LOC103021606 (yaf2,LOC108439407,LOC102797593,LOC105018284)


Basic Information

Item Value
gene id LOC103021606
gene name yaf2,LOC108439407,LOC102797593,LOC105018284
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6757554 ~ 6771361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245027.3
ATGCTATTTGGAGAAACTACATGTACATAGTTGAATCTAAATAGGATTAAGCATTCAATGCAGAAAACctcagtttaaaataatttaataaattatttgaatgtcttgtattttttttatgaagcttTGATTTGACATACACTACATTTTAAGATTTACCAGACACATTAGGTGTATTTGCACAAAGTGTCGGATCCTGAATCGCAGCCTGAATTTTACtcggtatcggatcggaagGGAAACCGGTGTTATTGAGCATCACTTGTTCTTAGATTCGGTGTTTTGGCCCCTGACGCTTTGCTGAACCCTGCGACCCGCTGGTCGCTGAGACGGCCGCTGATTGGCCCGTCCCGGTCACGTGACCATCGTCCTCGTAGCTGGACTTTTCTCCGGCAGCGGGCTGCGGGCGCTCCGCCGTCTCACAGCAAACAAACACGAACCGCCGAGCCGCCGGAACACGAGCCACGCGGACCGGAGCTCAGCGAGCATGGGAGACAAGAGGAGCCCAACGAGGCCGAAACGACAGCCCAAGCCCTCGTCCGACGACGCCTACTGGGACTGCAGCGTGTGCACGTTCAGGAACAGCGCCGAGGCGTTCAAATGCATGATGTGCGATGTCCGCAAGGGCACCTCGACACGGAAGCCTCGTCCTGTCTCCCAGCTGGTAGCACAGCAAGTAACGCAGCAGTTTGCTTCGCCCACTCACCccaagaaagagaagaaggagaagacggataaggagaaaaatgagaaggaGCCCACACTGAAAAGGAATAGCCACAAGAAAATGAGGCCCAGGTTAAAAAACGTGGACAGGAGCAGTGCTCAGCACCTGGAGGTGACAGTAGGAGACCTGACTGTTATCATCACAGACTTTAAAGAGAAAACCAAGCCCTCGTCCAGCTCCTCTTCGAGCGCCACCTCGGCAGATCACCACAACCAGAGCGGCTCCAGCTCCGACAACACAGAGAGAGGGTTCTCCCGCTCCTCCTCGCCCCGAGGGGAGGCTTCTTCAGTCAACGGAGAGGCCCACTGAGAGCTGACCTTGTAGCAAACCCCCTATCCCCTCGCACCCCAGTGTTCTTTTTGCACCAGAACATGCACAATTGTGTGTGCACTTGTGCGTGTAGGCCAAGACTTGATACTTGAGACTAGACCCAGGCACTATTGACCAACCACCATTGCCACATCTAGAGGATTTAAGCCCCAGATCTTCCAGGACTCAATGCTCCTGCTTTGTTATTACATGGAGAATTTGTTACAACACCTATTAAGTCAGCTGGAGTGAACTTCTGACTTCTTTTTACAGGACTTCTGATGTTAAAAATTAATGACTTGTAACAAGTAAGTGATTTACTGACCATACAGCGGCAATTTGACATGATAGTATTGTGCATCGAACCAGTGTTACTGTTGATTTGCATTTAAAGACTACATCTACTCTTGTCTTATGTAATGTTATGGCATGGTTTgggttccttttttcttttctttttttataggaGCGTTGAGTGCAACACAGAGAAGCAGATGGACTGCCTTTCTGTAATTGTACAGTCTTCTATGGATAACTAACTGTGGTAGCAACcagagtgtttgttttttaacgTTTTATTGTTTCCTCCCTCACTTGTTCATTGCACCTGCTGGCACTTGGTGTAGTTTATAAGGGgggggaaatgtagtttttgatgtttgtttgttttaaggtCTGATTTTGAGAGAATTGCATCAgcattttagtttagccttccACTCAGATGTACTGTAATGTGTTAGAgcgtcttggttcctctcaccaagatagctaaataaaacaaaatgtttaatagtaaaaacaaaatggaaaatgtatttgtaaGATGTTGACTTTGCTTTATTCCCTCCTTTTCTAATGAGCAGCggtacataaatatattacagtatagcAATCGTCTCCTAATAAAATCTAATATTCAGACTTAA

Function

symbol description
yaf2 Predicted to enable DNA binding activity and transcription coregulator activity. Acts upstream of or within forebrain development and negative regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in forebrain; head; and midbrain. Orthologous to human YAF2 (YY1 associated factor 2).

NR:

description
YY1-associated factor 2

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0030900 forebrain development biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11468 YAF2; YY1-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245027.3 True 1965 mRNA 0.46 4 6757554 6771361

Neighbor

gene id symbol gene type direction distance location
zcrb1 zcrb1 coding upstream 53660 6695590 ~ 6703894 (+)
LOC103021937 LOC108439409 coding upstream 124749 6601383 ~ 6632805 (+)
pus7l NA coding upstream 315980 6428006 ~ 6441574 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding upstream 331277 6409917 ~ 6426277 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding upstream 423214 6216811 ~ 6334340 (+)
LOC103047680 LOC108439417 coding downstream 10887 6782248 ~ 6793867 (+)
foxp2 foxp2 coding downstream 181655 6953016 ~ 7094083 (+)
mdfic mdfic coding downstream 368490 7139851 ~ 7170640 (+)
arl1 arl1 coding downstream 777724 7549085 ~ 7553250 (+)
slc5a8 slc5a8 coding downstream 832540 7603901 ~ 7612947 (+)
G62431 NA non-coding upstream 22726 6734481 ~ 6734828 (+)
G62420 NA non-coding upstream 84096 6665395 ~ 6673458 (+)
G62400 NA non-coding upstream 225731 6430591 ~ 6531823 (+)
G62386 NA non-coding upstream 361001 6396286 ~ 6396553 (+)
G62367 NA non-coding upstream 392928 6364337 ~ 6364626 (+)
G62425 NA non-coding downstream 26979 6798340 ~ 6830009 (+)
LOC111192941 NA non-coding downstream 152817 6924178 ~ 6942785 (+)
G62471 NA non-coding downstream 330919 7102280 ~ 7102659 (+)
G62576 NA non-coding downstream 423415 7194776 ~ 7194982 (+)
G62579 NA non-coding downstream 447122 7218483 ~ 7218703 (+)
c7h12orf75 NA other upstream 763560 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 789819 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 991769 5740555 ~ 5765785 (+)
G61575 NA other upstream 3453556 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4822055 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 79869 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1630479 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 1754857 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 2660138 9431499 ~ 9440564 (+)
G63051 NA other downstream 2875218 9646579 ~ 9650087 (+)

Expression


Co-expression Network