LOC103045633 (lrrc4.1,LOC108432552,LOC107699068,LOC107557314,LOC107732976,LOC105904105)


Basic Information

Item Value
gene id LOC103045633
gene name lrrc4.1,LOC108432552,LOC107699068,LOC107557314,LOC107732976,LOC105904105
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15422001 ~ 15426787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245020.3
CCCCAAAACGTGCTgggggggtaaaaaaaaaaataaataaatacatcgtAAGCTGTTGCTGCTGCACACAGCAATGGAAGCAGGACTAAGGCAGGACCAGCAGGGttaaaaggagaagaaaaagggaaaaaaagaaacgcGAGAGCGAGAAAGAACGCTGTTGCCGTGGGGACGTACTTCTCCCTCCCAGCGCTCATCCGGCAGCAGCTCAAGTCGGGGGCTGTGGGTCTGAGCTCCCCAACGCTGCTCTCAGCTCAGGACACCGCAGGGGCTCTAGCTTCGCGCTATACGGATACTTTTCAGATCGACGCTACGTCACAGGAGGGGAGGAGAAGTGCGctctctcgcttgctctctcactcttactctcatTCCagggaacgagagagagagagggagagagagcaagcgcaaaagagagagagagcacgagcgTGCGAGCGAGCAAGCGCAAGAGTGTGCTCGAAAGCAGGAGAGAGCTTTCTCCACCAAGCAAGCCTTATTGGGCTCGTGCTGCCAGCAGTACCTTCCTTCGGACTCGCCGATTCCCTTTTCAAAAGAAAGTGACGGATTACCAGGAAGACTGCGGGAGGCAGATTGCTGCCGCTACCATTTGTGAATCTGCCGAGCTGGAGAGCGGAACTAGTTAAGGAAAGAAGCAACCCAGTGACTGCAGTGTCTCACACAGCCTTTTAAACTGACCGAGGCACAGAGGCAAATCAAGCAGACAAGGGACAAGCCTTGACAGAAGGAGGACAGCAACTGGGAAAGTGAGTGGAAAAGACTCTTAGGGGATTcaggcttttctttttttctttttttctttttaaaacaaaaggaTAGAGAAGCATCTGAAAAGACTGAGGAATTCTGATTCTTCTCTCCCCCCCCTTTTCCCCCCAAACCCTCCTCCTTTTCACCCTCTGCCTTGGTTTAGCGCATTTAGGCATTATACTATTATGGAGACTCAGAAAAGGCATTTAACAGCGGCTTCAAGCGGCAGTTTCCAAGGACATGCTTCTGCGGATGAGGTGACAGCGAACGACGGAGCACGTCTCTGGGAACAAAACTGGAATGTTATCATTGCCTAAAGCTCTGTGGGCCTGCAGCTTTTCTTTGGATGCTCTTCTTTGGATTTATTAGGGGCCATTTTGGTGTTCTTTTTCCTTTCaacaataaactaaattaaaaggcATTCCTTTTCACTGGGATATATGAAtctttgaaaaaaagaaaaaaaaaaaaaagaaacagaaaaagggagaaaataGCAGCATCTGTGATTGTGATTGCAAAAAAAGGACCTGTAAAACCACTGAGGTAGGTGTCTGGCCTTTCCAaagctttatatataaaaagtctGCCCTATTCTCGTTCATTACTCCTTGGCTTTTTTTTCTACCCATCCCCGTTGCTCTCGCACTTTGTTAATGAAGATGGCCCCACTAGTTCAGTAAATGGAAAAACAAGCTAGAGTGTTGCTTAACCCAGGGTAGGGACAGTTTTCTTTAAACTAGCACCAAACCCCTCCCCTCATTCCCCTTTCCACCTCCTCCTTTCTTCCCAATCACTACCGTCACCCCAAAGCCCACCCCCCATCCCTTCCCCCGCCCCCCAGACGATGCTGAATTATGAACGTGCCACATCATGAGTCTCCTGGGGCGGGTAGCTGTGCGTCGAGCCAGGAAAACCGCCCTGCTCTGTGTCGTCTTCCTCATGGTGCAAGTGTGCGTGGAGGTGGCGGCAGGAGCGGCGGGTCCCCAAGGCTGCCCGCCCGTCTGCTCCTGCAGTAACCAGCTCAGCAAGGTGGTGTGCACCCGCCGCGGTCTCACCCGCGTGCCCCCTGGCATCCCCACAAACACAAGGCACCTCAACCTGATGGAGAACGGCATCGAGGCAGTGGAGGCCGACTCCTTTCGACATCTCCACCACCTGGAGGTGCTTCAGCTGGGGCGCAATGCCATCCGACAGATCGAGGTAGGAGCCTTCAATGGCCTTACCAGCTTGAACACCCTGGAGCTCTTCGATAACCGGCTGACAGTAGTGCCTAGCGGCGCTTTTGAGTATCTGTCAAAGCTGAGGGAACTGTGGCTGAGAAACAACCCCATCGAGAGCATACCTTCTTATGCCTTCAACCGAGTGCCCTCTCTCATGCGTCTGGACCTAGGTGAGCTGAGAAAGCTTGAGTACATCTCTGAAGGGGCCTTTGAGGGTTTGGTCAACCTCAAGTACCTCAACTTAGGCATGTGCAACATCCGAGGAGAGATGCCCAACCTGAACCCGCTGCTAGCACTAGAGGAGCTGGAGATCTCAGAGAACTTCTTCCCTGAGATCAAACCCAGCTCTTTCAAAGGACTGACATCCCTTAAAAAGCTATGGATCATGAACTCTAAAATAGGGCTAATTGAACGCAATGCATTCGATGACCTGTCCTCTCTGGTGGAGCTAAACCTAGCCCACAACAATCTGAGTTCTCTGCCCCATGAGTTGTTTGCCCCTTTGAAGTTCTTGGTGGAACTACACCTCCACCACAACCCTTGGAACTGCGGCTGCGATTCATTGTGGCTAGCACGGTGGCTGCGTGACTACATCCCAACCAACTCGACCTGCTGCGGCAGATGTCATTCTCCAGCACACATGAGAGGTCGTCAGATGGTGGAGGTGGACAGAGGTGACACCGGTGCAATGCAGTGCTCTGCCCCCTTCATTGCAGATGCCCCAAGAGACCTCAATATTTCAGCAGAACGGGTAGCAGAGCTGCGATGTCGAACGGCGTCAATGTCGTCAGTGCGGTGGCTCCTACCAAATGGCACTATACTGACACATGCATCCAGTCATCCAAGGATAACCGTGCTCAATGATGGAACTCTAAACTTTTCGAACGTGCTTGTGGCCGACACAGGCATGTACACTTGCATGGTGTCCAACGCAGCAGGAAAATCCAATGCTTCGGCTTACTTAAATGTGAGCGCAGCTGAACTCAACACATCCAACCTCAGCTACTTCACTACTGTCACAGTGGAAGTGCTGGGACCGACATCTGAGCTGCCAAAAACCAAGACCACAACAACCACACCAGGTGCAAGTACAACGACCACAGcttctccctctgtctttcaACCGGTTTTCATCTCAACACCAACAGTACTTCTCCAAAGCACTGACATACCACCAAGTCGGCCGCCTGCAGTGCCAGCTTCAAAAGTTACAACAGGGAAACCTCCCAATCCAGCCAGCACCAGCCTGGACGAGGTCATGAAGACAACAAAGATCATCATTGGCTGTTTTGTGGCAGTGACACTGCTAGCAGCAATCATGCTAATAGTGTTCTACAAACTGAGGAAGCGGCATCAACAAAGGAGCACCGTGGCTGCAGCCAGGACTGTGGAGATCATTCCTGTGGATGAGGACCTACCACCACCTGCATCTGCTGCCAGTATACGAGGGGAGGGAGCACTAACACTACCAGAGATTAGGGACCATAACAGTATTCACAAGTTGGACTACATCACCCACAAATCAGACTACAGCTACCATAAACCCAAAATGGATTACAGCACTCACAAACCCAAGTCAGATTACAGCATCCACAAACCCAAACCTGACTTTAGCACTTATAAACCGAAATCGGACTACTGCATCCAGATTCCCAAGACAGACTACATTACACACAAGCCAAAAGAGGATTACAACACTTACAAACCACAAGTGGACTACAGCCCTCACAAACCATCCCCAGACTTCACTCACAGATCATTGCCTGATTATCACATTAAAAAGCCAGAGCAAAGTCCGTACAAACCTGGATATAACACCCACAAGCCTGATTACAAATCTCAAACAGTCAGACCAGACTTCAGCCCTTTCAAACCAGATTACAGCATTCACAAACCCAAAACAGACTATAGCACGCACAAAGCCAAAACCAATTACATTCCCCACAAAGCTGCCACCAACTACAGTCCCTTCAAGATGGATTGCAGTCCCTTCAAACCGGACTACAGTGCATTTAAGGCAGACTACAGCCCACTCAAAGCTGAATACATCAGCCACAAACCAGACTTTAGCCCCCACAAGTCTAAAATGGATTACAGTCCTCACAAAGAGGACTACAGCCCCCATAAGCTCAACTATAGCACCCTAAAGCCCAAGTACAACACCTACAAGCCTGGAGGACATGCAGCTAAATGGACAGAAAGCAACAGCATTGGAAACTCTCTTCCTCGAACCTTGCCCAGTACCATCACCACTATCTCAGAGCCCTTCGTCATGAAAACACATGCGAAGGAGAAAGTACAAGAGACTCAAATCTAGCCCTCGACAACCTGCTCCCAAAAGAGAAATTGTGGCCAAATCACGGCCAGAAATATATCCCTAATCCCCTTAAAACACTCCCAAGACACCCAATGAAAACATGCAATAGAATgcacaaagagagaaaaaaaaaaaaagactgttcttttttttttgtacagcgTGCAAATCCTAGAGACTGATTTCTTGATGTAcatgcttataaataaataaataaatatatatatatggagagaaaaaaaaaatcagaaaaactatCATGGGCTGTCATAGAGAAGcagattatattaaaaataaattaaactattttCTAACTTGTAACTTCTATTTAAAAAGACAAGTTGTTTAAAGATGCTGTcctgactttaagaaatgagggTAGTGTTTTCAAAGGGCATTCTGTGTGATTTCTAAACCATGCTACAGAGAATGCagtgaaaagaagaaaaaaagaaaagaaaaaaaaacattta

Function

symbol description
lrrc4.1 Predicted to be involved in modulation of chemical synaptic transmission and synapse organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in glutamatergic synapse and plasma membrane. Predicted to be integral component of postsynaptic density membrane. Is expressed in basal plate midbrain region; nervous system; and neural plate. Orthologous to human LRRC4 (leucine rich repeat containing 4).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 4-like

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245020.3 True 4787 mRNA 0.48 1 15422001 15426787

Neighbor

gene id symbol gene type direction distance location
fam200b NA coding upstream 421419 14997118 ~ 15000582 (+)
LOC111192957 NA coding upstream 694646 14721032 ~ 14727355 (+)
taf3 taf3,LOC107748456,LOC107555823,LOC107675973 coding upstream 1225455 14102939 ~ 14196546 (+)
atp5c1 atp5c1,LOC107728502,LOC107748457 coding upstream 1323455 14090332 ~ 14098546 (+)
itih2 itih2,LOC107748478,LOC107666937 coding upstream 1340888 14056785 ~ 14081113 (+)
LOC111192874 NA coding downstream 137230 15564017 ~ 15571205 (+)
ccdc87 NA coding downstream 477555 15904342 ~ 15923062 (+)
LOC103046551 LOC108432559 coding downstream 496939 15923726 ~ 15953932 (+)
LOC103027800 LOC108432561 coding downstream 571414 15998201 ~ 16101524 (+)
LOC103046856 LOC108432562,LOC108279529,LOC107757284,LOC107581848 coding downstream 686072 16112859 ~ 16141399 (+)
G64087 NA non-coding upstream 232032 15147026 ~ 15189969 (+)
G64091 NA non-coding upstream 298780 15123011 ~ 15123221 (+)
G64088 NA non-coding upstream 330808 15090971 ~ 15091193 (+)
G64086 NA non-coding upstream 349202 15072539 ~ 15072799 (+)
G64083 NA non-coding upstream 364610 15057131 ~ 15057391 (+)
G64141 NA non-coding downstream 199789 15626576 ~ 15629978 (+)
G64144 NA non-coding downstream 238381 15665168 ~ 15672932 (+)
G64159 NA non-coding downstream 318294 15745081 ~ 15749573 (+)
G64205 NA non-coding downstream 529222 15956009 ~ 15956216 (+)
G64233 NA non-coding downstream 717498 16144285 ~ 16144718 (+)
G64015 NA other upstream 676919 14744735 ~ 14745082 (+)
gata3 gata3,LOC107555822 other upstream 1179767 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 2260634 13156226 ~ 13161367 (+)
G63432 NA other upstream 2953099 12468050 ~ 12468902 (+)
G63051 NA other upstream 5771914 9646579 ~ 9650087 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 968539 16395326 ~ 16426623 (+)
G64289 NA other downstream 1012433 16439220 ~ 16442449 (+)
G64431 NA other downstream 1326256 16753043 ~ 16753560 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 1406503 16833290 ~ 16888195 (+)
G64449 NA other downstream 1446300 16873087 ~ 16875941 (+)

Expression


Co-expression Network