGCCAGACCTTGAAGGCCAGTATGCGGGAGCTTGGCCTGCTTATCTTCTTTCTCTTCATTGGGGTCATCTTGTTCTCTAGTGCGGTGTACTTTGCTGAGGCAGAGGAGAAGGAGTCGTTTTTCACGAGCATCCCAGACGCCTTCTGGTGGGCAGTGGTCTCTATGACCACTGTGGGCTATGGGGACATGTACCCCGTGACCATTGGGGGCAAAATAGTAGGTTCCTTGTGCGCCATTGCTGGCGTGCTGACCATTGCGCTCCCAGTGCCCGTGATTGTGTCTAACTTCAACTACTTCTACCACAGAGAGACTGAAGGGGAGGAGCAGGCACAGCTCCTCAACGTGAGCAATCCCAACATTGCCACTGACTCCAGCTCTAGTCGGCGCAGTTCCTCTATCGTCAGCAAGTCGGAGTACGTAGAGATCGACGAGGACATGAACAACAGCATTGACAATTTTCGGGAGGCGAACCTGAGGACTGGGAACTGCACTGTCATGAACCAAAACTGTGTGAACAAGGGAAAGCTTCTAACAGATGTGTAATATTCCGGTTTCATCTTGACGAAGCATCTGCAGAGGCATCTCAACTGCACCCAGAGTGGTAACCATACCAGAATGCTTTATCTATGCAATGCGTTGTTGCATTGCATATGCTTTACCCTACATTTACAGCAAGGGATACTTCTACCGGCATTCAGCTTCATATAGATTGTCTAAAATATAGAAACTGTGGTTTCAaagattttattctataaaaatatGGGAGACTCCGTGACTGCAGTATCAACTTCGCatggaatttctttttttaatacaacaCACTGCGCACAGCATCCAGGAACGTGCATCAGGACCTTCTAGAGCATCTGCAGATACTGATATTAGTCTGCTTGTGGGAGCTATGCCATGCTACATCTTGAGCTCTGCTGAGCAGGTTAGATGCACCTTAATGTAACAGGAAAAGCATGGTTTCCAGTCCCTGCTCGATGGTTGACGGTTCTCGCTGGACAGGTGGCACTTTTGTGAAAGACATCTGCAATGCTGCTATTTCTCCCGCAGATGCTAGGACTTTTGCCCCATTAAGCCCAAAGCCATGTGAGGCGGCACATGGCTTTTGGGGGTTTTCTTATAAGCATGTTACAATAttctttggattttttttatatattggcATGCACAAACATTACCtcattaatttctttttctttttttcatttatttatgccCTCAGATTTTCTCTCATTTGGTTTCACCAAAAGTGCAAtggttattatttattgttcctggtatagattatttaaaaagcatttatgaGATGAATGTTTAATCTTAACGTTGGAGCAGTTAATTATGGAGATCGTGGCATGTCAACTATGAAGCATTGAGGCCTACTCGACTCAGGTACTGTGTATCCTGGTATAATTAGTGCATGACATCAGTATTAACAAATTGAGATAGGTTTACGTGTATTTGTAGATTAATGAAGGGATTTTTGCTGACTTTAATGACATATATTAACAAAGATATCTTAATACAAAGTTAACAAGGTATCGAGatgacattttgaaaaaatgtCAGTACACTCCAAACAGTATTACAGTATCTACAGCTACAGTTAACAGGATATGGAGGTGACAACCCACAGACTATTGTGATGGACAATTGCTAATTACGAGTTGTAAATGATGCATCCAATGTTTAAAGGTACactaattaagtttttttttttcctttgctaaaacaagctaactttaataatacaaagaaaGGAAAATTCTCATTTCATGTATTTTGTAATGCTTGCAAATCATTCATGACTTTACAgcatatttacttttaaatacattcaaatcTAGAGTATTGCTGCCTCCCATTTGAACTCGGATGTCAGAATTTCCAGCAAAGAGATAGTTTCAAGTAGAAAATTTTAATTGAAATGCCCCTAAAAGTCAGATTTCCTATTCAGAAAGGTTGGAGagcctaaaaaaaaatccaaaatggctgttgcacaCATCAACAGTTTGAATGCACAAAATTAGAGCTAATCTTACTGTTAActagcaatgctaacctggggcAAAGCTAACACTGATAATCGGAAAGGAGAACAGAACATATTTTGGTTGGATTTgccaaaaacacattattattagaCAGTTTTAACAGGAACGCTGTGGATTTGAGCTTGTTATCAGTCCAAACTCAGAAATTCAACTTCCGAGGTGAATGGAACGTAGCATAAGTTCACAACAATGAGAAAAATATTACTTAGTGTATCTTTAACTTTTAAATTCAACATCTACATTATAGAagatacacatatatttaacccTCTGTTTGTGTTCGCGTATAGTGCCTTTAACCCTCGAACTGACAGAACTGTTAAAAGTGCCTCCATGTACAATAGCATCAATTTTACTGTGCAGCTCCTTTTAACCTACTGTATGATGCATAGTCCAGGACCCATCCGAGTATCATTTGGACTGTCGTAGTCAGAAGATGCACATAAACATAAAGACAGTTGGAGTATGTCTGCTGGTGTATAGTAGAATACTCTAGAATGGAGGGAGTTTGTCCTGTGGCCTCAGTGCACAGAAAGTGGTGACATATTGATTGGAAAACTGTTGGGAATTGTTGGAAAAGACAAACGAAGAAAAAGCAGGAACAAAGTGGGATATTGGTGTAGGATGTTTCAGGAACTGCCCCTTCAAATCCTTGTATATAAacctcagtaaatgactcaaatgaTCTCCAAAAACAGATAATTACCATTGTACAGAGAATAATTAGAAATATCTATTTTTCATCTCTTTTGCTGtccattgttttaattttttgacttagataatttttttttgcttcatcaTGTCATACCATAATAAGCCTTTTTATGTGTTTGTCTACCTCAGTGTGGTCACGTATGGAGTGTTTGTGAAACCCAGAAGCTTAACATCCTGCTAGGCATTCCCCCAAGGTCAAGAACCACACAGTGTTTTGCACAGAAAATCAATACAGAACCTGAACAAAAGTGCtggaaatggattttaaagaagaacacattgttgctgtccaaagaacaacaaaaaacaaaatatcaccTTAAAattaaaaggggaaaaaaacatgttaacttCCAGTTAGCGCTGTCACAATagctactttttaaaaataatatagtcCCAGTGATAAATTGTGAAAAACTTATTGcgatattattgtaattttaatgccactgatacataaaaataaaaataataaaaatatgataaaagcataataatgcaaGCATGCCCTTTAAAAGAGCAATGAAATTTTAACTACTGAAAATATTTCCATATTGCATATGGAATATAAAAACATAGCAGCTCATTCATTCGCTGGATTTTTGCATTCCATTTAGGGAATGTAATCTGGAATGCATCTAAAAGTTGGATTTTAAACTCTGAAACTGGTATGGTatagaatccaagatggctgcatcACCAGAAGTAAAAACAGTAGTATTACACAGTTTATCAGCGCTTCTCTCTATCTATGTGTTATTAAATCAGTCAgacacacagtactgtccatCTTCTACATGTGGACATGTTTTCAGGATGTTGTTATAATGCGTTAAGAACAATTCTACGTGACACAGTGCTAGCAATAGTAACATGGGTAAACATGAGGTAAAAAGTGGGACATTATTTGTTTTGATGAGAAATGGGTAATTGACTGTCAAATTACTAGGGGCAAATTCCATATTCTTTAACCTAGTTAAAGAAATACCACCTCATTCATGGTAATGGGCTCACCTCTCTGAGAAAAATCTAATGGGCAGTAGGTCTTGtaattatatactgtaattaattaatgcaaTTACAGACAGTCCTACTTCcagtgtaaattaatgtgaCAAGTttttattccaagtaattttaGACATTTATCATAAAATTTCCACACAATATTGCTGTGCTCAAACAtcaaactaaaaatcgacacaAATGTAGATACgtgtttttctttggacagccACCACATGCACAGTCTACTGTATAACAGCTAGTTTGCTCTAAATGAAAGTACTGAAACACAACTGGAAGGAAATGAGAGATATTTATCAGTATTATACAGATTGAAAAGCAGAAATGAACAGGACATATGAAAGGCtacattttttatactttaaaagaaCACTGGCAGAATTATCCACTTACTGCCCAGACCAAATATATAGGTAGGGCCTATATTTATCCGCTTAAATAGTAAACAAACTGAGAATCTGGGAAACTAACCAGTCTTTTAAACTCTATTAAGAACAGTGATACAGTATTATAGCCTATAGTTATAATGCGTGTTGGACTTTTTTGACCTTCCGTTAATTTTTGGGTTCTTACAAGTACAACTGATAGCTTTAAGATCTACTGcaaaggaaaaaatacaaactGCTATGgagattaaaaatattttgtagatttgaattaaatgtatctgaatttagaattttaaaaatgctttttggtgtttttaactTGTGAGGAGGAGAAATTTGTTCACAACTaacaatttttacatttaaaaaaaattcagatccACAAATtcttcagataaaaaaaacatctgataaATCCTGATTTTTATGAAAACCTTAAGTTATGTTGAAAGCACATTTTACCATCTCAAAAGTGCACTCCCAAAAAAGCATTGTTAGAATTCAAAATCAGgcaaatttaattaaaacaataatacaaaattcatattaaaatacTTACATCACATTTTAGGCTccataaactacaaacaaattcttgataaaaaaaaataaaaacaaatgttactAGAAGTACTTTGTAAGTAGGATTatgggtttttaaacacagcttaaaatattcaaataaaaagatgagtaacaaaaaaaatttaaaagcatgaaaaaagaaattattGGGCTATTTCAGAAGATCCCGGGATAGCATATCCCAACGCTGATTTGTACCATAAGCATGATCTGTACATTTCCATATCAGAGTAACACCTTTAACTTAAGAGTAGGTAAaatttaaaatctatatatatatgtatcatttTTATAAATCATGGTAACTGATCCAGGGGACCAAAAAtaaatctctttttctccctttaCAGTGTGTAAAACATTACTGACATACTAGAAAACTAATAAATCAACTAATATACCAGGATATGAACATGCGAGAgaagtgaaaaaataaacaaacaaaacaaaaagactgTGATCACTTCTAGAGATATTCCTCattaaatgacattttattgAC

Function

symbol description
kcna1a Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in several cellular components, including dendrite; main axon; and neuronal cell body. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; hindbrain; opercular flap; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in episodic ataxia type 1. Orthologous to human KCNA1 (potassium voltage-gated channel subfamily A member 1).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily A member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237082.3 True 7207 mRNA 0.40 2 9685357 9693289

Neighbor

gene id symbol gene type direction distance location
LOC103035489 LOC108425317,LOC107562148,LOC107741714,LOC107687569 coding upstream 46077 9618666 ~ 9639280 (+)
phf21b phf21b coding upstream 262076 9293820 ~ 9423281 (+)
kiaa0930 kiaa0930,zgc:172139,LOC102798964 coding upstream 438693 9196132 ~ 9246664 (+)
LOC103042395 LOC108425352,LOC108425356,LOC103363517,LOC107719870,LOC107699203,LOC104927640 coding upstream 516510 9056423 ~ 9168847 (+)
LOC103045143 LOC108425356,LOC108425352,LOC108280014,LOC103363517,LOC107719870,LOC104927640,LOC107699203 coding upstream 802661 8789355 ~ 8882696 (+)
LOC103038615 LOC108425345,LOC108279527,LOC107741715,LOC107601000 coding downstream 87182 9780471 ~ 9783136 (+)
LOC103036813 akr1d1,LOC108425343,LOC104966316,LOC107383989 coding downstream 195928 9889217 ~ 9898004 (+)
LOC103038308 kdm5a coding downstream 207196 9900485 ~ 9925895 (+)
usp15 usp15 coding downstream 236219 9929508 ~ 9967291 (+)
il17rel NA coding downstream 348914 10042203 ~ 10070882 (+)
G63050 NA non-coding upstream 40846 9642481 ~ 9644511 (+)
G63047 NA non-coding upstream 150526 9534573 ~ 9534831 (+)
G63044 NA non-coding upstream 184663 9500304 ~ 9500694 (+)
G63027 NA non-coding upstream 202829 9482262 ~ 9482528 (+)
G63022 arhgap8 non-coding upstream 225669 9433659 ~ 9459688 (+)
G63067 NA non-coding downstream 117583 9810872 ~ 9866501 (+)
G63081 LOC108279889 non-coding downstream 188826 9882115 ~ 9884275 (+)
G63090 NA non-coding downstream 278963 9972252 ~ 9976111 (+)
G63091 NA non-coding downstream 287229 9980518 ~ 9984728 (+)
G63093 ppm1h,LOC108279434,LOC101061494,LOC105896948,LOC106575999 non-coding downstream 298469 9991758 ~ 9998972 (+)
G63051 NA other upstream 35270 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 244793 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 1145234 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 1270318 8401840 ~ 8415039 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 2829595 6851230 ~ 6855762 (+)
G63432 NA other downstream 2774761 12468050 ~ 12468902 (+)
LOC111192955 NA other downstream 3462937 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 4473940 14167229 ~ 14242234 (+)
G64015 NA other downstream 5051446 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 6702037 16395326 ~ 16426623 (+)

Expression


Co-expression Network