dus4l (dus4l)


Basic Information

Item Value
gene id dus4l
gene name dus4l
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22274641 ~ 22278022 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238165.3
ATCTGTAACCCGCAGAAGATTACGTAGTTAGTGCACTAGATAGGGAGTAGGGGGGGTACTGTACAGAAGAATTAGACAGTACCGCGGCCACATGCCCGGCAGGATccggtaaaataaagtaaattaggAAGGAACCGGGCCGGGCAGATCCGCGCGGCTTCAGTTTCAGCCCCTGGGGGAAACTGCGAGAGTTAACAGAACGCCAGCGCGAGCTGTGGAAAAAGACGAGGGCGAGCAGGCTGTGGATGTTTCGGTCCTGTGTCTACTCTTAAAGCCTCTCCATGGACCTGTTCGAGAATGGAAAAGTTGTTAGAGTTTGTGCTCCAATGGTACGGTACTCAAAACTGTCTTTCAGATCTCTGGTGAGAAAATATGAATGTGACATGTGCTACACGCCTATGATAGTTGCTGCTGATTTCATGCGTTCTGTCAAAGCCAGAGATAGTGAATTCACCACTAACAACTCTGACCGACCGTTAATCATCCAGTTTGCCGCTAAAGATGCCCAGACACTGGCAGATGCTGCATGTGTAGTTGCGCCTTTCTCTGATGGAGTGGATCTAAATTGCGGATGCCCTCAAAGATGGGCTATGGCAGAAGGCTATGGGGCATGCTTGATTAATAAACCACAACTAGTAAAAGACATGGTGAGACATGTGAAAAACCAAATAGACAATCCCAACTATGCAGTATCCATCAAAATAAGAATTCACAAGGATGTGAGGAAGACCGTGGACCTTTGTCAGAAGGCCGAGGCTGCAGGAGTGTCATGGATCACAGTTCATGGGCGGACAGCCTTAGAGAGGCATCAACCAGTGCATTACAACGCAATAAAAACTATTAAGGATAGTCTTTCTATCCCAGTCATTGCCAATGGAGATATCAAAAACGTTCAAGATGTGGAGTCCATATATGAACTTACAGGGGTGGATGgaGTGATGTCTGCTCGAGGACTGCTGGCCAATCCTGCACTGTTTGCTGGCTATGAATATACCCccttgaagtgtgtgtgggacTGGGTAGACATTGCCTTGGAACAGGGGACTCCCTTTACTTGCTTTCACCAGCATCTTATTTACATGTTAGAACGCATCACTTCCCAGCCTGAGAGGAAAATCTTCAACAGTTTGTCAAGTATATCTGCAGTCACTGACTACTTGCTCCATTGCTATGGACCAGTATAGTTATCAGAATTTAGATTCTGATtatcccccccccctccccccacatttttttttgtattgatttttatttaaaataaagtgag
>XM_007238166.3
GAAGATTACGTAGTTAGTGCACTAGATAGGGAGTAGGGGGGGTACTGTACAGAAGAATTAGACAGTACCGCGGCCACATGCCCGGCAGGATccggtaaaataaagtaaattaggAAGGAACCGGGCCGGGCAGATCCGCGCGGCTTCAGTTTCAGCCCCTGGGGGAAACTGCGAGAGTTAACAGAACGCCAGCGCGAGCTGTGGAAAAAGACGAGGGCGAGCAGGCTGTGGATGTTTCGGTCCTGTGTCTACTCTTAAAGCCTCTCCATGGACCTGTTCGAGAATGGAAAAGTTGTTAGAGTTTGTGCTCCAATGACTGTCTTTCAGATCTCTGGTGAGAAAATATGAATGTGACATGTGCTACACGCCTATGATAGTTGCTGCTGATTTCATGCGTTCTGTCAAAGCCAGAGATAGTGAATTCACCACTAACAACTCTGACCGACCGTTAATCATCCAGTTTGCCGCTAAAGATGCCCAGACACTGGCAGATGCTGCATGTGTAGTTGCGCCTTTCTCTGATGGAGTGGATCTAAATTGCGGATGCCCTCAAAGATGGGCTATGGCAGAAGGCTATGGGGCATGCTTGATTAATAAACCACAACTAGTAAAAGACATGGTGAGACATGTGAAAAACCAAATAGACAATCCCAACTATGCAGTATCCATCAAAATAAGAATTCACAAGGATGTGAGGAAGACCGTGGACCTTTGTCAGAAGGCCGAGGCTGCAGGAGTGTCATGGATCACAGTTCATGGGCGGACAGCCTTAGAGAGGCATCAACCAGTGCATTACAACGCAATAAAAACTATTAAGGATAGTCTTTCTATCCCAGTCATTGCCAATGGAGATATCAAAAACGTTCAAGATGTGGAGTCCATATATGAACTTACAGGGGTGGATGgaGTGATGTCTGCTCGAGGACTGCTGGCCAATCCTGCACTGTTTGCTGGCTATGAATATACCCccttgaagtgtgtgtgggacTGGGTAGACATTGCCTTGGAACAGGGGACTCCCTTTACTTGCTTTCACCAGCATCTTATTTACATGTTAGAACGCATCACTTCCCAGCCTGAGAGGAAAATCTTCAACAGTTTGTCAAGTATATCTGCAGTCACTGACTACTTGCTCCATTGCTATGGACCAGTATAGTTATCAGAATTTAGATTCTGATtatcccccccccctccccccacatttttttttgtattgatttttatttaaaataaagtgag
>XM_022671528.1
CGCACCGGATCTGTAACCCGCAGAAGATTACGTAGTTAGTGCACTAGATAGGGAGTAGGGGGGGTACTGTACAGAAGAATTAGACAGTACCGCGGCCACATGCCCGGCAGGATccggtaaaataaagtaaattaggAAGGAACCGGGCCGGGCAGATCCGCGCGGCTTCAGTTTCAGCCCCTGGGGGAAACTGCGAGAGTTAACAGAACGCCAGCGCGAGCTGTGGAAAAAGACGAGGGCGAGCAGGCTGTGGATGTTTCGGTCCTGTGTCTACTCTTAAAGCCTCTCCATGGACCTGTTCGAGAATGGAAAAGTTGTTAGAGTTTGTGCTCCAATGGTACGGTACTCAAAACTGTCTTTCAGATCTCTGGTGAGAAAATATGAATGTGACATGTGCTACACGCCTATGATAGTTGCTGCTGATTTCATGCGTTCTGTCAAAGCCAGAGATAGTGAATTCACCACTAACAACTCTGACCGACCGTTAATCATCCAGTTTGCCGCTAAAGATGCCCAGACACTGGCAGATGCTGCATGTGTAGTTGCGCCTTTCTCTGATGGAGTGGATCTAAATTGCGGATGCCCTCAAAGATGGGCTATGGCAGAAGGCTATGGGGCATGCTTGATTAATAAACCACAACTAGTAAAAGACATGGTGAGACATGTGAAAAACCAAATAGACAATCCCAACTATGCAGTATCCATCAAAATAAGAATTCACAAGGATGTGAGGAAGACCGTGGACCTTTGTCAGAAGGCCGAGGCTGCAGGAGTGTCATGGATCACAGTTCATGGGCGGACAGCCTTAGAGAGGCATCAACCAGTGCATTACAACGCAATAAAAACTATTAAGGATAGTCTTTCTATCCCAGTCATTGCCAATGGAGATATCAAAAACGTTCAAGATGTGGAGTCCATATATGAACTTACAGGGGTGGATGGACAGTCTTCCAAGATCACTGATGACAGACCAGAcaatgaccaacacaaactgtgcagcaacagattcagagcttctgatTCTGAGTGTCTAAttgagtggaggacagtgagagtaGTGTTTTAGACCGAACAACTACATGGgaGTGATGTCTGCTCGAGGACTGCTGGCCAATCCTGCACTGTTTGCTGGCTATGAATATACCCccttgaagtgtgtgtgggacTGGGTAGACATTGCCTTGGAACAGGGGACTCCCTTTACTTGCTTTCACCAGCATCTTATTTACATGTTAGAACGCATCACTTCCCAGCCTGAGAGGAAAATCTTCAACAGTTTGTCAAGTATATCTGCAGTCACTGACTACTTGCTCCATTGCTATGGACCAGTATAGTTATCAGAATTTAGATTCTGATtatcccccccccctccccccacatttttttttgtattgatttttatttaaaataaagtgaggTTGTAAATAAGAATGTAC

Function

symbol description
dus4l Predicted to enable tRNA dihydrouridine synthase activity. Predicted to act upstream of or within tRNA processing. Orthologous to human DUS4L (dihydrouridine synthase 4 like).

NR:

description
PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05545 DUS4; tRNA-dihydrouridine synthase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238165.3 False 1267 mRNA 0.46 6 22274649 22278003
XM_007238166.3 False 1239 mRNA 0.46 6 22274663 22278003
XM_022671528.1 True 1436 mRNA 0.46 7 22274641 22278022

Neighbor

gene id symbol gene type direction distance location
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding upstream 30737 22181203 ~ 22243904 (+)
LOC103042836 NA coding upstream 112791 22104840 ~ 22161850 (+)
ptprr ptprr coding upstream 174005 21994110 ~ 22100636 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding upstream 318363 21932769 ~ 21956278 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding upstream 363064 21905259 ~ 21911577 (+)
bcap29 bcap29 coding downstream 6725 22284747 ~ 22297679 (+)
LOC103025638 mansc1 coding downstream 726733 23004755 ~ 23012773 (+)
lrp6 lrp6,LOC100705426 coding downstream 742362 23020384 ~ 23085044 (+)
rerg rerg,LOC107662225,LOC107669035 coding downstream 1173541 23451563 ~ 23548257 (+)
etv6 etv6 coding downstream 1638284 23916306 ~ 23953720 (+)
G65993 NA non-coding upstream 145313 22127389 ~ 22129328 (+)
G65910 NA non-coding upstream 181966 22092189 ~ 22092675 (+)
G65882 NA non-coding upstream 285098 21989245 ~ 21989543 (+)
G65874 NA non-coding upstream 304564 21969509 ~ 21970077 (+)
G65873 NA non-coding upstream 312196 21959215 ~ 21962445 (+)
G66048 NA non-coding downstream 406 22278428 ~ 22278731 (+)
G66053 NA non-coding downstream 1726 22279748 ~ 22279994 (+)
G66055 NA non-coding downstream 2752 22280774 ~ 22281491 (+)
G66056 NA non-coding downstream 5412 22283434 ~ 22284072 (+)
G66062 NA non-coding downstream 40821 22318843 ~ 22319548 (+)
gen1 gen1 other upstream 559204 21629787 ~ 21715437 (+)
agbl5 NA other upstream 725479 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 1250067 21024175 ~ 21024574 (+)
G65565 NA other upstream 1317006 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 2480316 19780663 ~ 19794325 (+)
ccdc167 NA other downstream 661533 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 721348 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 853058 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 944492 23222514 ~ 23323361 (+)
G66296 NA other downstream 1166152 23444174 ~ 23444677 (+)

Expression


Co-expression Network