LOC103046551 (LOC108432559)


Basic Information

Item Value
gene id LOC103046551
gene name LOC108432559
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15923726 ~ 15953932 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245022.3
CATAAGAAGCTGAGCTGGGCTCAGGTAATCATAATGAGAGGCACCTGACaaacctttaatattaatcttgaTGGTTGTCACAGGAATTAAACAATATTGGAGGGGCATATCTCCTATTATACACTAGTACTCTAGCTAAAGTCGTGAAAGGAACAGAGCCTGTAGTACATATAAAGACCACGACTTTTTTCCAGTAGGTGGTGATATACATGTTTCTTATCAAACTGAACAGAAGCAGAGAAAGAAACCTCCCATTGCTGCCTGTAGCAAACAAAGCTAACCAGCATCTGACTTGTTTACAAAGCCTTTTGGCTTCAGtggaaaccttttttttttcaacctgACTGACTTCTGAACAAAAGCAAGGGAGCCGAGAAGACACGGgTGTTTTATACAATGGAAATCACCATGGGATGCATTAGGATGAAAAGAGTTTGTTTGGCAGTTTTTATCGATCCACATCTAACCACAAATGTAATGAAAATCTGAGTGAGATGAGGGCATTGGGAGGCCGGGGACTGAGGAGCTGAAGATTTTAATTGAACTAAACAGTCTTATAGTGACCTCACCGCATGTCGCGAATCAGGAGTACACTGAACACTGTCACTAAAGCTGTGAGCGGGACAGTGAACACAGAACTGTTCTCCAAGATAACACGCCTCCGGCCCAATGCTGCCCCTGTGGACAAAGCTGTAGAGGTCAAAATGGAGTGCCCTGAGTCAGAACCTGCTGCAGTTATGACCGTGGCAGCACCTCAACAACTGAGGCCCAACGAAGAGGAGGTGAAAAGCAGTGAAGTCAGGGAACAACCCCCCAAACCTCAATTAAGCCTGGATATGCCCCTGAGAGCTACATCCACAGCAGTAGCCAAACAGACACTGCAGCGGTTCCAGCCCTCTGCTTTTTCCACAAACATGGATGAAACCTACAACCACTTGGCAGAACATGTCAACACATACTTTGGAAGTGATGCCCAGGAAGAGAAGAGGTCTCACCAGACAAATGGAGATCCAAGCATCCATGCACCATCAAGCACTGCTCACTTCAGCGGGACCAAAGAGCATATTCCTGTGATCGCGCCTGTGGGTCACAGAGTCGACTTGGAGCCGCCCACATCTCCACCTGCCCCTGTACCAAGTACTAAATCTCCAGAGCACCCTGCCCTTCCAGAAGAGGAGAGTGTAAAATCACCTTCTCCACAGAAGAAAGGGATCAGCCAGTACCTCTCTTACAAAAGTCCCAGCATGCAGGCCTTTGTGGGGAATTACATCGCTCCTCTGGTTCCCAAATTCAGGGCTGATTCAAAAAGCTCGggtgcagaaaaagagaaagctcCCGAGGCGTCTCAAGTGGTTTCTCAGGACACGAAGGATGCAGAAAGCAAAGAGCGGAAACAGGCAGAGGAAAAGGCCCAACGGCTGTTGTCCCAGAGAGAGAAGATCATAGCACGTGTGAGTGTGGATAACAGGACCAGAGCACTGGTGCAGGCTATAAAGAGGGTGACTGATGTGAAGATCACCATTAGCAGAGTGGAAGAGCTCAGCTTCCATCTACTGGAGTTCCCTGAGACCAGAGGGGTGGCAGTCACTgAGAAAGTTATTCCGTGTTTGCTTCGGTTGCGTCAGGCCCGGGATGTCAGACTACAGGCAGCAGTGAGGCAGGCCCTTGCCCTGGTGGGCTATACCGACCCAGTCAAAGGCAGAGGCATTCGTGTCCTCTCCATTGATGGAGGAGGGACTAGgggcCTGGTTGCGCTGCAGACTTTGCATAGGCTGGAGAAACTCACTGGAAAGCCCATCTACCAGCTGTTTGATTACATCTGTGGAGTCAGTACAGGTGCTATACTGGCCTTCATGTTAGGAGTGTTCCAGATCCCTCTGACGGAGTGTGAGGTACTTTATAGGAAGCTTGGCTCTGATGTCTTCAAACAGAATGTGATTGTTGGCACAGTGAAGATGGGCTGGAGTCATGCTTTTTACGACAGCCAAACCTGGGAGGAGATCCTTAAACAGAGAATGGGACCTAGTCTACTGATTGACACTGCCAAAGATCCAAACTGCCCAAAGGTGGCAGCAGTGAGCACTGTAGTGAATAGAGGGCTGCCACTGAAGGCTTATGTGTTCAGGAACTACAACTTCCTTCCAGGGGTGCGCTCCCACTACCTGGGCAGCTGCCAGCACAAGATGTGGCAGGCTCTCCGAGCATCGTCTGCAGCTCCAGGATACTTTCAGGAGTATGTGCTTGGGAGTGACTTGCATCAGGATGGCGGTCTCCTCATCAACAACCCCACAGCACTGGCAATCCACGAGTGCAAGTGCTTGTGGCCCAACACTcctgtgcagtgtgtggtgtctCTGGGTACCGGCCGCTATGAAACAGCTGGGAAAAGCAGCTCCGGTACTTACACCAGCCTGAAGACCAAGCTCACCCATGTCATCAGCAGCGCCACAGACACTgaggAGGTCCATACGATGTTGGACGCCCTCCTTCCTCCTGACACCTACTTTCGCTTTAACCCCTATATGAGTGAAGATATCCCACTGGACGAAAGCCGGGCTGAGCGACTGAACTTCCTGCAGGCTGAGGGCCAGCGCTACCTGGAGCGCAATGAGCCCAAGCTGAAAAAAGCTGCCAGTGTTCTTTCTCAAGAGAAGAGCACCATCCAGAAGCTGGCTGAGTGGGCTCAGCTGAAAGCAGACATGTACGATGGCCTTCCCTTCCGCTCGAAACTTTAACGCTTCAGTCGAGACAATGTCTTGCATCTCTTGAAATAAAAGTGTGTAGAAGCACCATGTACCAAGAAACATGGTACAGTAGAAATGGTCATAAGgtcatttaaacattaattgaTCTGACTGGTACACTGCGGGAATTTTATTTTTGACCTTAGAAAGATTGATGTACATGGAAACTCGGCTCGTCATGAGTGTTGACTAGTTATGTTTTTATTGATAGGGTGCACCGTTCTCTGACCCGTCTCTGATTTGAGTTTATGACTGCTGAAAGCACTTTTATGGagttaaaaactttaaacaagAACTTGATCATTTAAACAAGAGCTTGATGTTGCAAGTTTTAATGTTCCTGCACTTTTAACGAATACCTACCTGATACGATCTGCCTGTTTGTGATCATGTTGTATCGTGTGTAGAAGTGTCTAGTTTTAGAAACAAGCCATAGTCTTGTTTGCGTCTCATCAGATTTGTCGTCATCAATGTTCTGCACACGTACTTTTGTTGATTCCTGCCACTTCAAAAGCAAGTTGCATTCACCTGAACTTGAATCTCTTAGCATGCACTGTAATTTAAAATGCACTAAGGTATGATTTATGTATAAATCGCTGGCTGAAAGATTTCATATGAAGCTCAAATTAGTAGTAAGTTGACTATCATcagttgttttttaatgatttttattgaaataaaaaggaaatagagGGAATATGTTGGCTGATAATACTGATAATAGAAAGTATTTAGACTTTTCACTAAGAACATTATGAGCAGCTTGAATGCAGTTGAATTAATGCCAAATTTCTTTACACTAAAGCTAACCTTATTGTATTATAAGGTGTTGTGTAAGACGTCCAGTTCTGTGGTGTCAGGAATTCACACTGAATTATGTTTTGAAGCCTTGATGGTTATGTCATTATACCCttaattttatttgtctttAGTTGCTTGAACCTGGAAAATATGATCCTGTTGTTTTGATTagtatgtatatactgtatatggtgTGTCCTTAAAAATCCATATTCCAGATGGAGTTTACACTAATAATTAACAGTAGAACGTTTGGAAGATGCTGAGTTTTCGGAGAGAATTAAAAGTTTTAGTTATATTCTAGAATATCTGTGTGCATCCTGTAAGTTTCCAGTAACTGGGAGGATAAGGAGGAGTAAAAACAGATTTGTTTacaaagctaaataaataaagaaataaagaaataagcaCAGTAACACATGA

Function

NR:

description
PREDICTED: calcium-independent phospholipase A2-gamma-like

GO: NA

KEGG:

id description
K16815 PNPLA8; calcium-independent phospholipase A2-gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245022.3 True 3968 mRNA 0.45 10 15923726 15953932

Neighbor

gene id symbol gene type direction distance location
ccdc87 NA coding upstream 664 15904342 ~ 15923062 (+)
LOC111192874 NA coding upstream 352521 15564017 ~ 15571205 (+)
LOC103045633 lrrc4.1,LOC108432552,LOC107699068,LOC107557314,LOC107732976,LOC105904105 coding upstream 496939 15422001 ~ 15426787 (+)
fam200b NA coding upstream 923144 14997118 ~ 15000582 (+)
LOC111192957 NA coding upstream 1196371 14721032 ~ 14727355 (+)
LOC103027800 LOC108432561 coding downstream 44269 15998201 ~ 16101524 (+)
LOC103046856 LOC108432562,LOC108279529,LOC107757284,LOC107581848 coding downstream 158927 16112859 ~ 16141399 (+)
LOC103047366 LOC108415391 coding downstream 264896 16218828 ~ 16314999 (+)
LOC103026270 zmp:0000000711,LOC108411497,LOC108275404 coding downstream 661639 16615571 ~ 16651658 (+)
LOC103042039 ern1,LOC102793659 coding downstream 763120 16717052 ~ 16764567 (+)
G64159 NA non-coding upstream 174153 15745081 ~ 15749573 (+)
G64144 NA non-coding upstream 250794 15665168 ~ 15672932 (+)
G64141 NA non-coding upstream 293748 15626576 ~ 15629978 (+)
G64087 NA non-coding upstream 733757 15147026 ~ 15189969 (+)
G64091 NA non-coding upstream 800505 15123011 ~ 15123221 (+)
G64205 NA non-coding downstream 2077 15956009 ~ 15956216 (+)
G64233 NA non-coding downstream 190353 16144285 ~ 16144718 (+)
G64237 NA non-coding downstream 195836 16149768 ~ 16149974 (+)
G64279 NA non-coding downstream 213132 16167064 ~ 16167378 (+)
G64292 NA non-coding downstream 406971 16360903 ~ 16368394 (+)
G64015 NA other upstream 1178644 14744735 ~ 14745082 (+)
gata3 gata3,LOC107555822 other upstream 1681492 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 2762359 13156226 ~ 13161367 (+)
G63432 NA other upstream 3454824 12468050 ~ 12468902 (+)
G63051 NA other upstream 6273639 9646579 ~ 9650087 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 441394 16395326 ~ 16426623 (+)
G64289 NA other downstream 485288 16439220 ~ 16442449 (+)
G64431 NA other downstream 799111 16753043 ~ 16753560 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 879358 16833290 ~ 16888195 (+)
G64449 NA other downstream 919155 16873087 ~ 16875941 (+)

Expression


Co-expression Network