LOC103047680 (LOC108439417)


Basic Information

Item Value
gene id LOC103047680
gene name LOC108439417
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6782248 ~ 6793867 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245025.3
TGGTCTGCAGTGGTTTGGTGGGGGGATGGTGGTCATGTGTCTGGGGGGCTGCAGGGTGGAGTGTTTAGCTGTAGCTGCTCGGTATGTTTGTTTGGTGGAGCTGAAGGCGGACATGTGGAGATGTAGAGAGTCTCCAGATGCGGGTTTCGggttggtgagtgagtgaggaatAATGCGGAGGTATGTGCGGGCTCTGGTCCTGTGCACGGTTCTGGTCCTGCTCTCGGTTCTCTACGTGTTGAGTGAGCTACATGCTAACAGGGCTAACACGACTCCTCTGCTCcgcttctcctcctcctcacacactaataaaaataatgataacagaCCGCAGACCAAACCACCGCACACCGCCGACCGGAGCCGCGGAGACGGCAGAAATGCTGCACCGAAAGCAGATTCAGCTGGAAGACGGGAGGAGGCGATTCATCTGGCAGTGGTGGCTTGTGGGACGAGGCAGGATGAGGCTGTCAGCCTGCTCAAATCTGCGGTGATACTGAGCAACAGAGCAATGAGatttcatttatttgctgaGGATCAGCTGCACAGCAGTATAAAAGCAGTTCTGGACTCTTGGCCCGCTTCTGTTAGGCAGAAGTTCAGCTACACTGTGTATCCAGTCTCCTTCCCCAGCCAGGACCAGAGCGAGTGGAGTAAGCTTTTTAAGCCCTGTGCTTCACAGAGACTTTTCCTGCCTATGATTTTAAAGGAGGTGGACTCGCTGCTGTATGTGGACACAGATGTTCTTTTCTTGCGGCCCGTGGAGCTGCTGTGGGACCTTTTCATGCAGTTTAACTCGAGTCAGCTGGCAGCAATGGCACCAGAGCACGAGGAGCCGCGCATTGCCTGGTACAACCGCTTTGCCCGCCATCCATATTATGGACAAACAGGCATCAACTCTGGTGTGATGTTGATGAACTTGACCCGAATGAGACGGGCCCATTTTAAGAATGACATGACTACTGTAGGTCTGCGCTGGGAGGAGCTTCTGGTGCCACTGCTCAATAAATATAAGCTAAACATCACCTGGGGAGATCAAGACCTCATCAACATCATCTTTCATCATAATCCTGagaagctgctggtgtttccaTGCCACTGGAACTACCGTCCTGATCACTGCATCTACGGCAGTAACTGCATCCATGCAGAGCAGGAAGGGGTGTTTGTTCTTCATGGAAATAGAGGAGTGTtccacactgagaaacagcCTGCATTCAAGGCTGTGTATGATTCTGTtagagagtacTCTTTTGGAGAGGATTTGGTAACTTCGTTTTGGCTGCCCTTGGAAGACAAGCTGAATGAGACCACACACACTTATTGCGGAAAAATCAGTCATCTCTTTACCAGAGCACTGAACCAATCCGCGGGATTCACACTGAGAACCACTTTACTTAATGACTGAGGTGTTCTTTGGAAACAAAGCTTAATGTACTGTACCATCTTTCCACTGGATAAGAATGTTAAAGCTGGAATGTGcctttgtgatgtaaataataattaagacATTGCTAACAGGCTCTAGACTGTGTTCAGGCCTGCAACATTATGGACACTCTAACCTTGTGAGACAGACGGTCAGAATACAGTGATGTGCAGTAATTTCAATACTACAGCTGCATCAGCAATTATTTGGTTGAAATGATGGACTTTTTGCTGCTTGTTGAACGTAAAGCAGGTGTACAGACTGCTTTAATGAAAATCTGCtgtgctgtatttgtttttgtgtttactgGGGAAGCTGAACTTCATTGTCTTCCAGTGGGATATGTGGGGGACCGTTTAGGTGGCCTTATTGAAGCAGGAATGGCAGCTAAACAGCTCAGGGATTTGAATATATTTGTGAATATTTTGTGCTAAAGGatgtaaataaaacttttgtatatacata

Function

NR:

description
PREDICTED: glucoside xylosyltransferase 1-like

GO:

id name namespace
GO:0016266 O-glycan processing biological_process
GO:0016021 integral component of membrane cellular_component
GO:0035252 UDP-xylosyltransferase activity molecular_function

KEGG:

id description
K13676 GXYLT; UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245025.3 True 1894 mRNA 0.48 7 6782248 6793867

Neighbor

gene id symbol gene type direction distance location
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding upstream 10887 6757554 ~ 6771361 (+)
zcrb1 zcrb1 coding upstream 78354 6695590 ~ 6703894 (+)
LOC103021937 LOC108439409 coding upstream 149443 6601383 ~ 6632805 (+)
pus7l NA coding upstream 340674 6428006 ~ 6441574 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding upstream 355971 6409917 ~ 6426277 (+)
foxp2 foxp2 coding downstream 159149 6953016 ~ 7094083 (+)
mdfic mdfic coding downstream 345984 7139851 ~ 7170640 (+)
arl1 arl1 coding downstream 755218 7549085 ~ 7553250 (+)
slc5a8 slc5a8 coding downstream 810034 7603901 ~ 7612947 (+)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 coding downstream 826947 7620814 ~ 7631378 (+)
G62431 NA non-coding upstream 47420 6734481 ~ 6734828 (+)
G62420 NA non-coding upstream 108790 6665395 ~ 6673458 (+)
G62400 NA non-coding upstream 250425 6430591 ~ 6531823 (+)
G62386 NA non-coding upstream 385695 6396286 ~ 6396553 (+)
G62367 NA non-coding upstream 417622 6364337 ~ 6364626 (+)
G62425 NA non-coding downstream 4473 6798340 ~ 6830009 (+)
LOC111192941 NA non-coding downstream 130311 6924178 ~ 6942785 (+)
G62471 NA non-coding downstream 308413 7102280 ~ 7102659 (+)
G62576 NA non-coding downstream 400909 7194776 ~ 7194982 (+)
G62579 NA non-coding downstream 424616 7218483 ~ 7218703 (+)
c7h12orf75 NA other upstream 788254 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 814513 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 1016463 5740555 ~ 5765785 (+)
G61575 NA other upstream 3478250 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4846749 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 57363 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1607973 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 1732351 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 2637632 9431499 ~ 9440564 (+)
G63051 NA other downstream 2852712 9646579 ~ 9650087 (+)

Expression


Co-expression Network