rab21 (rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748)


Basic Information

Item Value
gene id rab21
gene name rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21932769 ~ 21956278 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237355.3
CTCGAAACTCCTGCTTGTCATATGATTTCTAGTGTGTGACGTAGCAGAGGACGCCATTAGCCTGGGCCGCAGACAGGAGGGAGATATACCTCCATATTTCGGTGTTTTCGCCGGTTTGGAGGCTCGTCACCCCTCGTTCTCCGTTCAGGCAGGTGTCTGATGTGAGCCCGCGGGAGGAGAGCGGCCGGTTTTCCTCTGTCTGAGCTGAAGACGAGCTTCTTCTTTCGCCATGGCGGCTGGCGGAGCAGCAGGCAGCAACAAAACATACTCCTTCAAGGTGGTTTTATTGGGGGAGGGCTGTGTCGGCAAGACCTCGCTGGTGCTTCGCTACTGTGAAAACAAATTCAACGACAAGCACATCACCACCCTGCAGgCATCATTCCTtacaaagaaactcaacatcACAGGCAAGAGAGTCAATCTGGCTATTTGGGACACGGCTGGACAGGAGCGGTTTCATGCTCTTGGGCCAATCTACTACAGAGACTCCAACGGAGCCATTCTGGTGTATGACATCACAGATGAAGACTCTTTTCAGAAGGTGAAAAACTGGGTCAAAGAATTAAGGAAAATGTTGGGGAATGACATATGTTTATGTATAGTAGGTAATAAAATAGATCTGGATAAAGAGAGGCATGTATCAGTGGAAGAGGCTGAGGGGTATGCAGAGTCTGTTGGGGCAAAACACTATCACACATCAGCTAAATTAAACAAAGGAATTGAAGAATTGTTCCTTGACCTGTGTAAAAGAATGATGGAGACAGCACAATTGGAGGAGAGATCGAAGGGGAATGGAGCAAGTCATGCAAACACAGGGCGTAGAGGCGTTCAGATCATCGACGATGAGCCCCAGGCTGCTACTGCTGCAGCTGGCTGCTGTTCATCAGGCTAGGATATTttcccactctttctctcttttgtccttctctctcgctctatttCAAACCcattctctgtctttctctctttttgtgtttCCTCTCCCTTCAAAAAAGACTGCCACTCTTCATCCTCCGCTGGTTGTCTGCTTGAAGTCGTTCACTTCAGCAGATTTATTTCTCAGTGCTTCATCTGTTTGGAAAGCTGCTGGAGCTAGTGGACACTCAGTCTGATGCCAAATGCCAAAGGCCATCCCCTGccgtaaacacacacattttctctcACTGACTCTTTAATAGCACACTGTTCTTACAGTCTGATGATTCCTGTTCTTTTGCGAGGATGTTGAACATGATGGATTGTTGTGCAGAATTTTCTTTTAGTTAAAAGATGATTATTAAATAACTTAAACATGTA
>XM_022671525.1
GTCCCCTTCTCGAAACTCCTGCTTGTCATATGATTTCTAGTGTGTGACGTAGCAGAGGACGCCATTAGCCTGGGCCGCAGACAGGAGGGAGATATACCTCCATATTTCGGTGTTTTCGCCGGTTTGGAGGCTCGTCACCCCTCGTTCTCCGTTCAGGCAGGTGTCTGATGTGAGCCCGCGGGAGGAGAGCGGCCGGTTTTCCTCTGTCTGAGCTGAAGACGAGCTTCTTCTTTCGCCATGGCGGCTGGCGGAGCAGCAGGCAGCAACAAAACATACTCCTTCAAGGTGGTTTTATTGGGGGAGGGCTGTGTCGGCAAGACCTCGCTGGTGCTTCGCTACTGTGAAAACAAATTCAACGACAAGCACATCACCACCCTGCAGGACACGGCTGGACAGGAGCGGTTTCATGCTCTTGGGCCAATCTACTACAGAGACTCCAACGGAGCCATTCTGGTGTATGACATCACAGATGAAGACTCTTTTCAGAAGGTGAAAAACTGGGTCAAAGAATTAAGGAAAATGTTGGGGAATGACATATGTTTATGTATAGTAGGTAATAAAATAGATCTGGATAAAGAGAGGCATGTATCAGTGGAAGAGGCTGAGGGGTATGCAGAGTCTGTTGGGGCAAAACACTATCACACATCAGCTAAATTAAACAAAGGAATTGAAGAATTGTTCCTTGACCTGTGTAAAAGAATGATGGAGACAGCACAATTGGAGGAGAGATCGAAGGGGAATGGAGCAAGTCATGCAAACACAGGGCGTAGAGGCGTTCAGATCATCGACGATGAGCCCCAGGCTGCTACTGCTGCAGCTGGCTGCTGTTCATCAGGCTAGGATATTttcccactctttctctcttttgtccttctctctcgctctatttCAAACCcattctctgtctttctctctttttgtgtttCCTCTCCCTTCAAAAAAGACTGCCACTCTTCATCCTCCGCTGGTTGTCTGCTTGAAGTCGTTCACTTCAGCAGATTTATTTCTCAGTGCTTCATCTGTTTGGAAAGCTGCTGGAGCTAGTGGACACTCAGTCTGATGCCAAATGCCAAAGGCCATCCCCTGccgtaaacacacacattttctctcACTGACTCTTTAATAGCACACTGTTCTTACAGTCTGATGATTCCTGTTCTTTTGCGAGGATGTTGAACATGATGGATTGTTGTGCAGAATTTTCTTTTAGTTAAAAGATGATTATTAAATAACTTAAACATGTA

Function

symbol description
rab21 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within Rab protein signal transduction and protein transport. Predicted to be located in several cellular components, including bounding membrane of organelle; cleavage furrow; and endoplasmic reticulum membrane. Predicted to be active in early endosome. Orthologous to human RAB21 (RAB21, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-21

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07890 RAB21; Ras-related protein Rab-21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237355.3 True 1296 mRNA 0.47 7 21932777 21956278
XM_022671525.1 False 1244 mRNA 0.47 6 21932769 21956278

Neighbor

gene id symbol gene type direction distance location
tmem19 tmem19,LOC107719866,LOC107687559 coding upstream 21192 21905259 ~ 21911577 (+)
msgn1 NA coding upstream 215821 21715452 ~ 21716948 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 494559 21410849 ~ 21438210 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 1337468 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 1435108 20417512 ~ 20497661 (+)
ptprr ptprr coding downstream 37832 21994110 ~ 22100636 (+)
LOC103042836 NA coding downstream 148562 22104840 ~ 22161850 (+)
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding downstream 224925 22181203 ~ 22243904 (+)
dus4l dus4l coding downstream 318363 22274641 ~ 22278022 (+)
bcap29 bcap29 coding downstream 328469 22284747 ~ 22297679 (+)
G65840 NA non-coding upstream 112184 21820379 ~ 21820585 (+)
G65838 NA non-coding upstream 114522 21815536 ~ 21818247 (+)
G65834 NA non-coding upstream 121150 21811046 ~ 21811619 (+)
G65832 NA non-coding upstream 125558 21806164 ~ 21807211 (+)
G65831 NA non-coding upstream 126724 21805312 ~ 21806045 (+)
G65875 NA non-coding downstream 2048 21958326 ~ 21958687 (+)
G65873 NA non-coding downstream 2937 21959215 ~ 21962445 (+)
G65874 NA non-coding downstream 13231 21969509 ~ 21970077 (+)
G65882 NA non-coding downstream 32967 21989245 ~ 21989543 (+)
G65910 NA non-coding downstream 135911 22092189 ~ 22092675 (+)
gen1 gen1 other upstream 217332 21629787 ~ 21715437 (+)
agbl5 NA other upstream 383607 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 908195 21024175 ~ 21024574 (+)
G65565 NA other upstream 975134 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 2138444 19780663 ~ 19794325 (+)
ccdc167 NA other downstream 983277 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1043092 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1174802 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1266236 23222514 ~ 23323361 (+)
G66296 NA other downstream 1487896 23444174 ~ 23444677 (+)

Expression


Co-expression Network