LOC103027149 (LOC103027149)


Basic Information

Item Value
gene id LOC103027149
gene name LOC103027149
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16654113 ~ 16660507 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237943.3
ATGGCCTCCAGTCTGTCTGTTTCTGACGAGGGTATGATCTGCTCTATctgttatttagtgtttaatgatCCCGTGGCTCTGAAGTGCAGTCACAGTTTCTGTGAGGAGTGTCTGCGGCGCTACTGGAGTGTTCAGGAGGTGCTGCTGTGTCCTGACTGTAGGAAAGAGTGCTCTCAGGACGAGCCCACCCGGAGCCTGGCCTTCTCCAGCCTGTGTGAGAAGTTTAAGAGCAGAACCTGTCTGTCTCCAGTAGGAGACATGTGCCCTGAGCACGAGGAGAAGCTCAAACTCTTCTGCTTTGAAGATAAGCAGCCCATCTGTGTGGTGTGTTACACTTCAAAGAAGCATAAAAATCACCAGTGTGCTCCTCTTGTGGAGGCGGTAGAGGACCTGAAGGCAGAAGTGAAGTCTGAGGTGTCTGGTATGCTGCAGAACCTTCAAATCTTGAATAAATCTAAAGCAGATTATGAAGACCTGGCAGAGATTTTAAAGGAAGAGCGGCAGAGTGCGGAGAACATGATCAGGCAGGAGTTTGACAGTCTTCATCAGTACCtcaaagaggaagaggaggccAGGATTGCTgccctgagagaggaagaggtgCAGAAATATGAGAAAACCAAAAACAGGATTGAGAAGTTGTCAAATGACATCTCAAACCTCTCCATGACTCTAAAAATGATCAACCAGGAGATGGAAATGGATGAGCTCACTTTCCTCAAGAACTACACCAATGGCCACTATAGTCCAGCCAAGAACAGCCTGCCCGAACCTGACGTGATCTCAGGAATAGATACAGCAAAACATTTGGCATTCTTGAACATCAATTTACGGGCAAAGATGTGTGAACTGCTGCATGACCCTCCCAAAACAGTGTCCCTGGACCCCAATACGGCCTCCAACAAGCTGGTGGTGTCTGAGGACCGGAGCAGTGTGTATTTTGTGGAGCAGAAGCTGGAGGTGGCCAATAATCCCGAGAGATTCATGTTGGGAGTGCTGGGCTCTCAGGGCATCAGCTCTGGCCTGCACTGCTGGGACGTGGAGGTGGGAGACAATGACCACTGGACCATAGGAGTGGTCAAGCAGTCTGTGGAGAGGAAGAAAATTCTGAAGATGGATCCCTCCAGTGGAATGTGGAGCATTCGCTTGATCAATGGAAAATACCGGGCTGGAAAGTCCCGCAAGGATCTCACGGTAACAGAGAAGCCGCGGGTCATCAGAGTTCAGCTGGACTACGATAATGGAGTCATCGCATTCTCAGACCCCTCCAAAGGACCCGTTCTGTTCACCTTCACGGACACATTTGAAGAAGCTCTATTTCCTTACTTTAATACTGCAAGTGCTGTCTGCCCACTGCACATCTCCTAACATGCAGGACTAATTTTTACACATGCTGCAAGGTTGTAAATGACCACAAGATGGCATCATCCTCACAGACAAGTCCTGATGTAAGAAATGATTTcagaatcattttaaaactcATCAATTGTTTGATGCTGTGTGATTgcttaaacactttaaaatcatCTCGATTGTGTCATCTTTTCCTAAACTttgttattaaaacaatatCTATCTGCCCCAGTGCTCCTTGAACTTGTCCTCAGGAACACCATCCATCTATGACTACTAACACACTGCTAAAATAAGGACAATGTGATTGATTGTCTTTCAAGGGTGTTTTGAGAACCACTGTCCTACACATTTACTACACTTTAATTTTAGTATTATGCTGatttagaggtgtgccatatattATAGTACGCAATtatatcgcaaaaataccctgaaatattgtcatattattttagggccacatGGGACATCAggatacaacttttttttttagcaaaaggaaaatccaccctgttctcattttcctttAAATATCTTCTAGAGACagatatctgtt

Function

NR:

description
nuclear factor 7, ovary-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237943.3 True 1912 mRNA 0.45 6 16654113 16660507

Neighbor

gene id symbol gene type direction distance location
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding downstream 76297 16529205 ~ 16577816 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding downstream 184756 16459740 ~ 16469357 (-)
scaf11 NA coding downstream 203347 16431300 ~ 16450766 (-)
LOC111192960 NA coding downstream 302400 16347559 ~ 16351713 (-)
akap14 NA coding downstream 726842 15925546 ~ 15927271 (-)
LOC111192875 LOC108437882 coding upstream 35574 16696081 ~ 16707075 (-)
LOC103039070 NA coding upstream 235073 16895580 ~ 16945665 (-)
LOC103042974 LOC108437161 coding upstream 385007 17045514 ~ 17096825 (-)
cep112 cep112 coding upstream 442788 17103295 ~ 17307076 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 1060622 17721129 ~ 17731699 (-)
G64418 zmp:0000000711,LOC108411497 non-coding downstream 5491 16646178 ~ 16648622 (-)
G64382 NA non-coding downstream 139245 16508936 ~ 16514868 (-)
G64380 NA non-coding downstream 164182 16489509 ~ 16489931 (-)
G64321 NA non-coding downstream 285723 16312131 ~ 16368390 (-)
G64320 pdzrn4,LOC107757222,LOC107581937,LOC107694264,LOC107725536,LOC107587183 non-coding downstream 360145 16293718 ~ 16293968 (-)
G64422 NA non-coding upstream 4514 16665021 ~ 16667239 (-)
LOC111192962 NA non-coding upstream 51566 16712073 ~ 16714049 (-)
G64479 NA non-coding upstream 102703 16763210 ~ 16766262 (-)
G64485 NA non-coding upstream 144054 16804561 ~ 16890783 (-)
G64491 NA non-coding upstream 217109 16877616 ~ 16892465 (-)
G64387 NA other downstream 68466 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 786318 15671306 ~ 15867795 (-)
G64060 NA other downstream 1659281 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1661383 14990229 ~ 14992730 (-)
G64034 NA other downstream 1867964 14785321 ~ 14786149 (-)
G64492 NA other upstream 221828 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 874789 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 1018307 17678814 ~ 17689312 (-)
G64886 NA other upstream 1268000 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 1964368 18624875 ~ 18712520 (-)

Expression


Co-expression Network