LOC103028209


Basic Information

Item Value
gene id LOC103028209
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18567677 ~ 18575169 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241952.3
TGAAACTCAGGCAGCTCTGCGCTCTGATAGGCTGCTGGAGGTTCCATATAAGAGAGGTAGAGGCTGTGATTTTTATCTGTTTCGTGCTGCAGAGATTTGGAAAGATGACGCGGTGCAGATCTTTATTTGCCATCGTTTGGCCTCTTCTGTTTCTCCAGGTCTCTGCACAGAGCTGGAGTATATTTGGCGTCCAGCCGAAGGGGGCGCCGCAGGAGGGCGGAGTCAGGCTGGTGGGGAGCGTGCCCACCGCGGGCCGGGTGGAGGTGTACCACAGCGGGCAGTGGGGCACGGTGTGTGATGATAATTGGGAGATGGCCCAGGCTCAGGTGGTGTGTCGCCAGCTGGGGTTCCCTGGCGCTGTCTCCGCCTCCGTGGGCGGAGTCAATGGGGAAGGTTCTGGACCAATCTGGCTGGATGATGTAACCTGCACAGGATCTGAAAGCTCATTGGCCAGTTGTCGCTTTAAAGGGTGGGGTATAACCGACTGTTCCCACAAAGAGGATGCAGGAGTGATCTGTGAGAGCGgCAGTAGTGTGGACGATGATCAGAAGTTTTCACTGGACCACAGCGTCGGACTCTCTGAAGATCTCGGTTCCCTCTTCGATCAGGCGGAAAACTGCGATGTCGACGTTCTGGTCGTTGATTCCAGTGATGATCAAAGTCATGGGAAAACATTCTGCGTCCACAGAGTGATCCTCTCTCTTTACCCCCAGCTAAACATCTCAGAATCCACCAGAAACATCTCTGTAGACATCAGCCAGACCTGCCATCATCACGTCTACAGCTTCTTCAGgtaTTTCTACACACGTAAGCTGGACGTCACCCTGGCTTCAGCCCAGTGCCAGCACCAGTTATCCTACATGTTTGGGATGGAGCATCTTCTGGAGGAAGTCGGCAAGGTCTTCACTCTGCTGCTTCCTCAGGACAAGACCTTCCGCACTCAGGTGTCCCTGTACGAGTACGGCATCCGCACCGAAGACCTGCTGCTGCAGGAGAACGTCCTGCAGTACCTGTCCTGGAACTTCGAGTCGTTCGTCAGCTCTCCAGCCTGGAAGACCATCACCGTACACATGATGGAAGCTCTGCTGTCTCGCTCGGACCTGGTGGTGGAGGACGAGGCGTTTCTTCTGGAGACTCTGGAGAACTGGCTGGAGCAGAGGACGGACGTGACCTCACCCAAACGCCTAATCAGCCTCCTGAATCAGATCCGCTTCTGCATGATCCCAGTGGAAAAGCTCTACGACTTCCAGTTCACCTCGTCTTTGTACCAGAGCAACGAAGAGTACTTCAGTAGCGCCATTTTGAGAGCCTTCCAGTTCAACAGCCTTCCGTTCTCAAAGATCAGGAAGCATTTCAACGACTCCGACAGTTACCTGCCCAGAATCTACACCTCCAGCAACTGGAGTCTGGTCCTCAATTCCACTTCCACACGAAACAACATGTACAACCAGTATCGCCACAACTACTACTCCAATCCCGAAAGGCAGGGATCGTTCTCCACTCCAGCCCACAACAGTGTTCTCTACAATCAGAAGATCCTCCAGTGGCAGGCGCAGGTTCTCCTCTACAGCTGGGAATGCTCCAACCAAGGCTTCACCTGTGAATCTCTACCAATGGCCAGGCTCATTACCTACGACCGCTCCTACCAAAGTACCATTCGCTTCAGCAACAAGCTAATTCTCACCTGCAAGACTGAGAACACCGTCTTTCACGTCCAAGACTTCAAAAACGACAAGGCAGCCATTCCCAGCAACGGCACCATGAGTCTACCCAACCCCTGCCCTGATAACTACTTCTACACCTTCGTGGTGCGTCCGGAGTTCATCTGAAAGCATCCTTAAgtaatgaaactggcactcatcaggaccgcaccAGAAAAGGAAGACAAGAGATTCCCATAACCAAATGTGTGCTTTATGTGTGCTAAGCTATGTGGAGATCAGAACATGTTTctcttttaaaggagaactctggtggaAAAAGgatttttgttgtagtaaaacataataaaaagttcttacgccagtttttacaccg
>XM_022671419.1
TGAAACTCAGGCAGCTCTGCGCTCTGATAGGCTGCTGGAGGTTCCATATAAGAGAGGTAGAGGCTGTGATTTTTATCTGTTTCGTGCTGCAGAGATTTGGAAAGATGACGCGGTGCAGATCTTTATTTGCCATCGTTTGGCCTCTTCTGTTTCTCCAGGTCTCTGCACAGAGCTGGAGTATATTTGGCGTCCAGCCGAAGGGGGCGCCGCAGGAGGGCGGAGTCAGGCTGGTGGGGAGCGTGCCCACCGCGGGCCGGGTGGAGGTGTACCACAGCGGGCAGTGGGGCACGGTGTGTGATGATAATTGGGAGATGGCCCAGGCTCAGGTGGTGTGTCGCCAGCTGGGGTTCCCTGGCGCTGTCTCCGCCTCCGTGGGCGGAGTCAATGGGGAAGGTTCTGGACCAATCTGGCTGGATGATGTAACCTGCACAGGATCTGAAAGCTCATTGGCCAGTTGTCGCTTTAAAGGGTGGGGTATAACCGACTGTTCCCACAAAGAGGATGCAGGAGTGATCTGTGAGAGCGgCAGTAGTGTGGACGATGATCAGAAGTTTTCACTGGACCACAGCGTCGGACTCTCTGAAGATCTCGGTTCCCTCTTCGATCAGGCGGAAAACTGCGATGTCGACGTTCTGGTCGTTGATTCCAGTGATGATCAAAGTCATGGGAAAACATTCTGCGTCCACAGAGTGATCCTCTCTCTTTACCCCCAGCTAAACATCTCAGAATCCACCAGAAACATCTCTGTAGACATCAGCCAGACCTGCCATCATCACGTCTACAGCTTCTTCAGgtaTTTCTACACACGTAAGCTGGACGTCACCCTGGCTTCAGCCCAGTGCCAGCACCAGTTATCCTACATGTTTGGGATGGAGCATCTTCTGGAGGAAGTCGGCAAGGTCTTCACTCTGCTGCTTCCTCAGGACAAGACCTTCCGCACTCAGGTGTCCCTGTACGAGTACGGCATCCGCACCGAAGACCTGCTGCTGCAGGAGAACGTCCTGCAGTACCTGTCCTGGAACTTCGAGTCGTTCGTCAGCTCTCCAGCCTGGAAGACCATCACCGTACACATGATGGAAGCTCTGCTGTCTCGCTCGGACCTGGTGGTGGAGGACGAGGCGTTTCTTCTGGAGACTCTGGAGAACTGGCTGGAGCAGAGGACGGACGTGACCTCACCCAAACGCCTAATCAGCCTCCTGAATCAGATCCGCTTCTGCATGATCCCAGTGGAAAAGCTCTACGACTTCCAGTTCACCTCGTCTTTGTACCAGAGCAACGAAGAGTACTTCAGTAGCGCCATTTTGAGAGCCTTCCAGTTCAACAGCCTTCCGTTCTCAAAGATCAGGAAGCATTTCAACGACTCCGACAGTTACCTGCCCAGAATCTACACCTCCAGCAACTGGAGTCTGGTCCTCAATTCCACTTCCACACGAAACAACATGTACAACCAGTATCGCCACAACTACTACTCCAATCCCGAAAGGCAGGGATCGTTCTCCACTCCAGCCCACAACAGTGTTCTCTACAATCAGAAGATCCTCCAGTGGCAGGCGCAGGTTCTCCTCTACAGCTGGGAATGCTCCAACCAAGGCTTCACCTGTGAATCTCTACCAATGGCCAGGCTCATTACCTACGACCGCTCCTACCAAAGTACCATTCGCTTCAGCAACAAGCTAATTCTCACCTGCAAGACTGAGAACACCGTCTTTCACGTCCAAGACTTCAAAAACGACAAGGCAGCCATTCCCAGCAACGGCACCATGAGTCTACCCAACCCCTGCCCTGATAACTACTTCTACACCTTCGTGGTGCGTCCGGAGTTCATCTGAAAGCATCCTTAAgtgatgaaactggcactcatcaggaccgcaccAGAAAAGGAAGACAAGAGATTCCCATAACCAAATGTGTGCTTTATGTGTGCTAAGCTATGTGGAGATCAGAACATGTTTctcttttaaaggagaactctggtggaAAAAGgatttttgttgtagtaaaacataataaaaagttcttacgccgtttttac

Function

GO: NA

KEGG:

id description
K17300 LGALS3BP; galectin-3-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241952.3 True 2037 mRNA 0.52 6 18568250 18575169
XM_022671419.1 False 2032 mRNA 0.52 7 18567677 18575169

Neighbor

gene id symbol gene type direction distance location
LOC103028836 NA coding downstream 16704 18538903 ~ 18550973 (-)
LOC103034879 usp36,LOC107717487 coding downstream 30934 18489652 ~ 18536743 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding downstream 211182 18353333 ~ 18356495 (-)
hid1 hid1,LOC107710705,LOC107698779 coding downstream 646866 17884620 ~ 17920811 (-)
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding downstream 712515 17840179 ~ 17855162 (-)
tspan10 NA coding upstream 11400 18586569 ~ 18590070 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding upstream 142333 18717502 ~ 18718630 (-)
LOC103035518 nptx1l,LOC108435874 coding upstream 535964 19111133 ~ 19121460 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding upstream 834129 19409298 ~ 19515383 (-)
lhfpl3 lhfpl3 coding upstream 1090390 19665559 ~ 19714443 (-)
G65067 NA non-coding downstream 7129 18560128 ~ 18560548 (-)
G64959 NA non-coding downstream 121910 18444626 ~ 18445767 (-)
G64948 NA non-coding downstream 239217 18327721 ~ 18328460 (-)
G64936 NA non-coding downstream 337194 18199063 ~ 18230483 (-)
G64938 NA non-coding downstream 345485 18203144 ~ 18222192 (-)
G65069 NA non-coding upstream 6439 18581608 ~ 18582016 (-)
G65066 NA non-coding upstream 44542 18619711 ~ 18623603 (-)
G65064 NA non-coding upstream 129971 18705140 ~ 18709436 (-)
G65096 NA non-coding upstream 136411 18711580 ~ 18753784 (-)
G65102 NA non-coding upstream 184631 18759800 ~ 18760297 (-)
G64886 NA other downstream 636507 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 878365 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 903116 17535296 ~ 17664561 (-)
G64492 NA other downstream 1679774 16882335 ~ 16887903 (-)
G64387 NA other downstream 1982030 16585065 ~ 16585647 (-)
LOC111192976 NA other upstream 49706 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 63138 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 323016 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 705133 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 730818 19305987 ~ 19370708 (-)

Expression


Co-expression Network