LOC103021937 (LOC108439409)


Basic Information

Item Value
gene id LOC103021937
gene name LOC108439409
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6601383 ~ 6632805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245028.3
acacacacttacaagaGAAGCAAGAGAGGGGAAAAAGCACATTCTGCTAACTGTTCATTTTCAAACATTTCACTGCTGAACATGGAGGATCCTGATTGCTGATGATAAGTGATTGTTCCAGCTGGATTTAGAAAAGCGTTGATGTCTTCAGAGAGGAATTGAACTTTAAGTTGTGAGCATGCTGTGTAGGATCTGGGCCTGATTTATCATCTCTTGCTGTAGAAACAAATGACTGGATTTACTAAGATGCGTTACACTGGGTGCCCACATCTGATGAGTCTGGAGTCAGCATCGGCGTTCCAGGCTTTTTCTAGGACGCGGGAAATGGAACCACGAGGAACTAAGATAGCACTGGGTTTCCAGAGGAGCTCCACTTCTGATGATGATTCTGGCTGCGCTCTGGAGGAATACACATGGGTGCCTCCTGGTCTGAGACCTGACCAGGTCCAGCTCTACTTTTCCAGCCTGCCAGAGGAGAAGGTGCCCTATGTGAACAGCCCTGGAGAGAAACacaggatcagacagctcttGTATCAGCTGCCTCCTCATGACAATGAGATCCGATACTGCCAGTCACTCaatgaggaggagaggagggagcTGCACATGTTCAgcatacagagaaagaaagaggctCTGGGCAGAGGAACTCCAAGACTTTTACCTAGAACCATGCAGCAGCACGTCATATGTGAACATTGTAAAGAAAGCATCAGTGCTGGGGAAATGGCAGTGTTTGCCTCGAGGGCTGGCTCCGGACCTTGCTGGCACCCAGCGTGCTTCAGCTGCTCTACCTGCCATGAGCTTCTGGTTGACCTTATCTACTTTTACCACACCGGCAAGATCTACTGCGGGAGGCATCATGCTGAGCTGCTGAAGCCGAGATGTTCAGCTTGTGATGAGATCATTTTTGCAGACGAGTGCACAGAGGCGGAGGGTCGTCACTGGCACATGAATCACTTCAGCTGTTTCGAGTGCGAGACGGTTTTGGGAGGACAGAGGTATATAATGAAGGATGGCCGTGCCTTCTGCTGCGGCTGCTTCGAGTCCCTTTATGCAGAGTATTGCGAGGCCTGTGGGGAAAACATAGGTGTGGACCACGCTCAGATGACGTACGAGGGTGTGCACTGGCACGCCACCGACAAGTGCTTCTGCTGTGCCCAGTGCAAGATCTCCCTCCTCGGCTGCCCTTTCCTTCCAAAAGAAGGACGGATCTACTGCTCCAAGGCCTGCAGCCTCGGCGAAGACACCCACGCCTCCGACTCATCAGATTCCGCCTTCCAGTCTGCCAGGTCACGCGAGTCCCAGCGCAGCGTGAGAATGGGCAAGAGCAGCCGACCTACAGGCTGCTACAATCAGGTGCTGCCATATTTACCCTCACCAGAACACAGAAGCCCAAACCTTTGTGAGGACAGCTCTGAGACCGTGTGTCATCAACTAGAGCAGCTCAGTTTTGCAGAGGATCATTTTTGGAGAGGGCGCGAGGAGCAGGAACCCGCAGAAGACCCTCTGGAAGAGTGGGCCGAGCATGAGGACTATATGACGCAACTGCTGCTGAAGTTTGGTGACCGAGGAGTCTTTCAGCATACAGAGGACACCAGGCAGGGGGAGCAAAGGGTGCTGACAGAGTTTGACCCCAGCAGGGTCAAACAAGACGTAAAGACTGGCAGCCATAATCTGGCCAGTAAAAAGCATCATACAGATTTATACTGGACCCAGTCTCAGGACGGTCTCGGAGACTCTGCCTACGGGAGTCACCCAGGTCCAGCCAGCGCCAGGAAGATCCAGGAACTTGACCTGGACCAGGGAGCAGGGGCTGGATTCTGGTCGAAGCCCAGGCAGTGGTACGATGACTCTTTGGAGTGCATTACAGATGAGCTGCGGAAAGCTGAGCAGAACATGGGCGATTCCATGGACTCTCTAGCCCTCTCAAATATTACAGgaGCCTCAGTggacagagagagcaaagacaGACAGGCCAACTATTCCTTCCAAAGCATCAATCACCAGGAAGAAGAGGAGTGTGATAAAATGAGCAATATGGGCACTTTAAATTCCTCCATGCTCCACAGGAGTGCCAACTCCCTAAAGAGCCTCAACTCCTTGCTGGACAACGAGGAGATAGTAGGACAAGATGAGATCGAGCAAGAGGAAGAAGATGAGCTGGCAGCCTGTCTCGCAGAGGAGCCACCTTCTCCTTTGCATCTCCCGGTTTTGAGAAGGACCAAGTCCCAGTCTCAGCCTCAGTCGCGATCTCAGCAGGTAAAGTTCTCAGAGGACGTCGCAGATAACGGATACTACGGGGAACTGGCGATGCAGCCTCCTCCAACCAGCGAGAGGACGCGCAGACGTACCTACCACATGGAGGATTCGCAAAGACGCATCACCAGCCATCACCGACACAACCACAGACGCCGACCAGGACGTAAAACCTGCTCCGAAAACGCCCTTCACCTGTCAGTCAAAGAGCGAACAGAACTGCACTACGAGACTCAGATAACTCCCAGCATCCCAGAGGCCAAGAAAGGAATTCTCCTCAACTCTCCCGGACACAGGCCTTACCACCAGACCTCATCAGACTACGCACTACAGAGCATGGCCCAAATGGAGCGCGCTCACTGCTTATACGACGAAGATGAAGATGACTGGTGTTCCACCTGCTCATCCTCGTCCTCAGAGTCTGAGGAAGAGGGATTCTTCCTAGGCAAACCCATTCCCAAACCCAGATCCCAGAGTTTTCATTATTACACAGAAGACCGACAGACTCGCGTTACAGCGTTATCTCCTGTATACGGCTCACGGACCAAACCTAAAAAACGAGGCCACAAGGGCAAGAACTGCATCATCTCATAAATACATCAGGATATTATTCACAGGCCCTTAAACGAACTAttttactcctgttactgtgtTCACGTGActattatttatctatataaaCAGGTACAGGTCatattgttctctctctctctctccaaagtATGGTGCCACTACAGAcgatttctattatttttaaacacagttaaaaaaaaaaaaaaaa
>XM_007245029.2
CTGTGTGTTTTTAACGGCCGTGCACGCGCAGCGTCTTTTAACTGTGGAGCCCGAGAGCAGCGCAGCAGCGCTTTATTAactaactactactacagcTGGGCTTCAGACCCTCACAGACCCTCTCACTGTctccacacacacttttacaccatGGCGGGCTGTTTATCTGCGTTTTCTGGATCGTGACCGCTCTGCTACAGAATTGGACGTGTTTCTCTGGTTCTTTGGACGGCTGGACTCAATCAAATGACACTTGCGGTGATTATTTCTTAGCGTCTGAGGAAAATCTGCTCTGCGAGAGGAGTTCACACTTCTGAACTCAGCTAACTGCCCACATCTGATGAGTCTGGAGTCAGCATCGGCGTTCCAGGCTTTTTCTAGGACGCGGGAAATGGAACCACGAGGAACTAAGATAGCACTGGGTTTCCAGAGGAGCTCCACTTCTGATGATGATTCTGGCTGCGCTCTGGAGGAATACACATGGGTGCCTCCTGGTCTGAGACCTGACCAGGTCCAGCTCTACTTTTCCAGCCTGCCAGAGGAGAAGGTGCCCTATGTGAACAGCCCTGGAGAGAAACacaggatcagacagctcttGTATCAGCTGCCTCCTCATGACAATGAGATCCGATACTGCCAGTCACTCaatgaggaggagaggagggagcTGCACATGTTCAgcatacagagaaagaaagaggctCTGGGCAGAGGAACTCCAAGACTTTTACCTAGAACCATGCAGCAGCACGTCATATGTGAACATTGTAAAGAAAGCATCAGTGCTGGGGAAATGGCAGTGTTTGCCTCGAGGGCTGGCTCCGGACCTTGCTGGCACCCAGCGTGCTTCAGCTGCTCTACCTGCCATGAGCTTCTGGTTGACCTTATCTACTTTTACCACACCGGCAAGATCTACTGCGGGAGGCATCATGCTGAGCTGCTGAAGCCGAGATGTTCAGCTTGTGATGAGATCATTTTTGCAGACGAGTGCACAGAGGCGGAGGGTCGTCACTGGCACATGAATCACTTCAGCTGTTTCGAGTGCGAGACGGTTTTGGGAGGACAGAGGTATATAATGAAGGATGGCCGTGCCTTCTGCTGCGGCTGCTTCGAGTCCCTTTATGCAGAGTATTGCGAGGCCTGTGGGGAAAACATAGGTGTGGACCACGCTCAGATGACGTACGAGGGTGTGCACTGGCACGCCACCGACAAGTGCTTCTGCTGTGCCCAGTGCAAGATCTCCCTCCTCGGCTGCCCTTTCCTTCCAAAAGAAGGACGGATCTACTGCTCCAAGGCCTGCAGCCTCGGCGAAGACACCCACGCCTCCGACTCATCAGATTCCGCCTTCCAGTCTGCCAGGTCACGCGAGTCCCAGCGCAGCGTGAGAATGGGCAAGAGCAGCCGACCTACAGGCTGCTACAATCAGGTGCTGCCATATTTACCCTCACCAGAACACAGAAGCCCAAACCTTTGTGAGGACAGCTCTGAGACCGTGTGTCATCAACTAGAGCAGCTCAGTTTTGCAGAGGATCATTTTTGGAGAGGGCGCGAGGAGCAGGAACCCGCAGAAGACCCTCTGGAAGAGTGGGCCGAGCATGAGGACTATATGACGCAACTGCTGCTGAAGTTTGGTGACCGAGGAGTCTTTCAGCATACAGAGGACACCAGGCAGGGGGAGCAAAGGGTGCTGACAGAGTTTGACCCCAGCAGGGTCAAACAAGACGTAAAGACTGGCAGCCATAATCTGGCCAGTAAAAAGCATCATACAGATTTATACTGGACCCAGTCTCAGGACGGTCTCGGAGACTCTGCCTACGGGAGTCACCCAGGTCCAGCCAGCGCCAGGAAGATCCAGGAACTTGACCTGGACCAGGGAGCAGGGGCTGGATTCTGGTCGAAGCCCAGGCAGTGGTACGATGACTCTTTGGAGTGCATTACAGATGAGCTGCGGAAAGCTGAGCAGAACATGGGCGATTCCATGGACTCTCTAGCCCTCTCAAATATTACAGgaGCCTCAGTggacagagagagcaaagacaGACAGGCCAACTATTCCTTCCAAAGCATCAATCACCAGGAAGAAGAGGAGTGTGATAAAATGAGCAATATGGGCACTTTAAATTCCTCCATGCTCCACAGGAGTGCCAACTCCCTAAAGAGCCTCAACTCCTTGCTGGACAACGAGGAGATAGTAGGACAAGATGAGATCGAGCAAGAGGAAGAAGATGAGCTGGCAGCCTGTCTCGCAGAGGAGCCACCTTCTCCTTTGCATCTCCCGGTTTTGAGAAGGACCAAGTCCCAGTCTCAGCCTCAGTCGCGATCTCAGCAGGTAAAGTTCTCAGAGGACGTCGCAGATAACGGATACTACGGGGAACTGGCGATGCAGCCTCCTCCAACCAGCGAGAGGACGCGCAGACGTACCTACCACATGGAGGATTCGCAAAGACGCATCACCAGCCATCACCGACACAACCACAGACGCCGACCAGGACGTAAAACCTGCTCCGAAAACGCCCTTCACCTGTCAGTCAAAGAGCGAACAGAACTGCACTACGAGACTCAGATAACTCCCAGCATCCCAGAGGCCAAGAAAGGAATTCTCCTCAACTCTCCCGGACACAGGCCTTACCACCAGACCTCATCAGACTACGCACTACAGAGCATGGCCCAAATGGAGCGCGCTCACTGCTTATACGACGAAGATGAAGATGACTGGTGTTCCACCTGCTCATCCTCGTCCTCAGAGTCTGAGGAAGAGGGATTCTTCCTAGGCAAACCCATTCCCAAACCCAGATCCCAGAGTTTTCATTATTACACAGAAGACCGACAGACTCGCGTTACAGCGTTATCTCCTGTATACGGCTCACGGACCAAACCTAAAAAACGAGGCCACAAGGGCAAGAACTGCATCATCTCATAAATACATCAGGATATTATTCACAGGCCCTTAAACGAACTAttttactcctgttactgtgtTCACGTGActattatttatctatataaaCAGGTACAGGTCatattgttctctctctctctctccaaagtATGGTGCCACTACAGAcgatttctattatttttaaacacagttaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: prickle-like protein 1 isoform X1

GO:

id name namespace
GO:0001764 neuron migration biological_process
GO:0021934 hindbrain tangential cell migration biological_process
GO:0021754 facial nucleus development biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04511 PRICKLE; prickle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245028.3 False 3040 mRNA 0.51 8 6618345 6632805
XM_007245029.2 True 3107 mRNA 0.52 8 6601383 6632805

Neighbor

gene id symbol gene type direction distance location
pus7l NA coding upstream 159809 6428006 ~ 6441574 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding upstream 175106 6409917 ~ 6426277 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding upstream 267043 6216811 ~ 6334340 (+)
LOC111192904 NA coding upstream 586269 6012846 ~ 6015114 (+)
LOC107197570 LOC108442310 coding upstream 1178079 5421768 ~ 5423304 (+)
zcrb1 zcrb1 coding downstream 62785 6695590 ~ 6703894 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding downstream 124749 6757554 ~ 6771361 (+)
LOC103047680 LOC108439417 coding downstream 149443 6782248 ~ 6793867 (+)
foxp2 foxp2 coding downstream 320211 6953016 ~ 7094083 (+)
mdfic mdfic coding downstream 507046 7139851 ~ 7170640 (+)
G62400 NA non-coding upstream 69560 6430591 ~ 6531823 (+)
G62386 NA non-coding upstream 204830 6396286 ~ 6396553 (+)
G62367 NA non-coding upstream 236757 6364337 ~ 6364626 (+)
G62311 NA non-coding upstream 415253 6182851 ~ 6186130 (+)
G62309 NA non-coding upstream 423878 6177224 ~ 6177505 (+)
G62420 NA non-coding downstream 32590 6665395 ~ 6673458 (+)
G62431 NA non-coding downstream 101676 6734481 ~ 6734828 (+)
G62425 NA non-coding downstream 165535 6798340 ~ 6830009 (+)
LOC111192941 NA non-coding downstream 291373 6924178 ~ 6942785 (+)
G62471 NA non-coding downstream 469475 7102280 ~ 7102659 (+)
c7h12orf75 NA other upstream 607389 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 633648 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 835598 5740555 ~ 5765785 (+)
G61575 NA other upstream 3297385 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4665884 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 218425 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1769035 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 1893413 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 2798694 9431499 ~ 9440564 (+)
G63051 NA other downstream 3013774 9646579 ~ 9650087 (+)

Expression


Co-expression Network