LOC103045938 (LOC108432519)


Basic Information

Item Value
gene id LOC103045938
gene name LOC108432519
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15578874 ~ 15624348 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245021.3
TGTAGTGAGAGCTCGGACCTTATAAGCAGGTAGAAGCGCGCGCTGCACTGAGGAGATGAGAGCTGGAATAATGTGGATAATCCAGACCGTCCTGTGCGTCCTGCTCTCCGCCAGCGTGGGGTGCAGGAAGCAGATGCTGCAGAGGTACCAGAAGAGTGAGGACAGCAGACTGGTGTGTTCAGACTGTGGTCAGTCTGCTCGAGCCCGGAGGCTAGCGTTGGAGGACTGTGCTCAGAAATGCAGCAAGAGCAAGAAGTCCTGCAGAGCGTTCAACTATGACCACATTAACGGGACATGCCACTTGCTTTCGTTCGACCGTTTCACAGAAGGAGCTCAGAAGGAGCGGCGAGCCAACCATGACCTTTACGAGAAAAAAGACTATGTGCGCGAGTGCATTGTTGGTTCAGGTGTGAACTACAAGGGACGGAGATCGGTTACAAGGAGTGGAGTCTCATGCCAAGCCTGGAATGTATCAGTACCCCATGAACACAATTACAAGCCTGCCAAGCACAAGAAGTTTGACCTGCGTGAGAATTTCTGCCGTAACCCAGATAAAGATGTAAGTGGACCCTGGTGCTTTACCAACTCCTCAGAGACTCGATATCAGGAGTGTGGGCTGCCCCAGTGCTCAGAAGTGCAGTGTATGCAGTGTAATGGGGAAGCATACAGAGGTCCAATGGACCACACTGAGAGTGGGAAAGAGTGCCAGAGATGGGACTCACAAAGAcctcacaaacacaaataccAGCCTCACAGgcACTCTGGCAAAGGACTGGATGATAACTATTGCCGCAATCCCAACAATGACGTGCGTCCATGGTGCTACACGACGGACAAGAACACACGCTGGGAATACTGCAACATTAGTCTCTGTGATTCAGATCACACAGTGGATGAGGATGTGACCACTGCATGTTTTCGGGGTCAGGGGGAGCGCTATCGGGGAAGGGTTAACGTGACCCCCAGCGGAGCGACCTGTCAGCGCTGGGACTCTCAGTTTCCACACAATCATACCTACACCCCTCACAACTACAAGTGCAAagacCTGCGAGAAAACTACTGTAGAAACCCTGACGGCTCTGAAATCCCATGGTGCTTCACCACAGATCCGAAAGTGCGTAAAGCCCTCTGTACCAGCATCCCCAGGTGTTCGGAGACCCAGGAAAAACCAGAGTGCTACGAGGACAATGGGGAGAGCTACCGAGGCAATGTGTCAAAGACCAGATCGGGCATTCCCTGCGGACTCTGGTCAGACCACACATACAGcAGGGATACACGCTCCGGGACAGCAAGTGCAGGGTTGCAGTTGAACTTGTGCAGGAATCCAGACAGAGATAAGCACGGGCCGTGGTGCTACACTTCCAACTCCTCCATTCCCTGGGATTACTGCGGATTAGAGCGATGTAAAACATCAAAGCTTGAGCAAGTGCAAACACCCAAGCCTTCCTGTTTTGTGCATAAGACCACTCGAATTGTTGGGGGGACGCAGGTGCAGCGGGCAGAGGACGGAAGTTGGGTGGTCAGCATTCAAAAAGGGAACAAGCACTGGTGTGGAGGATCTCTTATCCGAGAGGAGTGGGTCCTTACTGACCAGGAATGCTTCCCTTCATGTGTTCCTGATCTCTGGGAGTTCAGCGTGCACGTGGGTCTCCTGCACCTCAATGACTCCACACACACGAAAGGGCTCCGCATCGCACACATGGTCTGTGGACCTGAAGGCTCCAACCTGGCCCTGCTCAAACTTGTCCATCCAGCCCCGCTGTCGGAGCATGTGTGGACTGTGCAGTTACCTGTGGCTGGATGTGAAGTGTCAGAAGACTCGCAGTGCCTGATGTACGGTTGGGGAGAGACGAAAGCCACAGGTCATGAAGGAAGCCTGAAAATGGTGCAGCTTCCCATGGTCAGCAATGATAAATGCTCTCAGATCCATGACGGCAGCCTGCCTATTACAGAGACTAAAGTCTGTGCTGGAGGACAGAAGGAccagggtgtgtgtgagAAAGACTATGGTGGCCCATTGGTGTgtcaagaaagagagagcaaggtcatcATCGGAGTAAGCATCCACGGCAGGGGCTGCGCCATTGCCCGGCGGCCTGCTATCTTCGTCAATGTGGCCTATTACTCAGAGTGGATTCACAAAGTCTTCAAACACTATTCGGACATTGAGAAAAGTTACTAGAACTGTAACTTTCTTTCTTAGATTCCCTTCGGGATGTACTGGGATGTACAGCATGGGTGCAGTATGTACAACGTCCACGCATCTGACGATTCCTCAGCATGTACAAGACCACGACAATGGCATTATCAATGGTAAGCCATACTACTGATTTTGCAGCTCGTGCCAAAGCAACCATGTCAGGTTGAGAATGGATGTTCTGATGACAGACCGCAAAGGAAGCCGCAAGGAAACCTCAACTTGTTGCTTTAAGAAGAGAGAACAGTAAGAAGAGAGTTCAGCGAGTTCAGACAGTGTCTACTTGTCCTTTCTAAATCAGCAAACAATCAGCAAAAATTATATTAGTTTTGATTAAATACTTTTCTgagagtttgttttttttctggctgaGTGCTTATGAATCTGGACTCACAGGCACAGATGTAGTAggaaaaaaggtgaaaaaggaACCGAAGAAAAAGGAATTCACAGCGATAAAAGATAACGTCTGTCAGAGGCATTAGACCAAAGCATCGTTAACTCACTCTCTATTGTTCTCCTGGAGATACTTGAATACAGCATAATGACCAGAAGTATCCAGATTCAGGCCAGAGGTTTGGTTATTCACTTTGAGGGCCAAGAGGGCCTTTTCCCTTCAGTTTCCAGGAGGCCAAAGAGGGGTACAGAAAGAGGTCAAACAGTTCTGCAGAAATCTTTCAAGAACTgctacagtagtagtagtagttcgTGCACCAGCAGGGAGCCACGCCACTAGAGTCAGTTCTTTGAAATCAGAAGGTCAGATTACAGTGTCACTATTTCCTGGAAAAGCTGCCTTTGTCTTACCCTAGAACTGATGCCGTAGATTTATGTAGAGTATGTTCAGTAATGGAGAGTGTTACATATCTTGCCTTACTCCAGTATGGAGCGTACACTGGCCCTTTTTGGGGCTGTGCATTTACTAtgtttggttattttttttgtgctctTGTGAGTATATTGCTGGTACTCTATAGGTCTCATAGATCTGGCTAGCTTACAAATATGTGAAGGTCTACCCATTCTCATGGTGTGTTGTGTGGAAACTGTgaggtatttatttataatgaaatCTTCTGGATGGAGGAAGATTGTTCCAGCAATACAGTATTATGTTTCGAAAGTGTTAGTGTTAATTTTGGCATGAACTTAAAAGACGTGTCTTTATGAGAGGAACGAAGGGATAATATATGTTTCATAAGCACAAcatttgtttatgtaaaatgaCTCCCCACAGGTCTATAAACCGTAAACCATACATTTCTGACTCTCAACAGAGGCTAATATTAGCTGCATACCTCCGATTGCAAAAAGTACTGAAATAAACTAGCAGAGCGGTTTTACAGGTTTGCTTAACCGACACAAAACATgccatatttattatatgtggTCATTAATTGCTATGGCCATTTTATGAgctaaataaacacagatgtatcattatgtaaatattattttatataaactgcATTCCAAAATACCCCTACATTGTTTTGATTTTGTACCCATTTTTCTTTACTACATGTTGTCATTCACTTTATGAGCTGCTACACTAGGCTGACATGTCTCACTACAGCAAgtcatgttcattttttttatttattttaaagggacGACTTCAGTGACTGAGTTTGCTggctttttctgtaaataattgAGACTTTTGTCAGACAATATGTTTAGAACTTCTGTAATATTaaattttgtattaaattaaattgtaagtaaaatatatttt
>XM_022671392.1
TGTAGTGAGAGCTCGGACCTTATAAGCAGGTAGAAGCGCGCGCTGCACTGAGGAGATGAGAGCTGGAATAATGTGGATAATCCAGACCGTCCTGTGCGTCCTGCTCTCCGCCAGCGTGGGGTGCAGGAAGCAGATGCTGCAGAGGTACCAGAAGAGTGAGGACAGCAGACTGGTGTGTTCAGACTGTGGTCAGTCTGCTCGAGCCCGGAGGCTAGCGTTGGAGGACTGTGCTCAGAAATGCAGCAAGAGCAAGAAGTCCTGCAGAGCGTTCAACTATGACCACATTAACGGGACATGCCACTTGCTTTCGTTCGACCGTTTCACAGAAGGAGCTCAGAAGGAGCGGCGAGCCAACCATGACCTTTACGAGAAAAAAGACTATGTGCGCGAGTGCATTGTTGGTTCAGGTGTGAACTACAAGGGACGGAGATCGGTTACAAGGAGTGGAGTCTCATGCCAAGCCTGGAATGTATCAGTACCCCATGAACACAATTACAAGCCTGCCAAGCACAAGAAGTTTGACCTGCGTGAGAATTTCTGCCGTAACCCAGATAAAGATGTAAGTGGACCCTGGTGCTTTACCAACTCCTCAGAGACTCGATATCAGGAGTGTGGGCTGCCCCAGTGCTCAGAAGTGCAGTGTATGCAGTGTAATGGGGAAGCATACAGAGGTCCAATGGACCACACTGAGAGTGGGAAAGAGTGCCAGAGATGGGACTCACAAAGAcctcacaaacacaaataccAGCCTCACAGgcACTCTGGCAAAGGACTGGATGATAACTATTGCCGCAATCCCAACAATGACGTGCGTCCATGGTGCTACACGACGGACAAGAACACACGCTGGGAATACTGCAACATTAGTCTCTGTGATTCAGATCACACAGTGGATGAGGATGTGACCACTGCATGTTTTCGGGGTCAGGGGGAGCGCTATCGGGGAAGGGTTAACGTGACCCCCAGCGGAGCGACCTGTCAGCGCTGGGACTCTCAGTTTCCACACAATCATACCTACACCCCTCACAACTACAAGTGCAAagacCTGCGAGAAAACTACTGTAGAAACCCTGACGGCTCTGAAATCCCATGGTGCTTCACCACAGATCCGAAAGTGCGTAAAGCCCTCTGTACCAGCATCCCCAGGTGTTCGGAGACCCAGGAAAAACCAGAGTGCTACGAGGACAATGGGGAGAGCTACCGAGGCAATGTGTCAAAGACCAGATCGGGCATTCCCTGCGGACTCTGGTCAGACCACACATACAGGGATACACGCTCCGGGACAGCAAGTGCAGGGTTGCAGTTGAACTTGTGCAGGAATCCAGACAGAGATAAGCACGGGCCGTGGTGCTACACTTCCAACTCCTCCATTCCCTGGGATTACTGCGGATTAGAGCGATGTAAAACATCAAAGCTTGAGCAAGTGCAAACACCCAAGCCTTCCTGTTTTGTGCATAAGACCACTCGAATTGTTGGGGGGACGCAGGTGCAGCGGGCAGAGGACGGAAGTTGGGTGGTCAGCATTCAAAAAGGGAACAAGCACTGGTGTGGAGGATCTCTTATCCGAGAGGAGTGGGTCCTTACTGACCAGGAATGCTTCCCTTCATGTGTTCCTGATCTCTGGGAGTTCAGCGTGCACGTGGGTCTCCTGCACCTCAATGACTCCACACACACGAAAGGGCTCCGCATCGCACACATGGTCTGTGGACCTGAAGGCTCCAACCTGGCCCTGCTCAAACTTGTCCATCCAGCCCCGCTGTCGGAGCATGTGTGGACTGTGCAGTTACCTGTGGCTGGATGTGAAGTGTCAGAAGACTCGCAGTGCCTGATGTACGGTTGGGGAGAGACGAAAGCCACAGGTCATGAAGGAAGCCTGAAAATGGTGCAGCTTCCCATGGTCAGCAATGATAAATGCTCTCAGATCCATGACGGCAGCCTGCCTATTACAGAGACTAAAGTCTGTGCTGGAGGACAGAAGGAccagggtgtgtgtgagAAAGACTATGGTGGCCCATTGGTGTgtcaagaaagagagagcaaggtcatcATCGGAGTAAGCATCCACGGCAGGGGCTGCGCCATTGCCCGGCGGCCTGCTATCTTCGTCAATGTGGCCTATTACTCAGAGTGGATTCACAAAGTCTTCAAACACTATTCGGACATTGAGAAAAGTTACTAGAACTGTAACTTTCTTTCTTAGATTCCCTTCGGGATGTACTGGGATGTACAGCATGGGTGCAGTATGTACAACGTCCACGCATCTGACGATTCCTCAGCATGTACAAGACCACGACAATGGCATTATCAATGGTAAGCCATACTACTGATTTTGCAGCTCGTGCCAAAGCAACCATGTCAGGTTGAGAATGGATGTTCTGATGACAGACCGCAAAGGAAGCCGCAAGGAAACCTCAACTTGTTGCTTTAAGAAGAGAGAACAGTAAGAAGAGAGTTCAGCGAGTTCAGACAGTGTCTACTTGTCCTTTCTAAATCAGCAAACAATCAGCAAAAATTATATTAGTTTTGATTAAATACTTTTCTgagagtttgttttttttctggctgaGTGCTTATGAATCTGGACTCACAGGCACAGATGTAGTAggaaaaaaggtgaaaaaggaACCGAAGAAAAAGGAATTCACAGCGATAAAAGATAACGTCTGTCAGAGGCATTAGACCAAAGCATCGTTAACTCACTCTCTATTGTTCTCCTGGAGATACTTGAATACAGCATAATGACCAGAAGTATCCAGATTCAGGCCAGAGGTTTGGTTATTCACTTTGAGGGCCAAGAGGGCCTTTTCCCTTCAGTTTCCAGGAGGCCAAAGAGGGGTACAGAAAGAGGTCAAACAGTTCTGCAGAAATCTTTCAAGAACTgctacagtagtagtagtagttcgTGCACCAGCAGGGAGCCACGCCACTAGAGTCAGTTCTTTGAAATCAGAAGGTCAGATTACAGTGTCACTATTTCCTGGAAAAGCTGCCTTTGTCTTACCCTAGAACTGATGCCGTAGATTTATGTAGAGTATGTTCAGTAATGGAGAGTGTTACATATCTTGCCTTACTCCAGTATGGAGCGTACACTGGCCCTTTTTGGGGCTGTGCATTTACTAtgtttggttattttttttgtgctctTGTGAGTATATTGCTGGTACTCTATAGGTCTCATAGATCTGGCTAGCTTACAAATATGTGAAGGTCTACCCATTCTCATGGTGTGTTGTGTGGAAACTGTgaggtatttatttataatgaaatCTTCTGGATGGAGGAAGATTGTTCCAGCAATACAGTATTATGTTTCGAAAGTGTTAGTGTTAATTTTGGCATGAACTTAAAAGACGTGTCTTTATGAGAGGAACGAAGGGATAATATATGTTTCATAAGCACAAcatttgtttatgtaaaatgaCTCCCCACAGGTCTATAAACCGTAAACCATACATTTCTGACTCTCAACAGAGGCTAATATTAGCTGCATACCTCCGATTGCAAAAAGTACTGAAATAAACTAGCAGAGCGGTTTTACAGGTTTGCTTAACCGACACAAAACATgccatatttattatatgtggTCATTAATTGCTATGGCCATTTTATGAgctaaataaacacagatgtatcattatgtaaatattattttatataaactgcATTCCAAAATACCCCTACATTGTTTTGATTTTGTACCCATTTTTCTTTACTACATGTTGTCATTCACTTTATGAGCTGCTACACTAGGCTGACATGTCTCACTACAGCAAgtcatgttcattttttttatttattttaaagggacGACTTCAGTGACTGAGTTTGCTggctttttctgtaaataattgAGACTTTTGTCAGACAATATGTTTAGAACTTCTGTAATATTaaattttgtattaaattaaattgtaagtaaaatatatttt

Function

NR:

description
PREDICTED: hepatocyte growth factor-like

GO:

id name namespace
GO:0001764 neuron migration biological_process
GO:0006508 proteolysis biological_process
GO:0021707 cerebellar granule cell differentiation biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K05460 HGF; hepatocyte growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245021.3 True 3935 mRNA 0.46 18 15578874 15624348
XM_022671392.1 False 3932 mRNA 0.46 18 15578874 15624348

Neighbor

gene id symbol gene type direction distance location
snd1 snd1,LOC107738807,LOC107732977 coding downstream 24242 15270863 ~ 15554632 (-)
kin kin coding downstream 1489322 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 1581381 13922539 ~ 13997493 (-)
LOC103038708 NA coding downstream 1823392 13712234 ~ 13755482 (-)
LOC103026945 LOC108427039 coding downstream 1886024 13646396 ~ 13692850 (-)
akap14 NA coding upstream 301198 15925546 ~ 15927271 (-)
LOC111192960 NA coding upstream 723211 16347559 ~ 16351713 (-)
scaf11 NA coding upstream 806952 16431300 ~ 16450766 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding upstream 835392 16459740 ~ 16469357 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding upstream 904857 16529205 ~ 16577816 (-)
G64085 NA non-coding downstream 519231 15058374 ~ 15059643 (-)
G64064 NA non-coding downstream 574997 15003669 ~ 15003877 (-)
G64063 NA non-coding downstream 578849 14999809 ~ 15000025 (-)
G64054 NA non-coding downstream 598917 14979722 ~ 14979957 (-)
G64048 NA non-coding downstream 621467 14884012 ~ 14957407 (-)
G64156 NA non-coding upstream 40828 15665176 ~ 15668027 (-)
LOC111192959 NA non-coding upstream 266074 15890422 ~ 15907327 (-)
G64214 NA non-coding upstream 336590 15960938 ~ 15961286 (-)
G64247 nrcam non-coding upstream 476075 16100423 ~ 16105219 (-)
G64273 NA non-coding upstream 516308 16140656 ~ 16141428 (-)
G64060 NA other downstream 584042 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 586144 14990229 ~ 14992730 (-)
G64034 NA other downstream 792725 14785321 ~ 14786149 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 1691006 13841193 ~ 13887868 (-)
LOC103025415 iqsec3,LOC107689235 other downstream 2551376 12805971 ~ 13027498 (-)
LOC103027187 NA other upstream 46958 15671306 ~ 15867795 (-)
G64387 NA other upstream 960717 16585065 ~ 16585647 (-)
G64492 NA other upstream 1257987 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 1910948 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 2054466 17678814 ~ 17689312 (-)

Expression


Co-expression Network