LOC103022887 (gdi2,LOC108436005,LOC108279819,LOC107754057)


Basic Information

Item Value
gene id LOC103022887
gene name gdi2,LOC108436005,LOC108279819,LOC107754057
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1826840 ~ 1841427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252402.3
CCTGCCTGCCCATACACCGCCTTCTTTCACTCGCAGCTCCGCTGATCTCCATTTTCTTCAGGCCAGCGTACAGGAAAAGGGGATTAAACTCGAggaaaaatgaatgaagaaTACGACGTTATCGTGCTGGGGACCGGACTCACGGAATGTATCCTGTCGGGGATCATGTCTGTGAAGGGGAAGAAAGTCCTCCATATGGACCGGAACTCTTATTATGGGGGAGACAGTGCCTCCATTACCCCTCTGGAGGATCTGTTCAAACGTTTCAGTCTACCTGGCAGCCCACCTGAGTCAATGGGAAAAGGCCGTGACTGGAACGTTGACCTCATCCCTAAGTTCCTCATGGCTAACGGTCAGCTGGTTCGTATGCTGCTGATCACACAGGTGACACGTTACCTGGACTTCAAAGTGATCGAGGGAAGCTTCGTCTACAAGAAGGGTGGCATCTACAAGGTGCCCTCCACTGAGACTGAAGCTCTAGCTTCTAGTCTCATGGGGCTGTTTGAGAAGAGGAGGTTCAGAAAGTTTCTGGTTTTTGTTGCCAACTTCGATGAGAACGACCCAAAGACCATGGAGGGTGTCGACCCTAAGAAGACCACAATGCGTGAGGTTTACAAGAAATTTGACTTGGGCCAAGACGTCATTGACTTCACAGGCCACGCCATTGCCCTCTATCGTACAGACGATTATCTGGATCAGCCCTGTATAGAGACGATAAACAGAGTTAAGTTGTACAGTGAGTCCTTGGCCAGATATGGGAAGAGCCCATACCTGTACCCCCTGTATGGTCTTGGAGAACTCCCCCAGGGTTTTGCCAGATTAAGTGCCATCTATGGAGGAACTTACATGCTGAACAAGCCAATTGAAGAAATCATCTTTGAGAACGGCAAAGTAGTGGGTGTGAAATCCGAGGGAGAGATTGCCCGCTGTAAGCAGCTGATTTGCGACCCCAGCTATGTCTCAGATCGTGCCAAGGTGGTGGGCAAGGTGATCAGAGTCATCTGCATCTTGAGTCACCCGATCAAGAGCACCTCAGATGCCAATTCCTGCCAGATCATCATCCCCCAGAACCAGGTCAACAGGAAGCACGATATCTATGTGTGCATGATCTCATATGCACACAATGTGGCAGCCCAGGGTAAATACATTGCCATTGTCAGCACCACTGTGGAAACTAACGACCCTGAGAAAGAGATCAAGCCAGCCCTGGACCTCCTGGAACCTATCGAGCAAAAgtttgtGAGCATCAGTGATCTGTATGCTCCAACTGATGTCGGAGCTGAGAGCCAGGTCTTCATCTCCCGCTCCTACGACGCCACAACTCACTTCGAGACAACTTGTGATGACATCAAAGACATCTACAAGCGCATGACCGGCACAGACTTTGACTTTGCTGAGATGGAGCGCAAGAAGAACGACATCTTCGGCGATGCGGCCGACCAGTAATGAGGCAGAGATCACTGTTGAATATCAGATATTCAGAGGATGGTAAATCtttaagaaacaaaagaaaaattgaaaaaaaagaaaaaaaggtaacCAAAATGGGctagatgatgatgatgatttcaAGTATATGTTTTTGCCCGTAAAGGAATTTCATGTATACCGTTACAAATTTAGCATTTAAAGGGGGGGAGAAGGGTCTGGCGGTCTGCTTTGTATAATCAGGTTGAGAGACATTGCACTGATTGTTGGTCGACGTCCTGTATCTGGTTGCCATCATGTCATTGTGTTGTCACCCTGCTCAGACAGGGAGGATGTTTAGTCCAAAGATGCCAAATGATCAGATCTTTCTCAATTGATATAAAGGCACAGGTAACAGACAGTacttaaacaaagaaaaacgcaaagtattttttataattatgtgCAAAAACTCAGACGGCCTCTCGAGCAGAAGTGTGTAGGAGACGGAAAAACTGTAACATTAATGAGCTGGTAAGGCAGAAGAAATCCTCAAATAATTTTAAGCCGCACTCACCAACTTGTATGAAAGGAATTGATGCATTGTGTTTTACTACAGATTGGTGCTTTAACTAGTTACTGAACTGTAGCTAGCAACGTATGTCCTAACCTTGCTTTGCAAATGTAAGGGAAGTATCAAGCACATGAAATGTATATAATCTTCTTCTCCTTCAAGTATTGCTCATTCAGCCTCTgattatatacacattttttgctaaaaaGACAAATGAGAAAACTGCATTAATTTGACATAACTGACCTTTTAGCTGTAAATTGTGCGGCTGAAAATTGGAAGGACGGAGCTTGGGGCTTTTCCAGCAATTGCCTTTACATCTCTGTTGTGAGGGGCAGTGCTTGATTCTCAGGCCATTTGGTCAGAGGCTGGCACATGTCAACGGGAAAGCTACTTAACCGTATAAGTCTGTGAGAGCTGCTTTGAACACTGTGCTTTAGAGGAACTGTCTCTCTGGCTGGTTTTGGTTGCAGAGAGAGAAGCTCTTAAAAGCAGATGAGAAAAGTGGCCTAGTTCTGCTTTATATCTCTGTTGCGTTAGTAAGGACCAAATGTCTGCTGCAGTATTGACATGACGGGGGCCCTGTGCGAAATGTCATCAGTGTTTTAAACAACCAAGAACTGTGCTGAGCAAAATGGGGCTTAAATGATTTCTGTACTGCGAAGTAAAATGTTATCTTGTGAAAA

Function

symbol description
gdi2 Predicted to enable Rab GDP-dissociation inhibitor activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Orthologous to human GDI2 (GDP dissociation inhibitor 2).

NR:

description
PREDICTED: rab GDP dissociation inhibitor beta-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252402.3 True 2667 mRNA 0.45 11 1826840 1841427

Neighbor

gene id symbol gene type direction distance location
ankrd16 ankrd16 coding upstream 1405 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding upstream 13982 1812771 ~ 1812858 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding upstream 132874 1630873 ~ 1693966 (+)
cracr2a NA coding upstream 422341 1397198 ~ 1404499 (+)
LOC111192900 NA coding upstream 819013 1000887 ~ 1007827 (+)
LOC103022369 LOC103022369,LOC108436003 coding downstream 851 1842278 ~ 1845762 (+)
LOC103022068 asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562 coding downstream 5111 1846538 ~ 1861838 (+)
mkrn1 mkrn1,LOC107725576 coding downstream 143446 1984873 ~ 2001629 (+)
tmem121b cecr6 coding downstream 162415 2003842 ~ 2005246 (+)
lmo3 lmo3,LOC107757261,LOC107550907 coding downstream 432940 2274367 ~ 2324260 (+)
trnay-gua_8 NA non-coding upstream 5064 1821689 ~ 1821776 (+)
trnay-gua_7 NA non-coding upstream 5505 1821248 ~ 1821335 (+)
trnay-gua_6 NA non-coding upstream 8239 1818514 ~ 1818601 (+)
trnay-gua_5 NA non-coding upstream 8685 1818068 ~ 1818155 (+)
trnay-gua_4 NA non-coding upstream 10350 1816403 ~ 1816490 (+)
G61168 NA non-coding downstream 11888 1853315 ~ 1855346 (+)
G61222 NA non-coding downstream 191576 2033003 ~ 2033287 (+)
G61233 NA non-coding downstream 249434 2090861 ~ 2094032 (+)
G61236 arhgef39,LOC107725686,LOC107655603 non-coding downstream 277372 2118799 ~ 2152586 (+)
G61302 dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244 non-coding downstream 573606 2415033 ~ 2424116 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 17910 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 345422 1445635 ~ 1481418 (+)
G61014 NA other upstream 777784 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 783524 853526 ~ 1043316 (+)
LOC103045537 NA other upstream 1201831 599659 ~ 625009 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 79968 1921395 ~ 1935499 (+)
G61575 NA other downstream 1455119 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 3899128 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 3940664 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 4140809 5982236 ~ 5993994 (+)

Expression


Co-expression Network