etv6 (etv6)


Basic Information

Item Value
gene id etv6
gene name etv6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23916306 ~ 23953720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239000.3
AGAGGGTTTCCCTTTAAGGGGGCTGCGCCTCACTGCTAGGAATTCACGTCATTTCGCCACCAAACACGACCGAATCAATGAGCGCAGCGCGAGTCTTCCAGGAAGGTGTTAACCATCACCTCGCCAAAATGTAGCGCCGCTGCAGGACAGAAGAGCACAGCAGCAGAAGTTGGAGGAAAGCTTTGTTGGTGTTTTCCGGGACGGGCGGGAGCGATGGAGCCGCAGGCCGAGtgatgagcagcagcagcagcgcgccGGCGGCTCGACAAACACTGAGGCCGGACTGTCTCTGCTTCTCCGCGGCGGCGGTTCCTCTGTTTCACagagaataaagaaaagaaggaggaggaggagaaaaggaaaGTGGAAACGGGAGAACTTCCTGAATTTGAGACATGTCCAGTTCCCCCTCGCAGGTCAATGTTAagcaggAGAGGAGTGCGTTCAGTCCCTCTGCCAGTCCACTGCCAAATTCCACTTCCTCTCCTGCCCATGCCCCTCCCCCTGTCGCTAACGCTAGGACAGACGAAGAGCCAAGCAGACTGCCTGGACACCTGCGTCTCCAGCCTGTGTTCTGGAGCAGAGAGGATGTTGGGCAATGGCTCCGCTgggcagagagagagtttgCACTGCGACCCATCTCAAGCGGAAGCTTCCAGATGAACGGCAAGGCTCTCCTGCTTCTCACCAAGGAGGACTTCCGCTACCGCTCTCCCCATTCAGGTGATGTCCTTTACGAACTCCTGCAGCACATTCTGAAGCAGAGAAAGACCCACTCGCCTTTCCCTTCCACATATTACCCAGGAACCCCCTTCCACTCACTGCCTGAAGCAGCACTTCAACAACACAAACTTgaggAAACGGTACTACGGACCCCACGTGGAACAGATGCTCTACACCTGCACCCCCCAACTATTGAGCTCCGGCATCGCTCACGCTCACCCCACCACACGGCACCAAGACGCTCGCCCGCTGATCCATCACAACTCCATTCCCTCAGCTCAGGGGAGGACCCCCAGCAAACGTCCTCCCAACTGCCCGACAGCAACAATCACCTCCCTGAAGACCTGTACTCACTGTCTGTATCTCCTACTGCTCCCAATGGCCATTGTCCCGCACCCCGCGAGGCTCCGCGGCCAGGCAGCCCCTGCCAGGAAGAGTCGGCACCACCCCGGGTCATCCAGCTGATGCCCAGCGCCATCATGCACCCTCTGCTCCTCAGCCCCGGACGAGGAGGGGTGCCGGGGGACTTCAGGCACGGCAGGGCAGCACCTCAGGAAAATGGCCGAGAGGGTAAAGGGCATCACCACCACAATCACCATCACACTCACCATCATCCCTCTCACCACCCCCTGAGCTTGGCGGGTCACCAGCAACCCcatcagctccaccagcagGAAGACACCCGCTACCGAAACCAGATCATCATGCCCGTCTCGCCACCAGAGGAGCAAGGAATGCCTATTGGACGCATTGCTGATTGCAGACTACTGTGGGACTACGTCTATCAGCTCCTCTCTGACAGTCGCTATGAGAACTATATCCGCTGGGAGGACCGTGAAACCAAAGTTTTCCGAATCCTCGATCCTAATGGCCTGGCTCGATTATGGGGAAACCATAAGAACAGGACCAACATGACGTATGAGAAAATGTCAAGAGCACTAAGACACTACTACAAACTGAACATCATCAGGAAAGAGCCAGGACAGAGACTTCTGTTCAGGTTCATGAAAACCCCGGACGAGATCATGAGCGGACAGACGGATCGTTTGGAACATATGGAGTCTGACACAGATGAACAGATATATGTGAAAGAGGAGTGCTGAGTCATGCCGCACGTTGAGACGAACTTTTAAAGCCGTAGATGCCTCGCCAATGTTCCGCTGACTTCAGCATCAACCAAGCAGGCCTAGACATTTTGCATAGATTAACTGGGGAGCAAGAGACATGGATATTTACTGCACTGTTTTCTATGCTGATTCTTGATAATTCAGTttctttctattattttatggtctatgcctaaaaaaacaaacatcaatATGACAATCATTTTAATGATAGATATTCCTTTTCAAATTGTTTCTTTAAAGTTTCTGGCACAATGAATGATTTTTGAGCTTTTCTGTaaggtttttttgttgtttttttttgtgtgttaagtgtgtattgtacacacacacttttgcaATTTGTGTAAACAAGTCATCCAAGAGATTAATTCAAGAATAAATTTTAATGACTgaga
>XM_007239001.3
AGAGGGTTTCCCTTTAAGGGGGCTGCGCCTCACTGCTAGGAATTCACGTCATTTCGCCACCAAACACGACCGAATCAATGAGCGCAGCGCGAGTCTTCCAGGAAGGTGTTAACCATCACCTCGCCAAAATGTAGCGCCGCTGCAGGACAGAAGAGCACAGCAGCAGAAGTTGGAGGAAAGCTTTGTTGGTGTTTTCCGGGACGGGCGGGAGCGATGGAGCCGCAGGCCGAGtgatgagcagcagcagcagcgcgccGGCGGCTCGACAAACACTGAGGCCGGACTGTCTCTGCTTCTCCGCGGCGGCGGTTCCTCTGTTTCACagagaataaagaaaagaaggaggaggaggagaaaaggaaaGTGGAAACGGGAGAACTTCCTGAATTTGAGACATGTCCAGTTCCCCCTCGCAGGTCAATGTTAaggAGAGGAGTGCGTTCAGTCCCTCTGCCAGTCCACTGCCAAATTCCACTTCCTCTCCTGCCCATGCCCCTCCCCCTGTCGCTAACGCTAGGACAGACGAAGAGCCAAGCAGACTGCCTGGACACCTGCGTCTCCAGCCTGTGTTCTGGAGCAGAGAGGATGTTGGGCAATGGCTCCGCTgggcagagagagagtttgCACTGCGACCCATCTCAAGCGGAAGCTTCCAGATGAACGGCAAGGCTCTCCTGCTTCTCACCAAGGAGGACTTCCGCTACCGCTCTCCCCATTCAGGTGATGTCCTTTACGAACTCCTGCAGCACATTCTGAAGCAGAGAAAGACCCACTCGCCTTTCCCTTCCACATATTACCCAGGAACCCCCTTCCACTCACTGCCTGAAGCAGCACTTCAACAACACAAACTTgaggAAACGGTACTACGGACCCCACGTGGAACAGATGCTCTACACCTGCACCCCCCAACTATTGAGCTCCGGCATCGCTCACGCTCACCCCACCACACGGCACCAAGACGCTCGCCCGCTGATCCATCACAACTCCATTCCCTCAGCTCAGGGGAGGACCCCCAGCAAACGTCCTCCCAACTGCCCGACAGCAACAATCACCTCCCTGAAGACCTGTACTCACTGTCTGTATCTCCTACTGCTCCCAATGGCCATTGTCCCGCACCCCGCGAGGCTCCGCGGCCAGGCAGCCCCTGCCAGGAAGAGTCGGCACCACCCCGGGTCATCCAGCTGATGCCCAGCGCCATCATGCACCCTCTGCTCCTCAGCCCCGGACGAGGAGGGGTGCCGGGGGACTTCAGGCACGGCAGGGCAGCACCTCAGGAAAATGGCCGAGAGGGTAAAGGGCATCACCACCACAATCACCATCACACTCACCATCATCCCTCTCACCACCCCCTGAGCTTGGCGGGTCACCAGCAACCCcatcagctccaccagcagGAAGACACCCGCTACCGAAACCAGATCATCATGCCCGTCTCGCCACCAGAGGAGCAAGGAATGCCTATTGGACGCATTGCTGATTGCAGACTACTGTGGGACTACGTCTATCAGCTCCTCTCTGACAGTCGCTATGAGAACTATATCCGCTGGGAGGACCGTGAAACCAAAGTTTTCCGAATCCTCGATCCTAATGGCCTGGCTCGATTATGGGGAAACCATAAGAACAGGACCAACATGACGTATGAGAAAATGTCAAGAGCACTAAGACACTACTACAAACTGAACATCATCAGGAAAGAGCCAGGACAGAGACTTCTGTTCAGGTTCATGAAAACCCCGGACGAGATCATGAGCGGACAGACGGATCGTTTGGAACATATGGAGTCTGACACAGATGAACAGATATATGTGAAAGAGGAGTGCTGAGTCATGCCGCACGTTGAGACGAACTTTTAAAGCCGTAGATGCCTCGCCAATGTTCCGCTGACTTCAGCATCAACCAAGCAGGCCTAGACATTTTGCATAGATTAACTGGGGAGCAAGAGACATGGATATTTACTGCACTGTTTTCTATGCTGATTCTTGATAATTCAGTttctttctattattttatggtctatgcctaaaaaaacaaacatcaatATGACAATCATTTTAATGATAGATATTCCTTTTCAAATTGTTTCTTTAAAGTTTCTGGCACAATGAATGATTTTTGAGCTTTTCTGTaaggtttttttgttgtttttttttgtgtgttaagtgtgtattgtacacacacacttttgcaATTTGTGTAAACAAGTCATCCAAGAGATTAATTCAAGAATAAATTTTAATGACTgaga
>XM_007239002.3
AGAGGGTTTCCCTTTAAGGGGGCTGCGCCTCACTGCTAGGAATTCACGTCATTTCGCCACCAAACACGACCGAATCAATGAGCGCAGCGCGAGTCTTCCAGGAAGGTGTTAACCATCACCTCGCCAAAATGTAGCGCCGCTGCAGGACAGAAGAGCACAGCAGCAGAAGTTGGAGGAAAGCTTTGTTGGTGTTTTCCGGGACGGGCGGGAGCGATGGAGCCGCAGGCCGAGtgatgagcagcagcagcagcgcgccGGCGGCTCGACAAACACTGAGGCCGGACTGTCTCTGCTTCTCCGCGGCGGCGGTTCCTCTGTTTCACagagaataaagaaaagaaggaggaggaggagaaaaggaaaGTGGAAACGGGAGAACTTCCTGAATTTGAGACATGTCCAGTTCCCCCTCGCAGcaggAGAGGAGTGCGTTCAGTCCCTCTGCCAGTCCACTGCCAAATTCCACTTCCTCTCCTGCCCATGCCCCTCCCCCTGTCGCTAACGCTAGGACAGACGAAGAGCCAAGCAGACTGCCTGGACACCTGCGTCTCCAGCCTGTGTTCTGGAGCAGAGAGGATGTTGGGCAATGGCTCCGCTgggcagagagagagtttgCACTGCGACCCATCTCAAGCGGAAGCTTCCAGATGAACGGCAAGGCTCTCCTGCTTCTCACCAAGGAGGACTTCCGCTACCGCTCTCCCCATTCAGGTGATGTCCTTTACGAACTCCTGCAGCACATTCTGAAGCAGAGAAAGACCCACTCGCCTTTCCCTTCCACATATTACCCAGGAACCCCCTTCCACTCACTGCCTGAAGCAGCACTTCAACAACACAAACTTgaggAAACGGTACTACGGACCCCACGTGGAACAGATGCTCTACACCTGCACCCCCCAACTATTGAGCTCCGGCATCGCTCACGCTCACCCCACCACACGGCACCAAGACGCTCGCCCGCTGATCCATCACAACTCCATTCCCTCAGCTCAGGGGAGGACCCCCAGCAAACGTCCTCCCAACTGCCCGACAGCAACAATCACCTCCCTGAAGACCTGTACTCACTGTCTGTATCTCCTACTGCTCCCAATGGCCATTGTCCCGCACCCCGCGAGGCTCCGCGGCCAGGCAGCCCCTGCCAGGAAGAGTCGGCACCACCCCGGGTCATCCAGCTGATGCCCAGCGCCATCATGCACCCTCTGCTCCTCAGCCCCGGACGAGGAGGGGTGCCGGGGGACTTCAGGCACGGCAGGGCAGCACCTCAGGAAAATGGCCGAGAGGGTAAAGGGCATCACCACCACAATCACCATCACACTCACCATCATCCCTCTCACCACCCCCTGAGCTTGGCGGGTCACCAGCAACCCcatcagctccaccagcagGAAGACACCCGCTACCGAAACCAGATCATCATGCCCGTCTCGCCACCAGAGGAGCAAGGAATGCCTATTGGACGCATTGCTGATTGCAGACTACTGTGGGACTACGTCTATCAGCTCCTCTCTGACAGTCGCTATGAGAACTATATCCGCTGGGAGGACCGTGAAACCAAAGTTTTCCGAATCCTCGATCCTAATGGCCTGGCTCGATTATGGGGAAACCATAAGAACAGGACCAACATGACGTATGAGAAAATGTCAAGAGCACTAAGACACTACTACAAACTGAACATCATCAGGAAAGAGCCAGGACAGAGACTTCTGTTCAGGTTCATGAAAACCCCGGACGAGATCATGAGCGGACAGACGGATCGTTTGGAACATATGGAGTCTGACACAGATGAACAGATATATGTGAAAGAGGAGTGCTGAGTCATGCCGCACGTTGAGACGAACTTTTAAAGCCGTAGATGCCTCGCCAATGTTCCGCTGACTTCAGCATCAACCAAGCAGGCCTAGACATTTTGCATAGATTAACTGGGGAGCAAGAGACATGGATATTTACTGCACTGTTTTCTATGCTGATTCTTGATAATTCAGTttctttctattattttatggtctatgcctaaaaaaacaaacatcaatATGACAATCATTTTAATGATAGATATTCCTTTTCAAATTGTTTCTTTAAAGTTTCTGGCACAATGAATGATTTTTGAGCTTTTCTGTaaggtttttttgttgtttttttttgtgtgttaagtgtgtattgtacacacacacttttgcaATTTGTGTAAACAAGTCATCCAAGAGATTAATTCAAGAATAAATTTTAATGACTgaga
>XM_007239003.3
AGAGGGTTTCCCTTTAAGGGGGCTGCGCCTCACTGCTAGGAATTCACGTCATTTCGCCACCAAACACGACCGAATCAATGAGCGCAGCGCGAGTCTTCCAGGAAGGTGTTAACCATCACCTCGCCAAAATGTAGCGCCGCTGCAGGACAGAAGAGCACAGCAGCAGAAGTTGGAGGAAAGCTTTGTTGGTGTTTTCCGGGACGGGCGGGAGCGATGGAGCCGCAGGCCGAGtgatgagcagcagcagcagcgcgccGGCGGCTCGACAAACACTGAGGCCGGACTGTCTCTGCTTCTCCGCGGCGGCGGTTCCTCTGTTTCACagagaataaagaaaagaaggaggaggaggagaaaaggaaaGTGGAAACGGGAGAACTTCCTGAATTTGAGACATGTCCAGTTCCCCCTCGCAGgAGAGGAGTGCGTTCAGTCCCTCTGCCAGTCCACTGCCAAATTCCACTTCCTCTCCTGCCCATGCCCCTCCCCCTGTCGCTAACGCTAGGACAGACGAAGAGCCAAGCAGACTGCCTGGACACCTGCGTCTCCAGCCTGTGTTCTGGAGCAGAGAGGATGTTGGGCAATGGCTCCGCTgggcagagagagagtttgCACTGCGACCCATCTCAAGCGGAAGCTTCCAGATGAACGGCAAGGCTCTCCTGCTTCTCACCAAGGAGGACTTCCGCTACCGCTCTCCCCATTCAGGTGATGTCCTTTACGAACTCCTGCAGCACATTCTGAAGCAGAGAAAGACCCACTCGCCTTTCCCTTCCACATATTACCCAGGAACCCCCTTCCACTCACTGCCTGAAGCAGCACTTCAACAACACAAACTTgaggAAACGGTACTACGGACCCCACGTGGAACAGATGCTCTACACCTGCACCCCCCAACTATTGAGCTCCGGCATCGCTCACGCTCACCCCACCACACGGCACCAAGACGCTCGCCCGCTGATCCATCACAACTCCATTCCCTCAGCTCAGGGGAGGACCCCCAGCAAACGTCCTCCCAACTGCCCGACAGCAACAATCACCTCCCTGAAGACCTGTACTCACTGTCTGTATCTCCTACTGCTCCCAATGGCCATTGTCCCGCACCCCGCGAGGCTCCGCGGCCAGGCAGCCCCTGCCAGGAAGAGTCGGCACCACCCCGGGTCATCCAGCTGATGCCCAGCGCCATCATGCACCCTCTGCTCCTCAGCCCCGGACGAGGAGGGGTGCCGGGGGACTTCAGGCACGGCAGGGCAGCACCTCAGGAAAATGGCCGAGAGGGTAAAGGGCATCACCACCACAATCACCATCACACTCACCATCATCCCTCTCACCACCCCCTGAGCTTGGCGGGTCACCAGCAACCCcatcagctccaccagcagGAAGACACCCGCTACCGAAACCAGATCATCATGCCCGTCTCGCCACCAGAGGAGCAAGGAATGCCTATTGGACGCATTGCTGATTGCAGACTACTGTGGGACTACGTCTATCAGCTCCTCTCTGACAGTCGCTATGAGAACTATATCCGCTGGGAGGACCGTGAAACCAAAGTTTTCCGAATCCTCGATCCTAATGGCCTGGCTCGATTATGGGGAAACCATAAGAACAGGACCAACATGACGTATGAGAAAATGTCAAGAGCACTAAGACACTACTACAAACTGAACATCATCAGGAAAGAGCCAGGACAGAGACTTCTGTTCAGGTTCATGAAAACCCCGGACGAGATCATGAGCGGACAGACGGATCGTTTGGAACATATGGAGTCTGACACAGATGAACAGATATATGTGAAAGAGGAGTGCTGAGTCATGCCGCACGTTGAGACGAACTTTTAAAGCCGTAGATGCCTCGCCAATGTTCCGCTGACTTCAGCATCAACCAAGCAGGCCTAGACATTTTGCATAGATTAACTGGGGAGCAAGAGACATGGATATTTACTGCACTGTTTTCTATGCTGATTCTTGATAATTCAGTttctttctattattttatggtctatgcctaaaaaaacaaacatcaatATGACAATCATTTTAATGATAGATATTCCTTTTCAAATTGTTTCTTTAAAGTTTCTGGCACAATGAATGATTTTTGAGCTTTTCTGTaaggtttttttgttgtttttttttgtgtgttaagtgtgtattgtacacacacacttttgcaATTTGTGTAAACAAGTCATCCAAGAGATTAATTCAAGAATAAATTTTAATGACTgaga

Function

symbol description
etv6 Predicted to enable DNA-binding transcription factor activity and sequence-specific DNA binding activity. Acts upstream of or within embryonic hemopoiesis. Predicted to be located in nucleus. Is expressed in several structures, including brain; germ ring; intermediate cell mass of mesoderm; mesoderm; and renal system. Human ortholog(s) of this gene implicated in hematologic cancer (multiple) and thrombocytopenia. Orthologous to human ETV6 (ETS variant transcription factor 6).

NR:

description
PREDICTED: transcription factor ETV6 isoform X1

GO: NA

KEGG:

id description
K03211 ETV6_7, yan; ETS translocation variant 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239000.3 True 2248 mRNA 0.52 8 23916306 23953720
XM_007239001.3 False 2245 mRNA 0.52 8 23916306 23953720
XM_007239002.3 False 2236 mRNA 0.52 8 23916306 23953720
XM_007239003.3 False 2233 mRNA 0.52 8 23916306 23953720

Neighbor

gene id symbol gene type direction distance location
rerg rerg,LOC107662225,LOC107669035 coding upstream 368049 23451563 ~ 23548257 (+)
lrp6 lrp6,LOC100705426 coding upstream 831262 23020384 ~ 23085044 (+)
LOC103025638 mansc1 coding upstream 903533 23004755 ~ 23012773 (+)
bcap29 bcap29 coding upstream 1618627 22284747 ~ 22297679 (+)
dus4l dus4l coding upstream 1638284 22274641 ~ 22278022 (+)
LOC103023565 fam19a2,LOC103023565,LOC108411383,LOC108248567,LOC106529719,LOC103364248 coding downstream 72741 24026461 ~ 24117713 (+)
lrig3 lrig3,LOC104942525 coding downstream 343197 24296917 ~ 24320066 (+)
LOC111192915 NA coding downstream 505683 24459403 ~ 24461001 (+)
LOC103034593 LOC108442311 coding downstream 556769 24510489 ~ 24517356 (+)
LOC103033942 LOC103033942,LOC108442313 coding downstream 601881 24555601 ~ 24559622 (+)
G66382 NA non-coding upstream 4095 23911828 ~ 23912211 (+)
G66353 NA non-coding upstream 95329 23818073 ~ 23820977 (+)
LOC111192880 NA non-coding upstream 316715 23594228 ~ 23599591 (+)
G66338 NA non-coding upstream 321192 23594861 ~ 23595114 (+)
G66334 NA non-coding upstream 341973 23574103 ~ 23574333 (+)
G66389 NA non-coding downstream 22520 23976240 ~ 23977946 (+)
G66472 NA non-coding downstream 184185 24137905 ~ 24138185 (+)
G66476 NA non-coding downstream 232414 24186134 ~ 24186383 (+)
G66480 slc16a7 non-coding downstream 269285 24223005 ~ 24231186 (+)
G66488 NA non-coding downstream 370090 24323810 ~ 24324032 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other upstream 196212 23698152 ~ 23720094 (+)
G66303 NA other upstream 432373 23483333 ~ 23483933 (+)
G66296 NA other upstream 471629 23444174 ~ 23444677 (+)
eps8 eps8 other upstream 592945 23222514 ~ 23323361 (+)
crebl2 crebl2,LOC107707978 other upstream 778295 23131080 ~ 23138011 (+)
rpap3 rpap3 other downstream 413772 24367492 ~ 24383022 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other downstream 564902 24518622 ~ 24552340 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other downstream 645446 24599166 ~ 24684580 (+)
cspg4 cspg4 other downstream 1235465 25189185 ~ 25300875 (+)
LOC111192916 NA other downstream 2126732 26080452 ~ 26092119 (+)

Expression


Co-expression Network