LOC103040999 (LOC103040999)


Basic Information

Item Value
gene id LOC103040999
gene name LOC103040999
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21965977 ~ 21970642 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237356.3
TGATTCTACACAGTTTACTGGAAGACCAGCCCCAAATACAGGAGAAGTTCAGCCCACTTCCTCCTGGCCTTTTCAGTGGAGGAGCTAAGCGACCGCCTGTCACTTCAACTTCACTTTTAGTTTACATTCCGTCAGAAGAGCAGCTGCGAAAATGTCGAAGATCAACCTGTGTTTCAAGAGGATTTTTGTCTTCTTTAACGTGCTTTTTGCGATACTGGGGGCTCTGATTCTGAGCTTGGGCTTGTTGGCACATGTCCAGCTGCATGAGGCGGGGGGGAACAAGCTGACTGGAGTCATTGTGTTGGTGGTTGTTGGGTTTGTCATCTTCATCCTCTCAGTTCTGGGAGCTTATGGAGCTCAGAAAGAGAACAGAAACGTTCTTATTGCGTTTTTTGTCATCATGTGTATGGGGACCATCTCTCTTTTCCGCATGGCCGTTCAAATCGCCATCTCCCGGGAACAGgtGATTTCGGAGTTCCAGAAGTTAGGCCATTTGGATCAAGCTGACTCAGATATAAAGAATACCATGGAGTTACTTCAACTAAATGCCAAGTGCTGTGGACTCTTTAATGGCTACAAGGACTGGGGGAATGAAGTTCCTACTTCGTGTAATTGTGAAGACACCAAGCATGATCGATGCCAGGTCTACAGCAGTGATGAAAACCAGGGCGTCTTCTCACAGCCATGTGGCCCCATAATCCTGGGATATTTGAATACAGCTCTGAACATCACCCTTGGTGCATTCATTGGTTTCGGTGTTCTATCTTTGTTAGCAGCTGTGATGTCCCTGGTGATGATTATCCGTATTACTGCTCCCACTGTCAGCCCTCCAGCCATCTTCGATCTCAACTATAAACCACCAAAGTACTCTGAGCTTGTGCCATCTGCCTAGTCAATGCAGTGTGCTCTCTGAGGTCTGTTTCATTATTAAGCATTTAGCCCCAAAGAGCTGAGGTTGATTTGATTGTAACAAACTGCACTTACGTTATCTTTGACACAACAACCTGTTCTTTTCAGCTGAAAGATCGGCTTGTGTTTACATGACAGTCATATTATTCTATATTCTTACCTGGTTTAAAGCTTTAGTTTTGATACCTGTTTGCTCTGATACCTGTTCACTGAGACTAAATCATCATACACATTGGTCACATCAGATTTTCTAGTCAAGAGAGAATGTGTCAATATATTTCCAGCACTTAACTGTTTTTATACATACTGTGTAATGGTGTGACTGTAATAATGAgcagtttctacaataaatgtTACAATAACCA

Function

NR:

description
tetraspanin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237356.3 True 1274 mRNA 0.43 9 21965977 21970642

Neighbor

gene id symbol gene type direction distance location
LOC103040407 NA coding downstream 88275 21823896 ~ 21877702 (-)
mrps10 NA coding downstream 147829 21809285 ~ 21818148 (-)
LOC103044186 NA coding downstream 579518 21374232 ~ 21386459 (-)
nav3 nav3 coding downstream 609469 20983152 ~ 21356508 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 1155266 20522855 ~ 20810711 (-)
LOC111192879 NA coding upstream 18613 21989255 ~ 21990070 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 278245 22248887 ~ 22273098 (-)
LOC103043373 LOC108435080,LOC108279430,LOC107729145,LOC107656392,LOC107590530,LOC107583931,LOC107708018,LOC107658953 coding upstream 334563 22305205 ~ 22352523 (-)
pde3a pde3a,LOC107707962 coding upstream 392512 22363154 ~ 22401341 (-)
ada2 cecr1,LOC108442796 coding upstream 940545 22911187 ~ 22930186 (-)
G65963 NA non-coding downstream 281 21964958 ~ 21965696 (-)
G65950 NA non-coding downstream 4871 21959297 ~ 21961106 (-)
G65949 NA non-coding downstream 7059 21957494 ~ 21958918 (-)
G65948 rab21,zgc:154045,LOC106609839,LOC107690748,LOC107687573 non-coding downstream 9708 21932824 ~ 21956269 (-)
G65962 NA non-coding downstream 12026 21952379 ~ 21953951 (-)
G66004 NA non-coding upstream 160446 22131088 ~ 22131593 (-)
G66022 NA non-coding upstream 191029 22161671 ~ 22162400 (-)
G66052 NA non-coding upstream 308455 22279097 ~ 22279414 (-)
G66080 bcap29 non-coding upstream 322455 22293097 ~ 22298282 (-)
G66074 NA non-coding upstream 328839 22299481 ~ 22361569 (-)
G65803 gen1 other downstream 281149 21629958 ~ 21684828 (-)
ost4 NA other downstream 391778 21545418 ~ 21574199 (-)
llph llph other downstream 2166375 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2360252 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2595269 19305987 ~ 19370708 (-)
G66081 bcap29 other upstream 320043 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1082631 23053273 ~ 23160179 (-)
G66619 NA other upstream 2537192 24507834 ~ 24508281 (-)
G66642 NA other upstream 2689382 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3545873 25516515 ~ 25530980 (-)

Expression


Co-expression Network