LOC103035404 (zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411)


Basic Information

Item Value
gene id LOC103035404
gene name zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18717502 ~ 18718630 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242359.3
AAGCCTGCAGATGATCCACAGCTCCACACGAGAACCCAACCCCTTACTATTCCTCATCTGCATGCTCCTCTTCGATTGGTCACTGTGAGGGATGCTGCTGTGCCGTGATTGGCTGGCAGCTCAGAGGGGGCGTGCATCCTCAGCGATTGAGAAATCCTATAAATAGAGCGTACAGGCTCACCAGCCTCAGAAGCACCTGTCTGCTGTGTTCAGAGCGCATCATTCCAGCTCCAGCTTCTCAATGGATCTCCGCAAGATCTGAGACAACCAGCACTCGTCTTATCTCATCTTATCTcgtcttatcttgtcttatcttgtctcTTATCTTCAGATCTGTCTTCAGAAAGACTTCAAAGACTGAAAGACGTTAAGAATTCCAGACGACAGGTTGccaaatcctcaagatttaacTAAAGGCGCAAGACTTTCTCAGCATCTTCTGAACAACAAGAGACGTCATCCGGTAGAAACAGTAGGAACcgtaggaacattaggaacatgtCGCTGGACGTCAAAGAAGAGAAGACAGAGATACGCCTGGTCTTCATGGGAGCGGCCGGCGTCGGGAAGACAGCCCTGATCCAGCGCTTCCTCCAGGACAGCTTCGAACCCAAGCACCGCCGCACCGTCGAGGAGCTCCACAGCAAAGAGTACGAGGTTGGCGGCGTCAAGGTGACCATCAACATCATGGACACCAGCGGCAGCTACTCCTTCCCCGCCATGCGCAAACTGTCCATCCAGAATGGGGACGCCTTCGCCCTGGTCTACTCCGTGGACGACCCCGAGTCGCTGGACGCCGTCAAGAGCCTGCGAGAGGAGATCCTGGAGGTCAAGGAGGACAAGTTCACCCCCATCGTGGTGGTGGGCAACAAGACGGACCGGCTGGGCGAGCGGCGGGTGTCGGCCGACGACGTCCTCGCCACTGTGGAGCTGGACTGGAACAACTGCTTCCTGGAAGCTTCCGCCAAAGAGAACAACAACGTCCTGGAAGTGTTTAGAGAACTTCTTCAGCAAGCCAACCTGCCCAGCCGCCTGAGTCCTGCCCTTTGCCGCCGCAGAGAGACGTTCCCCAAGAACGTGGGGACGAGACCGCCCATGAACAAGACCAACAGCTGCACCGTGTCCTGAA

Function

NR:

description
ras-related protein Rap-1b-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242359.3 True 1129 mRNA 0.55 1 18717502 18718630

Neighbor

gene id symbol gene type direction distance location
tspan10 NA coding downstream 127432 18586569 ~ 18590070 (-)
LOC103028209 NA coding downstream 142333 18567677 ~ 18575169 (-)
LOC103028836 NA coding downstream 166529 18538903 ~ 18550973 (-)
LOC103034879 usp36,LOC107717487 coding downstream 180759 18489652 ~ 18536743 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding downstream 361007 18353333 ~ 18356495 (-)
LOC103035518 nptx1l,LOC108435874 coding upstream 392503 19111133 ~ 19121460 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding upstream 690668 19409298 ~ 19515383 (-)
lhfpl3 lhfpl3 coding upstream 946929 19665559 ~ 19714443 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 1014125 19732755 ~ 19738419 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 1335321 20053951 ~ 20064790 (-)
G65064 NA non-coding downstream 8066 18705140 ~ 18709436 (-)
G65066 NA non-coding downstream 93899 18619711 ~ 18623603 (-)
G65069 NA non-coding downstream 135486 18581608 ~ 18582016 (-)
G65067 NA non-coding downstream 156954 18560128 ~ 18560548 (-)
G64959 NA non-coding downstream 271735 18444626 ~ 18445767 (-)
G65102 NA non-coding upstream 41170 18759800 ~ 18760297 (-)
G65103 NA non-coding upstream 41741 18760371 ~ 18816516 (-)
G65108 NA non-coding upstream 63241 18781871 ~ 18836432 (-)
G65111 NA non-coding upstream 115217 18833847 ~ 18835436 (-)
G65185 NA non-coding upstream 182997 18901627 ~ 18908694 (-)
LOC111192976 NA other downstream 4982 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other downstream 67159 18638307 ~ 18650343 (-)
G64886 NA other downstream 786332 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 1028190 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 1052941 17535296 ~ 17664561 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 179555 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 561672 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 587357 19305987 ~ 19370708 (-)
ndufb2 ndufb2 other upstream 881584 19600214 ~ 19605725 (-)
llph llph other upstream 1076524 19795154 ~ 19799602 (-)

Expression


Co-expression Network