LOC103047157 (socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761)


Basic Information

Item Value
gene id LOC103047157
gene name socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18353333 ~ 18356495 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243060.3
AGATCAGACGCTGAAAGAGCAGCGCGGAAACACAGCGGACTACTTTTCTCTGCTTTATCCACCGGATTTACTCAAATTCTACTGGGATTAAACTGAATTATACATATAATACCtcataaaaaagGTGCCAACCATCTTCATCCAACGTGGTCCTGACCTTTAATGCCAGCTCCAAGTACGCCATGGTAACACACAGCAAACCCGCAATGAGCAGCTGCACCCTGGACGCCAACATGCGGCTCGCTCCCCACCGTTACAAGACCTTCAGCTCCAAGCTGCAGTACCAGCTGGTCCAGGGCACGGTCctgaagctgcaggagagcggctTCTACTGGTCGTCCATCAGCGGCAAGGAGGCCAACCGCATGCTGGCGTCAGAGCCCAACGGCACCTTCCTGATCCGCGACAGCTCCGACAATCGCCACTTCTTCACGCTCAGCGTCAAGACCGAGTCCGGCACCAAGAACCTGCGGGTGCAGTGCGACAACAGGTCGTTTTTCCTGCAGACGGACGCCAAGAGCTCGCAGGCGGTGCCTCGCTTCGACTGCGTTCTCAAGCTCGTGCACCACTACATGTCTTCGGCGAGGGCAGCCGCTTCTATGGGCAACGTCCGCAGCGCCTACTACATCTACTCCGGGCGGGAGAAGATCCCGTTGGAGCTGCTGAGGCCGTACCCGTGCACCATGTCTTCTTTGAAGCACTTGTGCAGGAAGACGGTCAACGGACACTTGGACATTTCCAGTACGAGAGAGCAGCTGCCTCAATCTCTCAAGGACTTTCTTCAGGAATACGACGCTCCTATTTAGGAGGAATTGATTCGGTTTGAGCACACTTGGCGTTAAAAGTAAGGGTAGAGCTAGCTCTGATAGCTCCCGCCGGCTCCTGCAAGATCTTCCATTTCAATGGCGACTGTTAGGAGATTGAGATGGGACTTGAAGGAGCGGAAAGCTCCAAGAAGAAAGTTTCGAGAGGCGTTCAAGAAACCAACAGTGCTGCTAATTGGGCACCTCTTCCACAATGGTTGTCCAACCTTGGGGCGACGGGAGAGGTCACCTCCAATGAACATTCCCAAACGTTCCCTTTATTTGCACAAGAAGTACGTACGTAGTTCTCATCCCAACAGTGGGCCTACTACTCTCTATCAAAGACTGTCTCTTTCAAGACGACAAAAGCATAGCTACTGCTCTTCGTACACCAGCCTTCAATACACTCTTCGATCCAGACTTTCCACTGGGAACTTCTTGGGAACTTTGGGAACTGCCAGCCTAAAAACCCAAAGTTCCCTTTCTAGTTGAACAAGCAAGGCAGCTGTTTACTACTACTCTATTTACTCTACACCCTTTTTTCGCCACAGGAACTGGTAACATGATCCAACAACACCCAACAACACCAAGCCCACTTGGGTACCAGCCTCCAGAGCAGGTCCTCGCTGCCCCCAAACCAACACAACCCAACATATCCCAACATAACCCAAAGTTACCCAACATAACTCACTCCAGCATGCCTGTGCTGGCTTACCGAGCAGGGAGCGGGTCCAGCATTTAGCGGAAACACAACCACCGCCTTCTTCCAAGTAAATATTTGTGCCTTTCATGGAAAAAGGAAGGACTGAGTAACAGCAGTCGGGCTGAGAAGGTTATGGGAAGTGACATTTACACTTCTGGGGAAAGTGAGGCAGCAGAAACACAGGCTTTTTACGAGAAGACAAAACATGTGAAAAGAAATTGTGAAAAGAGTGATCGTTTTATGATCAGTGttccttttttgttgtttgtttttcatttctgaACCTGTTTTTGATCAAAATCCTGACTGGAGAAGCTGAAGTTAGACAGTGAACATCTGTATGAAGAGTGTAAACATGTATAAACAGTATGTTTGGGTTTTTGTTAGCACTGAAAAGCTAACGATGCTAACACAGCTGGTATCAAAAGTGTGGTTTTATACTtaagtgaggaagaggaggagaagagtaGCAGGTTTATGGATTTAtgaatgtttataaatataaaaaatgaatgtattcagATAGGGGGACCTTAAACCCCCTGTCTTATTATCGTACTTCAGAGTATCTCTCGTTCATCTTCAAGACACTGTTTACACGTGTGAAGACCATTTTTGTAACAATCTGctcttttgtcttttgtaaAGATGTAACAACCTTATGTCTGTTCATGTGACTTGCGGTTAATGCTTGAAAGAAAAGATGAAAAGGAAACCACAAAAAACGAAAGAAAGCAGACTGCAAATCCTGAAAATACTTtgcacatatttatatttataaatcatttcataatttataataaaaagcactatttttataaaaatgaaa
>XM_007243061.3
AGATCAGACGCTGAAAGAGCAGCGCGGAAACACAGCGGACTACTTTTCTCTGCTTTATCCACCGGATTTACTCAAATTCTACTGGGATTAAACTGAATTATACATATAATACCtcataaaaAGGTGCCAACCATCTTCATCCAACGTGGTCCTGACCTTTAATGCCAGCTCCAAGTACGCCATGGTAACACACAGCAAACCCGCAATGAGCAGCTGCACCCTGGACGCCAACATGCGGCTCGCTCCCCACCGTTACAAGACCTTCAGCTCCAAGCTGCAGTACCAGCTGGTCCAGGGCACGGTCctgaagctgcaggagagcggctTCTACTGGTCGTCCATCAGCGGCAAGGAGGCCAACCGCATGCTGGCGTCAGAGCCCAACGGCACCTTCCTGATCCGCGACAGCTCCGACAATCGCCACTTCTTCACGCTCAGCGTCAAGACCGAGTCCGGCACCAAGAACCTGCGGGTGCAGTGCGACAACAGGTCGTTTTTCCTGCAGACGGACGCCAAGAGCTCGCAGGCGGTGCCTCGCTTCGACTGCGTTCTCAAGCTCGTGCACCACTACATGTCTTCGGCGAGGGCAGCCGCTTCTATGGGCAACGTCCGCAGCGCCTACTACATCTACTCCGGGCGGGAGAAGATCCCGTTGGAGCTGCTGAGGCCGTACCCGTGCACCATGTCTTCTTTGAAGCACTTGTGCAGGAAGACGGTCAACGGACACTTGGACATTTCCAGTACGAGAGAGCAGCTGCCTCAATCTCTCAAGGACTTTCTTCAGGAATACGACGCTCCTATTTAGGAGGAATTGATTCGGTTTGAGCACACTTGGCGTTAAAAGTAAGGGTAGAGCTAGCTCTGATAGCTCCCGCCGGCTCCTGCAAGATCTTCCATTTCAATGGCGACTGTTAGGAGATTGAGATGGGACTTGAAGGAGCGGAAAGCTCCAAGAAGAAAGTTTCGAGAGGCGTTCAAGAAACCAACAGTGCTGCTAATTGGGCACCTCTTCCACAATGGTTGTCCAACCTTGGGGCGACGGGAGAGGTCACCTCCAATGAACATTCCCAAACGTTCCCTTTATTTGCACAAGAAGTACGTACGTAGTTCTCATCCCAACAGTGGGCCTACTACTCTCTATCAAAGACTGTCTCTTTCAAGACGACAAAAGCATAGCTACTGCTCTTCGTACACCAGCCTTCAATACACTCTTCGATCCAGACTTTCCACTGGGAACTTCTTGGGAACTTTGGGAACTGCCAGCCTAAAAACCCAAAGTTCCCTTTCTAGTTGAACAAGCAAGGCAGCTGTTTACTACTACTCTATTTACTCTACACCCTTTTTTCGCCACAGGAACTGGTAACATGATCCAACAACACCCAACAACACCAAGCCCACTTGGGTACCAGCCTCCAGAGCAGGTCCTCGCTGCCCCCAAACCAACACAACCCAACATATCCCAACATAACCCAAAGTTACCCAACATAACTCACTCCAGCATGCCTGTGCTGGCTTACCGAGCAGGGAGCGGGTCCAGCATTTAGCGGAAACACAACCACCGCCTTCTTCCAAGTAAATATTTGTGCCTTTCATGGAAAAAGGAAGGACTGAGTAACAGCAGTCGGGCTGAGAAGGTTATGGGAAGTGACATTTACACTTCTGGGGAAAGTGAGGCAGCAGAAACACAGGCTTTTTACGAGAAGACAAAACATGTGAAAAGAAATTGTGAAAAGAGTGATCGTTTTATGATCAGTGttccttttttgttgtttgtttttcatttctgaACCTGTTTTTGATCAAAATCCTGACTGGAGAAGCTGAAGTTAGACAGTGAACATCTGTATGAAGAGTGTAAACATGTATAAACAGTATGTTTGGGTTTTTGTTAGCACTGAAAAGCTAACGATGCTAACACAGCTGGTATCAAAAGTGTGGTTTTATACTtaagtgaggaagaggaggagaagagtaGCAGGTTTATGGATTTAtgaatgtttataaatataaaaaatgaatgtattcagATAGGGGGACCTTAAACCCCCTGTCTTATTATCGTACTTCAGAGTATCTCTCGTTCATCTTCAAGACACTGTTTACACGTGTGAAGACCATTTTTGTAACAATCTGctcttttgtcttttgtaaAGATGTAACAACCTTATGTCTGTTCATGTGACTTGCGGTTAATGCTTGAAAGAAAAGATGAAAAGGAAACCACAAAAAACGAAAGAAAGCAGACTGCAAATCCTGAAAATACTTtgcacatatttatatttataaatcatttcataatttataataaaaagcactatttttataaaaatgaaa

Function

symbol description
socs3 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Involved in negative regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in cytosol. Predicted to be part of phosphatidylinositol 3-kinase complex. Implicated in atopic dermatitis 4. Biomarker of ductal carcinoma in situ; human immunodeficiency virus infectious disease; invasive ductal carcinoma; obesity; and type 2 diabetes mellitus.

NR:

description
suppressor of cytokine signaling 3-like

GO:

id name namespace
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process

KEGG:

id description
K04696 SOCS3, CIS3; suppressor of cytokine signaling 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243060.3 True 2335 mRNA 0.46 2 18353333 18356495
XM_007243061.3 False 2334 mRNA 0.46 2 18353333 18356495

Neighbor

gene id symbol gene type direction distance location
hid1 hid1,LOC107710705,LOC107698779 coding downstream 432522 17884620 ~ 17920811 (-)
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding downstream 498171 17840179 ~ 17855162 (-)
LOC111192966 NA coding downstream 536251 17807074 ~ 17817082 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding downstream 555524 17782752 ~ 17797809 (-)
stk19 stk19,LOC106601743,LOC106601674 coding downstream 621634 17721129 ~ 17731699 (-)
LOC103034879 usp36,LOC107717487 coding upstream 133157 18489652 ~ 18536743 (-)
LOC103028836 NA coding upstream 182408 18538903 ~ 18550973 (-)
LOC103028209 NA coding upstream 211182 18567677 ~ 18575169 (-)
tspan10 NA coding upstream 230074 18586569 ~ 18590070 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding upstream 361007 18717502 ~ 18718630 (-)
G64948 NA non-coding downstream 24873 18327721 ~ 18328460 (-)
G64936 NA non-coding downstream 122850 18199063 ~ 18230483 (-)
G64938 NA non-coding downstream 131141 18203144 ~ 18222192 (-)
G64926 NA non-coding downstream 179343 18172532 ~ 18173990 (-)
G64904 NA non-coding downstream 328676 18024074 ~ 18024657 (-)
G64959 NA non-coding upstream 88131 18444626 ~ 18445767 (-)
G65067 NA non-coding upstream 203633 18560128 ~ 18560548 (-)
G65069 NA non-coding upstream 225113 18581608 ~ 18582016 (-)
G65066 NA non-coding upstream 263216 18619711 ~ 18623603 (-)
G65064 NA non-coding upstream 348645 18705140 ~ 18709436 (-)
G64886 NA other downstream 422163 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 664021 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 688772 17535296 ~ 17664561 (-)
G64492 NA other downstream 1465430 16882335 ~ 16887903 (-)
G64387 NA other downstream 1767686 16585065 ~ 16585647 (-)
LOC111192976 NA other upstream 268380 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 281812 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 541690 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 923807 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 949492 19305987 ~ 19370708 (-)

Expression


Co-expression Network