LOC103041847 (arf5,zgc:77650,LOC105916194,LOC106511461,LOC105888566,LOC105020167,LOC106609140)


Basic Information

Item Value
gene id LOC103041847
gene name arf5,zgc:77650,LOC105916194,LOC106511461,LOC105888566,LOC105020167,LOC106609140
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 30606472 ~ 30611944 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245009.3
CGCGCTGACGTCATTTCTTCCGCGTTGGCCTGGCCGTGGACGGAGATCagctgcagagacagagagcgGCTCCACTGCTGGAAACACCGGCTGATTTATTCTGTTATCAGCTCTACATCTCTCTGATCTCCTGACCATGGGAATCACCATATCCTCCCTGTTCTCTAAGCTCTTCGGGAAGAAGCAGATGAGGATACTGATGGTTGGTCTGGATGCTGCTGGAAAAACTACCATCTTATACAAGCTGAAACTGGGAGAGATTGTAACCACTATTCCAACTAttgGGTTCAATGTGGAAACTGTTGAATATAAGAACATTTGCTTCACTGTGTGGGATGTCGGTGGCCAGGACAAAATCAGACCGTTGTGGAGACACTACTTCCAGAACACACAGGGGCTTATTTTTGTAGTGGACAGCAATGACAGAGAGCGAGTAGCAGAGTCTGCAGAGGAATTGTCCAAAATGTTACAGGAGGATGAGCTGAGAGACGCAGTATTGTTGGTATTTGCTAACAAACAAGACTTGCCCAACGCCATGCCAGTGAGTGATTTAACAGACAAATTGGGTCTGCACAGCCTGCGGAGCCGAAccTGGCATGTTCAGGCTACATGTGCAACCCAAGGCACAGGTCTTTATGAAGGACTGGACTGGTTATCCAATGAACTGTCAAAGCGCTAagactggagagagagagagttaaagagaccacactggaaaaaaaaaacgaagaggaaaaacaactgaaagagagtgaaaggaaATAAGTGGAGAATGAAGATGTGCTGGACAAATATTTCACTTTTGGAGGAAAGTATTGTTAGGAGTATATCTGCTGGGTAGCATTTGGATGAACTTTTGCAATCAGTTCCtgttttgaaacatttctttctcatttttcttcctTCCTCAAGTGGCACTCCATACAGAAGGGTCTTAGACTGTTTATTTATGCCACTATAACCTTCAGCAGTACAATGTTTTAAGTTGCATGTTTTAAGAAAGACATAATCTTCTGTGTTTGTGAGAAGTCTTATTGTGTTTTATGGGTTTGGGTTGGGAGATAACTGgctgttcattaaaaaaagacagaaaggaaTGATGGGAGGCCAGGTTGAGCTCCTACTCCCCAGTCTTGAATTTGGTCATTCCACAATGATTCCTTTGAAGGCCAGATTCATTCCATTAGTATATGAAGGGCCTTTAGTCACATTAAAGGCCTTCATGATGcaataaacatctttttttctcttaaa

Function

symbol description
arf5 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in axial chorda mesoderm; axis; central nervous system; notochord; and polster.
zgc:77650 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in notochord and polster. Orthologous to several human genes including ARF5 (ADP ribosylation factor 5).

NR:

description
ADP-ribosylation factor 4

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07940 ARF5; ADP-ribosylation factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245009.3 True 1254 mRNA 0.43 6 30606472 30611944

Neighbor

gene id symbol gene type direction distance location
LOC103025686 drd4-rs,LOC108432516,LOC107591318,LOC107738833,LOC107557292,LOC107732971,LOC107699035 coding downstream 132579 30426459 ~ 30473893 (-)
LOC103025989 LOC108432518 coding downstream 199925 30377181 ~ 30406547 (-)
irf5 irf5 coding downstream 235104 30337537 ~ 30371368 (-)
LOC103043802 impdh1b,LOC108432555,LOC104968094,LOC107725554 coding downstream 325075 30236929 ~ 30281397 (-)
hmg20a hmg20a,LOC107560003,LOC107727687 coding downstream 761865 29834082 ~ 29844607 (-)
dennd6b dennd6b,LOC107732989,LOC107738816 coding upstream 12680 30624624 ~ 30642727 (-)
fam3c fam3c,LOC106576502 coding upstream 59390 30671334 ~ 30679232 (-)
LOC103040108 NA coding upstream 76997 30688941 ~ 30708138 (-)
cep83 cep83 coding upstream 98134 30710078 ~ 30719513 (-)
lrrc17 LOC108432517 coding upstream 112039 30723983 ~ 30748047 (-)
G67683 NA non-coding downstream 81378 30517322 ~ 30525094 (-)
G67682 NA non-coding downstream 108225 30497721 ~ 30498247 (-)
G67679 NA non-coding downstream 120558 30485652 ~ 30485914 (-)
G67676 NA non-coding downstream 137759 30447557 ~ 30468713 (-)
G67675 NA non-coding downstream 159530 30446740 ~ 30446942 (-)
LOC111192887 NA non-coding upstream 146955 30758899 ~ 30759854 (-)
G67841 NA non-coding upstream 386468 30998412 ~ 31005633 (-)
G67846 NA non-coding upstream 404039 31015983 ~ 31018605 (-)
G67847 NA non-coding upstream 407386 31019330 ~ 31022688 (-)
LOC111192888 NA non-coding upstream 461878 31073822 ~ 31076578 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 5564 30598368 ~ 30600908 (-)
fuk fuk other downstream 1139245 29443356 ~ 29467227 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other downstream 2473684 28121260 ~ 28132788 (-)
tmem258 NA other downstream 2570511 28032701 ~ 28035961 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 5075492 25516515 ~ 25530980 (-)
G67755 NA other upstream 190766 30802710 ~ 30805567 (-)
G67830 NA other upstream 363933 30975877 ~ 30992883 (-)
tmem60 tmem60 other upstream 468836 31080780 ~ 31091017 (-)
G67863 NA other upstream 481802 31093746 ~ 31149733 (-)
G68081 NA other upstream 1266163 31878107 ~ 31885940 (-)

Expression


Co-expression Network