LOC103022369 (LOC103022369,LOC108436003)


Basic Information

Item Value
gene id LOC103022369
gene name LOC103022369,LOC108436003
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1842278 ~ 1845762 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252400.3
CCCCTTACCTTACTTTTACGTTTATACTTTacgtagttttgaaaccagtacagTACTTACActtgcataaaaataaaaatatttaattggtaCTTCAACCTCTATGGAAGTTTAAACGGTAGTATTtgtacttctacctgagtaattaTTGTGAGTAATTTTGAGACCTGGGGGAGTAACATTCAGGCACAAGTATGCAACTGCtgcaaatgtatatatttattataagtatagttaaataatcattaattgtaAGAATATGTTAAATGCTTTACCACCAAAACCGTATGATTATTTGAATAGCTCATCCTTTTCTAATCTTGAACAACTTCAAAggaactacatttcccaggaTCCATTGCGCTCGTAAGCGCATGTTTCACGGATCATGTGAATCTTCATCTAAAAATAAAGTGAGTTTTACTCGTCTGCATGTATAAACATCCAGCGTGTGTGTGGTAATATTGCACTGAGCCAAACATGGATTTAACTGCGGCTAGACAGACGTTTTATGGAGATATAGGTTTCTGGGCGGACCGCACTCCTGTACATGAAGCTGCTTCTCTAGGCCGGGTTCTGCAGCTCAGACAGCTGCTGGATGGAGGGGCTCTGGTGAACACAGTGACGGTGGATAACATCACCCCCCTACACGATGCCTGCATCCAGGCCCACCCGCAGTGCGTGCGCCTGTTGCTGAACGCCGGAGCGCAGGTTGATGTGAGGAATATCCATGGTAGCACCCCTCTGTGCTATGCATGTGCAGCAggcagtgtggagtgtgtgaggcTGCTTCTGGATCATGGTGCTTCAGTCAACCCCACCCTCACTGCCCTCACTGCCTCCCCACTCCACGAGGCCTGCATCCGAGGTAATCCAGAGTGTGTAAAGCTGATATTATCAAGGGGAGCACAGCTGGAGGCGTTTGACATTTACTTCGGGACGCCGCTGCATGCAGCCTGTGCTAAAGAACATGTGGAATGTGCTCTGCTGCTCCTTAATGCAGGTGCCAGAGTGAATGCCATAAAGTTCCATGAGACAGCTCTCCATCATGCTGCGAAAGTGTGCCGGACGGACCTCATTgagcttctggtggagtttggGGGAAACATTTACGTCACAGATAATCTGGGTCGCAAACCCATAGACTACACCACTCCTGGCTCTCCAGCTCACCTCTGTCTACAGCACTTTGAAAatattcctctctctctgcagcagcTGAGCCGTATTGCACTGAGGACAATGCTGGGAATCAGAGCTCTGCAGGTTGTGACCAAACTGGACATCTCACAGCGCATAATCAGTTACCTCTGTTATAAACAATGGTCCAGCACAACTgaattataatactgtattaaagCTGAACACAATAATGCAAAGAGGAAAAAGAGTCCATGGACTTTGTTTTTGCACCTTTAGCTGCTAAGGTCTTAAAATGTGGTGCCATGAATGTTATGATTGtaataatgtataaatgtaataaaaaataaatatta

Function

NR:

description
ankyrin repeat and SOCS box protein 13-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252400.3 True 1496 mRNA 0.44 6 1842278 1845762

Neighbor

gene id symbol gene type direction distance location
LOC103022887 gdi2,LOC108436005,LOC108279819,LOC107754057 coding upstream 851 1826840 ~ 1841427 (+)
ankrd16 ankrd16 coding upstream 16843 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding upstream 29420 1812771 ~ 1812858 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding upstream 148312 1630873 ~ 1693966 (+)
cracr2a NA coding upstream 437779 1397198 ~ 1404499 (+)
LOC103022068 asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562 coding downstream 776 1846538 ~ 1861838 (+)
mkrn1 mkrn1,LOC107725576 coding downstream 139111 1984873 ~ 2001629 (+)
tmem121b cecr6 coding downstream 158080 2003842 ~ 2005246 (+)
lmo3 lmo3,LOC107757261,LOC107550907 coding downstream 428605 2274367 ~ 2324260 (+)
wif1 wif1,LOC107757271,LOC107594874,LOC107725640 coding downstream 768446 2614208 ~ 2642104 (+)
trnay-gua_8 NA non-coding upstream 20502 1821689 ~ 1821776 (+)
trnay-gua_7 NA non-coding upstream 20943 1821248 ~ 1821335 (+)
trnay-gua_6 NA non-coding upstream 23677 1818514 ~ 1818601 (+)
trnay-gua_5 NA non-coding upstream 24123 1818068 ~ 1818155 (+)
trnay-gua_4 NA non-coding upstream 25788 1816403 ~ 1816490 (+)
G61168 NA non-coding downstream 7553 1853315 ~ 1855346 (+)
G61222 NA non-coding downstream 187241 2033003 ~ 2033287 (+)
G61233 NA non-coding downstream 245099 2090861 ~ 2094032 (+)
G61236 arhgef39,LOC107725686,LOC107655603 non-coding downstream 273037 2118799 ~ 2152586 (+)
G61302 dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244 non-coding downstream 569271 2415033 ~ 2424116 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 33348 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 360860 1445635 ~ 1481418 (+)
G61014 NA other upstream 793222 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 798962 853526 ~ 1043316 (+)
LOC103045537 NA other upstream 1217269 599659 ~ 625009 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 75633 1921395 ~ 1935499 (+)
G61575 NA other downstream 1450784 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 3894793 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 3936329 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 4136474 5982236 ~ 5993994 (+)

Expression


Co-expression Network