LOC103025989 (LOC108432518)


Basic Information

Item Value
gene id LOC103025989
gene name LOC108432518
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 30377181 ~ 30406547 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245042.3
tttactgatgtAAAAGGAGGGAAATAAAATGGTTAGACTCTCCATAAACTGCTCTGGTAAAGCAGGAGatttgttttggacccgtggttctcTCTTTTGGTCATCTCATTGGCTGTAGGTAGCTGCTGCTCCTGACTTATAGTcgccgactgagtcagatattaaacatgttgaatatttgcCATATCAGTCGGTGACAGGTCAGCAAGCATCTTTCAGTTTACACTACACAACAGTGCGAGCACTGAGTGATTCCCGATTTGCTCCGAGCCAAGTTTTTGTTGCCGATCAATGAAAAACTGGCCCaaaatcatgtagtgtgaacctggcattaatgtacaatgtaggaaaaaatacattaacattaaataagaaggtgTATACAAACATTTAACTGGTAATATATGGTGCAATATACTATTTAGAGGAAGACCAGGTTGTTCAAGCTCAAGTACAAGGGTGATCTTGAGCTATCCATTCCTGGAAGTAAAGTTGGTGGAGAAAGTGGCTGTACACAACCAATAGTATTAGCTCTTTAGCCCTCGTTCTCACTTTAACCTGTCTATCAGCTGCCAGAGAGTTATCTCGTCCTGGAAATGCCCTCTAAGCCCCATGTCTGCTCTACACGGGAGCTCTTAATACTCCAGCTAAACACTTTTCACTTGCGCtccctctctgcctctctttctctctcacactctctctctctctctttggccAGTTTGGCAGGCAGAGGAAATCCGTCACATTTGTTGTTGTGGCTCAGCCGCCATCCCAAGCTGCGCAGAGTCCAGACATCTAACCCCAAAAAGCAGAGACATGAGGCCAGAGAGGAGGGAGGCCGCTGCAGGGACGAGCTGCCTGATGGCCTGAGTTACAAACAAATAGCCACACGGAGAAGCTGGGACACGGAGCAAAGCAAAGACAAGGGCTTCCACCATGCTGATACCGTGGAGGACACTGTTCTATCAGATGGTGCTGAACGTGTCATATGACATCGTAAAAGCCAGTTTATGCCTTGGTGGTCATGATATTTTAGCGGCAATTAAAGAAAATAGTCCCATGGGGGAATTCATTGCAAACATCACCATTGCTGAAGAACCAAGGGTCAATAGTATTCGCCTGTGCCTCACCGGAGAGAATGCTGGCTGGTTTTACCTTGAGGGAAGAACAATTAGATTAAACACGTCCTTTTCAAGAGGGCTCGACCGAGAGGTCCAGGGGTCAATTTTGCTGGCCTCCTTAACATGTTATGAGGAGGACACAAAACAGAATGAATACAGAGTGATGGTGGAGATCTTGAATGAAAATGACAACCTGCCATATTTTCTTGAAAAGACTATTCAACCAAGATCTATTAGTGAGTTGACAGCAGTGAACTCTGTGGCGTTTTCAGTTAAAGCCAAAGATGCAGATGGCGACATTATCACATACATCATTGATAAGTTGTCTCCTGATGCCAGCTATTTCAGAATTGACCTTCCCAACAGCGGAATTATTATCTTGAACAAACCACTAGACTTTGAAACTAAAACCGAGCTCCAGGTGAACATATGTGCTGTGGAAATGAACACCATTGAGAAGTACAACACGActgcaacaataaaaataagcgTGCTGGATGGAGATGATCAGTATCCTCAGTTCCTGCCCTGTTCTCCAGTTTCAGAACACACCATATGCACCAACCCGCTATACATCGCTAACATCTCAGAGGAAGCAGAGAACACCATCTTGCATTTCTCACCTGGTCCCATTCATGCTGAGGATGGAGACAAAGACATACTGGCCCCTGTGACCTACGCTATCCTATCAGGTGACGACAATGGCAGATTTACTATCAACCATGAAACTGGAGAAATTAGCCTGAGACGGCGAGTACAAAACAGACTGATGGCTTCCTCTTTCAGACTTCTTATCATGgCTTCCCAAGTGAATGATCCTAAGAAGTACACAGTGACCACTGCACTGGTTCGGGTGGTGGCAGAGAACCGCTTTCCTCCTTACTTTAACAGAACTACCTACAAGGGTTTCATTATTGAGAACTCCAGCCCTGCGACACTAGTCTCCACTTACGGAAGCGAGGTCCTCATCATTCAAGCCACAGACAGAGATTTCAAAGATGGCATCAACCCAAAAATCACCTATGCCCTTCACCCGATCGCCACCAGCACCAAGCTGTACCATATCACTGAGGACGGTATCCTGATCGCAAAGGCCACTCATCTCAGCGCGTTTGACAGACATATCCTTGAGGTGGTAGCAACAGACCAAGAGTCAGGAGATGTTGCCAACGCCACTGTGGATATTGAAGTTCTACAAAGGGGACAAGCAGTTCCGAGAAGCCCCTTTGGAGAGGAGCGGCTATTTGGGGACGTGAATGTGGGAATAGCTGGAGGCTtggctgctgtgctgctgctgctggcagtGGCGGCATTCTGTCTGCTGCTTAGATTGCTCAGAAGATGGAGACACCGACGGGACCCTGTAGAGAGAGGCTCTGTAGCACTGGGCAAGCACCCCAATGTGGTCAAATCAGGACGACCCATGACTCTTTTAGAGGAAGCTGCCTACAATAACGAGGCCTTCTTGGATCAGGAAGCTTCCAACTCCAGGGGCTCGACTGGAAAGCCAGGAATTTACACGATACGGGGTGAAATGTCCCTGACCCCTGGTCAGGCATATGGCAGCAGGGGGGTGAACAGATCCATGCCCCTTTCAGACATGCTGCCCATTCTGGTGCCTCCTGAGCCCCTGTTTAAAATCGGCATGTTGTCTTTTACATCAAATGAAGGAGCAACAGAGAAATCAGTCTCTTTTGCAGACGAAACAGCAAAAAAGGTGAAAGAGAGCCTGATGGGAGGGCATAATGGAGTGCGGGACAGGGCAGCTATGCTGATGCCCACCTCACAGCAGGCTGCTTTTATCACTGCATCAGAGGTGGCAAGTGCAGAAAACACTCAGGAGAGATTAGATACGAAGAGGAACGCAGGAGACAGCTGTGAAGCAAAAATCTCAAATGGGACCAAAGAGAAATACACACAAACCGTGGCAGACAGATCAAGTCATCATGTGGAGACTGGAGTAAACGTTCCAATGCCCATCTCACATCAGACCACTTTTAACTCTTCACTGGAGACAAACCAGGAGGGACAAGACACAAAGAACACGGATGCTCATTATACGGATGCTACTGAAGAAAGACCATGCAGGCCTATGCACTCTGTCTTCTATGTTGGTGATAATGAGAACACCGTTACTGATGAAGGACAGATATATAAGGCTAACAGTCTATCCAGGCTTATAAGAGACTTAAAGGATGCAAAATCAAAGGATCTGCAGAAAGAGGAGACATCAGACTGCagagaacaaaaaacaaggaGACCAAGTGAAACTCCTTCATATAGATTGATTCCCAGTTCTTCAATGGACGGACTGTTATACTTTGAAGAGGACTCACATGATCTTTAActgtttaaaagacattttttttacaacagtcactcaaaaagtcatgggatataaTAGATAAGATAAATGTACTCTGATCATTAAGTGTTTTCTTAGGGGTCGGCTTGTTAACGCCCACACCTGTACAGGTtaggacaggggtgtccaaacta
>XM_022671647.1
gatgtAAAAGGAGGGAAATAAAATGGTTAGACTCTCCATAAACTGCTCTGGTAAAGCAGGAGatttgttttggacccgtggttctcTCTTTTGGTCATCTCATTGGCTGTAGGTAGCTGCTGCTCCTGACTTATAGTcgccgactgagtcagatattaaacatgttgaatatttgcCATATCAGTCGGTGACAGGTCAGCAAGCATCTTTCAGTTTACACTACACAACAGTGCGAGCACTGAGTGATTCCCGATTTGCTCCGAGCCAAGTTTTTGTTGCCGATCAATGAAAAACTGGCCCaaaatcatgtagtgtgaacctggcattaatgtacaatgtaggaaaaaatacattaacattaaataagaaggtgTATACAAACATTTAACTGGTAATATATGGTGCAATATACTATTTAGAGGAAGACCAGGTTGTTCAAGCTCAAGTACAAGGGTGATCTTGAGCTATCCATTCCTGGAAGTAAAGTTGGTGGAGAAAGTGGCTGTACACAACCAATAGTATTAGCTCTTTAGCCCTCGTTCTCACTTTAACCTGTCTATCAGCTGCCAGAGAGTTATCTCGTCCTGGAAATGCCCTCTAAGCCCCATGTCTGCTCTACACGGGAGCTCTTAATACTCCAGCTAAACACTTTTCACTTGCGCtccctctctgcctctctttctctctcacactctctctctctctctttggccAGTTTGGCAGGCAGAGGAAATCCGTCACATTTGTTGTTGTGGCTCAGCCGCCATCCCAAGCTGCGCAGAGTCCAGACATCTAACCCCAAAAAGCAGAGACATGAGGCCAGAGAGGAGGGAGGCCGCTGCAGGGACGAGCTGCCTGATGGCCTGAGTTACAAACAAATAGCCACACGGAGAAGCTGGGACACGGAGCAAAGCAAAGACAAGGGCTTCCACCATGCTGATACCGTGGAGGACACTGTTCTATCAGATGGTGCTGAACGTGTCATATGACATCGTAAAAGCCAGTTTATGCCTTGGTGGTCATGATATTTTAGCGGCAATTAAAGAAAATAGTCCCATGGGGGAATTCATTGCAAACATCACCATTGCTGAAGAACCAAGGGTCAATAGTATTCGCCTGTGCCTCACCGGAGAGAATGCTGGCTGGTTTTACCTTGAGGGAAGAACAATTAGATTAAACACGTCCTTTTCAAGAGGGCTCGACCGAGAGGTCCAGGGGTCAATTTTGCTGGCCTCCTTAACATGTTATGAGGAGGACACAAAACAGAATGAATACAGAGTGATGGTGGAGATCTTGAATGAAAATGACAACCTGCCATATTTTCTTGAAAAGACTATTCAACCAAGATCTATTAGTGAGTTGACAGCAGTGAACTCTGTGGCGTTTTCAGTTAAAGCCAAAGATGCAGATGGCGACATTATCACATACATCATTGATAAGTTGTCTCCTGATGCCAGCTATTTCAGAATTGACCTTCCCAACAGCGGAATTATTATCTTGAACAAACCACTAGACTTTGAAACTAAAACCGAGCTCCAGGTGAACATATGTGCTGTGGAAATGAACACCATTGAGAAGTACAACACGActgcaacaataaaaataagcgTGCTGGATGGAGATGATCAGTATCCTCAGTTCCTGCCCTGTTCTCCAGTTTCAGAACACACCATATGCACCAACCCGCTATACATCGCTAACATCTCAGAGGAAGCAGAGAACACCATCTTGCATTTCTCACCTGGTCCCATTCATGCTGAGGATGGAGACAAAGACATACTGGCCCCTGTGACCTACGCTATCCTATCAGGTGACGACAATGGCAGATTTACTATCAACCATGAAACTGGAGAAATTAGCCTGAGACGGCGAGTACAAAACAGACTGATGGCTTCCTCTTTCAGACTTCTTATCATGgCTTCCCAAGTGAATGATCCTAAGAAGTACACAGTGACCACTGCACTGGTTCGGGTGGTGGCAGAGAACCGCTTTCCTCCTTACTTTAACAGAACTACCTACAAGGGTTTCATTATTGAGAACTCCAGCCCTGCGACACTAGTCTCCACTTACGGAAGCGAGGTCCTCATCATTCAAGCCACAGACAGAGATTTCAAAGATGGCATCAACCCAAAAATCACCTATGCCCTTCACCCGATCGCCACCAGCACCAAGCTGTACCATATCACTGAGGACGGTATCCTGATCGCAAAGGCCACTCATCTCAGCGCGTTTGACAGACATATCCTTGAGGTGGTAGCAACAGACCAAGAGTCAGGAGATGTTGCCAACGCCACTGTGGATATTGAAGTTCTACAAAGGGGACAAGCAGTTCCGAGAAGCCCCTTTGGAGAGGAGCGGCTATTTGGGGACGTGAATGTGGGAATAGCTGGAGGCTtggctgctgtgctgctgctgctggcagtGGCGGCATTCTGTCTGCTGCTTAGATTGCTCAGAAGATGGAGACACCGACGGGACCCTGTAGAGAGAGGCTCTGTAGCACTGGGCAAGCACCCCAATGTGgaGCCTTCCTCTCCCATTCGGACTCACCAGACCCCATAGGGATTAAATCACAGTTCTGCTATAGCAGACGGGTCCTGCTGTGCTGTACAGAACAGATGTGGGCTATGCTGTCCCAGTGGACTGTTGTGCAAAGAGCACTTCACAATATCCTGGAAAGGGATCATGGCCGACAGCATTGAAGTTGAACCTGGTCATTCTTGCATGTTAATTATCAAAGACTGACCTGCAGTCGTCTCTGCCAAACTCAGCACACTGCTTGGGAAATCCAGCCCTGACTGAAGCCCATATGCTATATGATGgtatgtacagtaaatatatggTCACCGGATTACTGTGGACACTGGAGTCTCTGTTTCCCTCATTCTGCTGTCCAGCTTCAGAAGAGTGTCTGAAGTTTGCTCTGTTTCATAAATCAGTGGATGATTAAATTAACAATCAAATATGCAGTACATATGcatgtaacatttttttatgttttgaactTTTTTGTAAATTGCTACTGTTTTCATGATGTACAATGTGAAGTTTTATACAAAAGACTAGAAATGATGCTATTTATCACAAACACATTTCACAATACCATCAAACAGGGCAAGAGTAGTATTTACATACCATATGTTTATCTTTAGGCTATTGCTATACATACACAATTAGGTGTCAGAATTGAGCACTTTAAGCGAAtaaccacactgcaaaaaaaaa

Function

NR:

description
PREDICTED: cadherin-related family member 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245042.3 True 3623 mRNA 0.46 15 30381722 30406547
XM_022671647.1 False 3225 mRNA 0.45 15 30377181 30406541

Neighbor

gene id symbol gene type direction distance location
irf5 irf5 coding downstream 5813 30337537 ~ 30371368 (-)
LOC103043802 impdh1b,LOC108432555,LOC104968094,LOC107725554 coding downstream 95784 30236929 ~ 30281397 (-)
hmg20a hmg20a,LOC107560003,LOC107727687 coding downstream 532574 29834082 ~ 29844607 (-)
LOC103022709 peak1 coding downstream 564620 29665345 ~ 29812561 (-)
LOC103031543 NA coding downstream 720788 29639675 ~ 29656393 (-)
LOC103025686 drd4-rs,LOC108432516,LOC107591318,LOC107738833,LOC107557292,LOC107732971,LOC107699035 coding upstream 19912 30426459 ~ 30473893 (-)
LOC103041847 arf5,zgc:77650,LOC105916194,LOC106511461,LOC105888566,LOC105020167,LOC106609140 coding upstream 199925 30606472 ~ 30611944 (-)
dennd6b dennd6b,LOC107732989,LOC107738816 coding upstream 218077 30624624 ~ 30642727 (-)
fam3c fam3c,LOC106576502 coding upstream 264787 30671334 ~ 30679232 (-)
LOC103040108 NA coding upstream 282394 30688941 ~ 30708138 (-)
G67640 NA non-coding downstream 49055 30317890 ~ 30328126 (-)
G67629 NA non-coding downstream 99593 30277163 ~ 30277588 (-)
G67628 LOC108432554 non-coding downstream 140466 30233873 ~ 30236715 (-)
G67575 NA non-coding downstream 311487 30065359 ~ 30065694 (-)
G67572 NA non-coding downstream 336693 30040265 ~ 30040488 (-)
G67672 NA non-coding upstream 18037 30424584 ~ 30425454 (-)
G67674 NA non-coding upstream 21411 30427958 ~ 30428487 (-)
G67675 NA non-coding upstream 40193 30446740 ~ 30446942 (-)
G67676 NA non-coding upstream 41010 30447557 ~ 30468713 (-)
G67679 NA non-coding upstream 79105 30485652 ~ 30485914 (-)
fuk fuk other downstream 909954 29443356 ~ 29467227 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other downstream 2244393 28121260 ~ 28132788 (-)
tmem258 NA other downstream 2341220 28032701 ~ 28035961 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 4846201 25516515 ~ 25530980 (-)
G66642 NA other downstream 5715279 24660024 ~ 24661902 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 191821 30598368 ~ 30600908 (-)
G67755 NA other upstream 396163 30802710 ~ 30805567 (-)
G67830 NA other upstream 569330 30975877 ~ 30992883 (-)
tmem60 tmem60 other upstream 674233 31080780 ~ 31091017 (-)
G67863 NA other upstream 687199 31093746 ~ 31149733 (-)

Expression


Co-expression Network