pus7l


Basic Information

Item Value
gene id pus7l
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6428006 ~ 6441574 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245033.3
gGTATCAGTCTCTCTATGGCTCTGCTTTCTCTGTGCATGGGCTGCTTTAGGTTACTGTAGCTTTAAGAGAGGCGAAGCTCCTCCTCCAGGCTGCACACGTGGGGCGGAAATTCCCCGTATGTTGTTTAGAGCATGTGGGtgagtgtacagtagtgtattgATACATTTCTGATTTCTGTTCAAACAATACTCAGAAAAGACGTTCAGTGCACACTGTGTGCGCCTGAACTACACAGTGCCTTTATATATGTTCTAATACTGTGTATATAATGAGAAAATCGCCTATTTCTACTGTTAAACTGAAATTTAGGGCAGGTGAAAGCTGTGCCTCTGCATTGCTGGTTATCTAGGTTAGGTTAGATTAGTTGTTTGAATGGAAATGGAGAGTCAGTGCCTCTCTCCCTGCTTCGTGTCTGACCATGAGGGCTTCAGTGGCAGCATCAAGAACTCCACCAGAGACTTTATAGTCATTGAGATAGACCTCCATGGACAACGTGTGAATTCACTAACGTTACCCCAGCAAACCCCAGAGCTGCCTGCTGCTGAAGTCCAGCAGTCCTCCAGCAAAGaagaagagaataagagagcagataacaggactgagaaagCAGTCCTGCAGGAGGTCACTGCTGAACTGTCCAGTTTAAATGGGGAAGGAGATCTAACTGAGGGGTTTGATCTAAATGTATTGCTGGGCTCTTCTGTGTATGAAGCACTGGAGAACTTCTCCAGCAAACTTGTAGGATGCAGAGAGGAGCAGAAAATGACTGAGGGCTTAGAAATGAGCCTCGGTACCTTCCCTGATAAACACCAGCGAGCCAGTGTACACAGAGCAGTGAGACACAGCTACCCACATCTCATGACCATCACCAACCAGGCAGAGATCCGGGTCAGAGAGGACCCAGACTTCAGAGAGCTGTCGAAGCTGGTCCctgaggaggaggcggaggacTTCTTCCGGTTTATAGATGCTAAAGTCCCCGGATCTGCCTTCACCTTCTCACCTGATGACAGCAAGAGTCACCGCACATCTGTGCACCACTTCCTGAGCAGGAAGTTTGGGAAGCTGGTGGAGACCAAGAGCTTCTCAGAGCAGGACAGAACTGCTATCACagtgagactgagagagagaggaaaacagGGCAAGAAGAGGACAGCTGCAGACTGTGAAGAGCAGGTGGAGACCTACACAGGTTTCAcactaaagaaagaaaacttgGAGACTCTTGAGGCAATCAGCTACATGTCCGCTGTGCTTGGAGTTCTCCCATCAGATTTCAGCTACGCTGGCATTAAAGATAAACGGGCCATCACCTATCAGTCCATGGTTGTGAAGAAGATCTCCACAAAGCGGTTGCAGGAGAAGCTCTCAGAGTTTGAGAGGAGAGGAATGCAGGTGTCTAATATTCATTCAGTGTCCGAACCCCTTCGACTCGGGAGGCTAAAGGGTAACCACTTTGACCTCGTCATCCGGGACCTGAAGAATTATGAGAAGTGTAGTTCACTAGAGCTGGAAGAGCTTGTGAAGAAGGCAGTGGAGAATGTGAAGACTCATGGTTTTGTGAATTATTATGGGCCTCAGAGATTTGGAAATAGCCAGAGTGTTCAAGCTGACAGAGTGGGACTTGCACTTCTGAAAGAAGACATGGTTACTGCTCTGAAGTTGTTTCTGAGCCCTGAAGAAGGTGATGACCTCCAAAATAAAGCAAAACGGCATTTCCTTCATACGGGTAACGCAAAAGAGAGCCTAGCTCTAATGCCAGCGTATAAAGCTAGAGAGAGGCTCATGCTGCGGGCACTGCACCGTTATGGCAGCGACCAGGAGGGTTGTGGGCGAGCCTGGATCAGTCTGCCCCATGGCATGAGGGTCTTCTACCTCCATGCCTACTGCAGCCGGCTGTGGAACGAGGCTGCCTCCTACAGGCTGAACACTCTGCCACACAGGCCTGTACAGGGAGACCTGGTGTGGACCAGTTCCAGACAAGATGAACCAGCAACTGAAGAATCTGATACTGCTCAGGTCCATATTATCACCTCTGCTGAAGAAAAAGACAATGTCTTCTCACTAAAACAGGTGGTCCTCCCCATGCCCGGCAACACTGTAAAATATCCAGAGAATGTACTTGGTAAATGGTATCAGGACCGGCTATCACAGGACGGTCTGGGTTCCTGCAGATTCAGAATCACCTCACTCAAACTCAACGTGCCTGGCTGCTACCGGCCCTTACTGGCTTATCCTCATAACATCACCTACAGCCTACAGACTACTGAAGAAGAATCATTCACAGAGCCGTCACCCCCTCCCTCCACAACTGCCTTAAAACTGTCTTTTGATCTTGATTCTTCCTGCTACGCCACAGTCTGTCTCAGGGAAATTATGAAGTGTGATCCTTAGGAATGTAGAATTTGTAAATGTCAGTGGTTTCATTTTGCTTTAATTTCATGTCATTTCATCAAGTGGCCACTAGATGGGATGGTTGGATTACATGAACTTGATTCAAAAGTAATacaaaggcccaatcccatttcaccccttggccttaccacttacccctaactaaccccttcttttcgagtgtaagCCTTTAGAATACAAGAAGAAAGGGGTGGAAATGGATGACCCTTTAACCACCGACATGACATCAGGAGTGCTAGAGTTCaataacctagctgctggttaactagttaacgtTA

Function

NR:

description
PREDICTED: pseudouridylate synthase 7 homolog-like protein

GO:

id name namespace
GO:0009451 RNA modification biological_process
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K06176 truD, PUS7; tRNA pseudouridine13 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245033.3 True 2694 mRNA 0.48 8 6428006 6441574

Neighbor

gene id symbol gene type direction distance location
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding upstream 1729 6409917 ~ 6426277 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding upstream 93666 6216811 ~ 6334340 (+)
LOC111192904 NA coding upstream 412892 6012846 ~ 6015114 (+)
LOC107197570 LOC108442310 coding upstream 1004702 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 1166455 5251133 ~ 5261551 (+)
LOC103021937 LOC108439409 coding downstream 159809 6601383 ~ 6632805 (+)
zcrb1 zcrb1 coding downstream 254016 6695590 ~ 6703894 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding downstream 315980 6757554 ~ 6771361 (+)
LOC103047680 LOC108439417 coding downstream 340674 6782248 ~ 6793867 (+)
foxp2 foxp2 coding downstream 511442 6953016 ~ 7094083 (+)
G62386 NA non-coding upstream 31453 6396286 ~ 6396553 (+)
G62367 NA non-coding upstream 63380 6364337 ~ 6364626 (+)
G62311 NA non-coding upstream 241876 6182851 ~ 6186130 (+)
G62309 NA non-coding upstream 250501 6177224 ~ 6177505 (+)
G62287 NA non-coding upstream 255838 6171213 ~ 6172168 (+)
G62420 NA non-coding downstream 223821 6665395 ~ 6673458 (+)
G62431 NA non-coding downstream 292907 6734481 ~ 6734828 (+)
G62425 NA non-coding downstream 356766 6798340 ~ 6830009 (+)
LOC111192941 NA non-coding downstream 482604 6924178 ~ 6942785 (+)
G62471 NA non-coding downstream 660706 7102280 ~ 7102659 (+)
c7h12orf75 NA other upstream 434012 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 460271 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 662221 5740555 ~ 5765785 (+)
G61575 NA other upstream 3124008 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4492507 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 409656 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1960266 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 2084644 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 2989925 9431499 ~ 9440564 (+)
G63051 NA other downstream 3205005 9646579 ~ 9650087 (+)

Expression


Co-expression Network