ankrd16 (ankrd16)


Basic Information

Item Value
gene id ankrd16
gene name ankrd16
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1812200 ~ 1825435 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252403.3
tgagggGCTGATGTTGCTGCTTGCTTCATTTGTGCGGATTATGTCAACAAACACTGAGTGAAATGATAAAGTGGTGCAGTAAGGATTTAACGCTACAGTAcaggttatattatattatttaatttagcaaAATTGGCTTTggcttaaacttaaaataatggAGGAGGAAGCTATATTCAAGTCCTTAATCAGGTTAACGCAGGATGGACATTTGAGCATGCTTAGAGaggaaatagagaaaaaagacCCGATGAAGCAGACGCTGCAGGCTCACTTTGGGAGATCAGGAGACACTCTTTTGCACTATGCTGCCAGACACGGGCACCTCGAGGTGCTGAGGTATCTGGTGGAGGATGTGGGGATGGACATTGAGCTGTACAACAGTGATTACAAGAGAGCTTTGCACGAGGCTGCGTCCATGAGCCACGAGCAGTGTGTTCAGTATCTCATCCACAGAGGAGCCAAAATTGACACGCTGAAGAAAGCGGACTGGACTCCTCTGATGATGGCTTGCACCCGACGGAACCTTGAGGTTATTAAACTGCTTCTGGATCACGGCGCTGACCCCACCATCCGCAACAAGGACGGCTGGAACTCTTTCCACATCGCGTGTCGAGAAGGTGATGCTGCTGTGATCGAGCATCTACTGCTGGTCAAGCCTGAGGTGTGGAGGACAGAGAGCAAGACCCGCCGGACCCCGCTGCATACTGCCGCTATGCACGGATGTCTGGAAGTTGTCAGTATCCTTCTTGAGAGaTGTTCTTATAAATCTGACGAGAAGGACAGCTGTGGAGTCACTCCGTTCATGGATGCTGTCAGAAACGGACACCTTGCAGTAGCCAAGCTGCTGTTGGAGAAACACCAAGCCTCCCCAACTGCTGTAGATATTCTGGGAGCACAGCCCTTACATCAAGCATCAGTGACAGCTCAAGAAGAAGCTTTACATTTCCTTGTCCAGGATCTCAACATTGACGTGAACGCAGGAGCCACCAAGTTGGAGCTTACTGCTTTACATTATGCTGCTAAGGAGGGTCACACAAGTGCCATAAAAACTTTGCTACAGTTGGGTGCTGATCTCCACGCAAGAGATAAGAAAGGAAGATCAGCGTTACATATGGCGTGTATTGGCCAGCATGCAGGAGCAGCCACGACCCTTCTGCAGCTAGGACTCAGGGACACAGAGGACAGCACTGGCACTACGGCCAGACAGCATGCCAAGAAACCAGACTTAACCAGAGTGTTCGAGAGCCCTGACATAGAGATAGAACATTAACAACAGGCTATGTGAGAAATTTAACTTAATAATGAGAGCCCTTTGCAAAtgtaaaccaataaaaaataaagcacttCCATGCAGAAATGTAGACATTTTCTATTGTCTATAATGTGTGGGCTGTAGAGAGCCAGTCACGGGCCTGAAGTGTGTTGTTGATGTTGGTCAGACACTAAAGGTCAATTTATGCCTACACTGTAGCCCATGCATACCCCTCGTCCCTCCCACGGTTTAAACGATTTAAAGTGATTCAGACTCACCAACACACAAGTATAACGCAGAACTATTGAGTACTTGAGCAGACTATTCTTTAGACAATGCATTGACTCAACGCAGAATTATAAACTAGTAGGTAAGGTAAAGGGGTTGTGCAAATATACCTCAGTGACTgcaaaatgaatacagaaaagCATGAAGATCATAGAGAAACGTCCTGCCACATCTTTCTCACAGACGCCatggaaaacaaataaaatagaataatgaTGTTCACACCAGGAATGCACTGAATGcggttcatactgtctgtaaTAAAATGAATGTCAAAATcaa
>XM_022671213.1
ctgagggGCTGATGTTGCTGCTTGCTTCATTTGTGCGGATTATGTCAACAAACACTGAGTGAAATGATAAAGTGGTGCAGTAAGGATTTAACGCTACAGTAcaggttatattatattatttaatttagcaaAATTGGCTTTggcttaaacttaaaataatggAGGAGGAAGCTATATTCAAGTCCTTAATCAGGTTAACGCAGGATGGACATTTGAGCATGCTTAGAGaggaaatagagaaaaaagacCCGATGAAGCAGACGCTGCAGGCTCACTTTGGGAGATCAGGAGACACTCTTTTGCACTATGCTGCCAGACACGGGCACCTCGAGGTGCTGAGGTATCTGGTGGAGGATGTGGGGATGGACATTGAGCTGTACAACAGTGATTACAAGAGAGCTTTGCACGAGGCTGCGTCCATGAGCCACGAGCAGTGTGTTCAGTATCTCATCCACAGAGGAGCCAAAATTGACACGCTGAAGAAAGCGGACTGGACTCCTCTGATGATGGCTTGCACCCGACGGAACCTTGAGGTTATTAAACTGCTTCTGGATCACGGCGCTGACCCCACCATCCGCAACAAGGACGGCTGGAACTCTTTCCACATCGCGTGTCGAGAAGGTGATGCTGCTGTGATCGAGCATCTACTGCTGGTCAAGCCTGAGGTGTGGAGGACAGAGAGCAAGACCCGCCGGACCCCGCTGCATACTGCCGCTATGCACGGATGTCTGGAAGTTGTCAGTATCCTTCTTGAGAGaTGTTCTTATAAATCTGACGAGAAGGACAGCTGTGGAGTCACTCCGTTCATGGATGCTGTCAGAAACGGACACCTTGCAGTAGCCAAGCTGCTGTTGGAGAAACACCAAGCCTCCCCAACTGCTGTAGATATTCTGGGAGCACAGCCCTTACATCAAGCATCAGTGACAGCTCAAGAAGAAGCTTTACATTTCCTTGTCCAGGATCTCAACATTGACGTGAACGCAGGAGCCACCAAGTTGGAGCTTACTGCTTTACATTATGCTGCTAAGGAGGGTCACACAAGTGCCATAAAAACTTTGCTACAGTTGGGTGCTGATCTCCACGCAAGAGATAAGAAAGGAAGATCAGCGTTACATATGGCGTGTATTGGCCAGCATGCAGGAGCAGCCACGACCCTTCTGCAGCTAGGACTCAGGGACACAGAGGACAGCACTGGCACTACGGCCAGACAGCATGCCAAGAAACCAGACTTAACCAGAGTGTTCGAGAGCCCTGACATAGAGATAGAACATTAACAAATATACCTCAGTGACTgcaaaatgaatacagaaaagCATGAAGATCATAGAGAAACGTCCTGCCACATCTTTCTCACAGACGCCatggaaaacaaataaaatagaataatgaTGTTCACACCAGGAATGCACTGAATGcggttcatactgtctgtaaTAAAATGAATGTCAAAATcaa

Function

symbol description
ankrd16 Orthologous to human ANKRD16 (ankyrin repeat domain 16).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 16 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252403.3 True 1825 mRNA 0.46 7 1812201 1825435
XM_022671213.1 False 1455 mRNA 0.47 8 1812200 1825435

Neighbor

gene id symbol gene type direction distance location
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding upstream 118234 1630873 ~ 1693966 (+)
cracr2a NA coding upstream 407701 1397198 ~ 1404499 (+)
LOC111192900 NA coding upstream 804373 1000887 ~ 1007827 (+)
LOC111192898 NA coding upstream 868279 929610 ~ 943921 (+)
LOC111192897 NA coding upstream 884656 919174 ~ 927544 (+)
LOC103022887 gdi2,LOC108436005,LOC108279819,LOC107754057 coding downstream 1405 1826840 ~ 1841427 (+)
LOC103022369 LOC103022369,LOC108436003 coding downstream 16843 1842278 ~ 1845762 (+)
LOC103022068 asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562 coding downstream 21103 1846538 ~ 1861838 (+)
mkrn1 mkrn1,LOC107725576 coding downstream 159438 1984873 ~ 2001629 (+)
tmem121b cecr6 coding downstream 178407 2003842 ~ 2005246 (+)
G61132 NA non-coding upstream 21768 1789535 ~ 1790432 (+)
G61131 NA non-coding upstream 51018 1758838 ~ 1761182 (+)
G61100 NA non-coding upstream 190643 1609125 ~ 1621557 (+)
G61085 NA non-coding upstream 306383 1505343 ~ 1505817 (+)
LOC111192863 NA non-coding upstream 761110 1050130 ~ 1051090 (+)
G61168 NA non-coding downstream 27880 1853315 ~ 1855346 (+)
G61222 NA non-coding downstream 207568 2033003 ~ 2033287 (+)
G61233 NA non-coding downstream 265426 2090861 ~ 2094032 (+)
G61236 arhgef39,LOC107725686,LOC107655603 non-coding downstream 293364 2118799 ~ 2152586 (+)
G61302 dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244 non-coding downstream 589598 2415033 ~ 2424116 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3270 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 330782 1445635 ~ 1481418 (+)
G61014 NA other upstream 763144 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 768884 853526 ~ 1043316 (+)
LOC103045537 NA other upstream 1187191 599659 ~ 625009 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 95960 1921395 ~ 1935499 (+)
G61575 NA other downstream 1471111 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 3915120 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 3956656 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 4156801 5982236 ~ 5993994 (+)

Expression


Co-expression Network