LOC103023715 (LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310)


Basic Information

Item Value
gene id LOC103023715
gene name LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1630873 ~ 1693966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252404.3
cctctcagtCTGCCTGAGCTGTGGACAGGGCTGGAAGTGTGTGTCcgggtgtgtgagagagagagagagagagtgtgtgtgattgtgtgcagAGTGTAGgggggggagagaaagagagagagagaaagaaagagagagaaagagagaggctggAGAGAAGAAGAGTGGAGTCGTAGCATTGCGGGATCCCTGCGAAAAAAAGTCTCAGGACTCTCAGCTCATTTTCCACTCAGTACCTGCAGATGCTGTAGAGACACAGAGCAAGGGGAGGGAGAGGAGGAATACACCTGAGCACCTGAGCAACTGAACACCTGAGCAACTCGACCTGAACACCTCATAAACCCAACCCAGGAAACACCTCCATGGAGCCATGTGAGCCCCAACCCATGCCTGCCCTGCTGGGGATCTGACTGGGATTGGCTACTTTGGAGAAGCTCGCAGCTCAGGGTCTCTGTGGTCGAGGAAGGACTGCAGAAACCTGCGCTTCACCCCAGAGGGAGGTGCTCTTTCCTGGCCACTCTGGGCTGTGAGCCCCTCCTGGGCTGGAGAGCAGCGCTCCAGCACCATGGATTACCTGATAGGGATAGTACTGCTGCTGTGTGGGGCGACACTGCCCGAGAGAGTGACCCCGCAGCAGGGCAAGAGGAACGTGCCCCGGCTCAGGCTGTCCTACACGGagATGCTGGACTCCAGTAATTTGGTGACGTTCATCGGACTGGCGAACAGCTCGGGTTATGACACGTTCCTAATGGAtgaggagagagggaggttaCTAGTGGGAGCAGAGGACCATGTGTTCTCTTTTGACCTAGTCAACATTAACAGAGACGTCAAACAGATTGCCTGGCCCGCTACACCTTCGAAACGGGACGAGTGCAAGTGGGCAGGAAAAGACCTCGGGAAAGAATGTTCCAACTTTGTGCGGGTGCTGCAGCCGTACAACCAGACGCACCTATTCGTCTGCGGCACTGGAGCCTTCCACCCCATCTGTGCCTACCTGGAGATTGGCAAAAGAGCAGAGGACAACGTTTTCAGGCTAGACACCCATTTCGAGAACGGTCGTGGGAAAAGCCCCTATGACCCGAAGATGCTGTCCTCCTCTCTGCTGATTGATGGGGAACTTTACTCTGGAACTTCGGCAGACTTCATGGGGCGTGACTTTGCCATCTTCAGAACTCTCGGAGCTCAGCACCCAATCAGGACGGAGCAGCACGATTCCAGATGGTTGAATGACCCCAGGTTCGTTGGCATTTACCTCATCCCCGAGAGCGATAACCCAGAAGACGACAAGATCTTCCTGTTCTTCAAAGAGAACGCCATGGATGGAGAACACACAGGCAAAGCCACCATCTCCAGAATAGCACAACTGTGTAAGAATGACCAGGGAGGACACAGGAGTCTGGTGAATaaatggacaacatttctaaaGGCGAAGCTGACCTGTTCAGTTCCGGGCCTCAATGGAATAGACACTCATTTTGATGAACTCCAGGATGTGTTCATAATGACTGCCAAAGACCCCAAGAACCCAGTGATCTACGCTGTCTTCACTACCTCCAGTAATATCTTTCGCGGATCAGCGATCTGCATGTACAGCATGGCCGACATCAGGAGGGTGTTTCTGGGTCCCTACGCCCACAGAGATGGGCCCAACTACCAGTGGGTTCCGTTCCAAGGCAGGGTGCCGTATCCTCGGCCTGGCACGTGTCCCAGTAAGACCTTCGGTGGCTTCGACTCAACCAAAGACCTCCCAGACGATGTGATCACGTTTGCACGTCTGCACCCAGCCATGTATAACCCTGTACAACCGGTAGGCGGTCGCCCCATTGTGGTGCGAACAGACGCTGAGTACCAGTTCACCCAACTGGTAGTGGACCGAGTGGAGGCTGAGGATGGGCAGTATGATGTCATGTTCATTGGCACAGATATGGGCACAGTGTTGAAGGTGGTGACCATCCCCAGAGAGAGCTGGCATGACCTGGAGGAGGTGGTGCTGGAGGAGATGACCGTCTTCAGGGAGCCGACCCCCATCACTGCCATGGAGCTCTCCACTAAACAACAACAACTGTACCTGGGTTCTGCTGTGGGAATATCGCAGATGCCTCTGCATCGCTGCGAGGTGTACGGAAAAGCCTGCGCTGAATGCTGTCTTGCCAGAGATCCGTACTGCGCCTGGGATGGAACAGAGTGCTCCAGATACTTCCCCACGGCCAAGAGGAGAACAAGGAGACAAGACATAAGAAATGGAGATCCTCTCTCCCAGTGCTCTGATCTGCAACATAAtgatgATCTGGAGGGCTTCAGCAGTGTGGAGGAGAGAAGTGTGTATGGAGTGGAGAACAGCAGCATGTTTCTGGAGTGTAGCTCAAAGTCTCAGAGAGCCCTCATCTACTGGCAGATCCAGAGGCCCAACAATGACCATAAAGATGAGatAAAGCTGGATGATAGAGTGGGTCACACAGAGCGAGGTCTACTGATCCGCAGCCTGACGCAGTCTGACACCGGTGTGTACCACTGCCACGCAGTAGAGCATGGCTTCATCCAGCCGCTGCTGCGCCTCACCCTGCAGGTCATCCCGTCTCAACGAGTGGGAGAGCTGCTACTGCGCACAGGCGCCGTCGACCGTGAGCCCGTCCCCAAACATAAAGTGTGGTACCGCGATTTCCTGAGCCTCCTGGAGCATCCGGATCTGCACAGCGTGGACGAGTTCTGCGAGCAAGTCTGGAGAAAGGAACGCAAGCAGCGTGGCAAAAAAGCCCCAAAAGCTGGACCAGGGTTCAAACAGGCTCAGAAATCTGCCCAGCCCACCAGCCAGGGGTTGCAGAGTTCAAGCCAGAATCAAAACGACCAGAGAGCGTCGAGCGGCCCTAAAGCGACTAACGGTCCCGGTGGCCCATTTCTGCCCAAGACAGCTGGAACACAGAGGAGCCAAATCCTGCAGAGTACCACAAGCACAGACAACCAGAGCCCCAGGCCGAGTCCGGTCAGCCCCAAGGTCCAGAGCACTCAAGTAACCCAGAGTCAGGGGAAGAGAGGCGGACCACCAGCCCGAAGAACGCCTCCCAACACTGCCAAGTGGAAACAACTCCAGGAGAACAAGAGGGGACGCAACCGCCGCACCCACGAGCAACAGAGACCACCTCGCAGTGTGTGAAGCTACAGGTGCCCAAACGAACTAGCTAACATCAGACCCATCCATTTGCAATCCTAAACAAGCAGACATCAGCTCAGTTCACTCAGAACAGCCTTCATATACATGTGTACATGTtgcaaacattcacacaaaagcacaaaaactgaacagataaaaacagaaataaaaaacttaaaagagCAGACCTAGAAGATATGGACTAGTTTTGAACTTTATGTCACTGGTTTACCAGAAAAAAGCACAATTACAGTAACGTAACATCAAGAACACCTCACAGCTCACAGAGTGTACACAATGACTGATACACTCGCCTTTCTGCCAACACATAACACATTCTGATGCTAAAGGGCATGACAGTGTGGTAACCCATAGGATTGGACACTTTCACCTTGGAGTAAGCGAAGTGGGATCACCATTTCCAGACTACTGGGACAAGGTTAAAAACCTTCCATGGAATTCATAGactccttcttcttcttggaGAACTGTGCCATTCAGTCATTGCCATGCCATGGTTCAAAATCAGACATCACCCTCTTAAGTGGACTGGTTTCCAGCCTGAAAGATAAAGGAAAAAGATAACAAATGATGAAAACTGGAGTCTGGTCACTCTGATTCATATGAACTGTATTATAGGAGTATTATAGTGGTCACTGTATGGAAAATAACTGCAAAACCATGAACACCATGGattcatcttaaaaaaaacattagcctAATGAATTGCTGTATATTCATTATTAACAAGTGACCCAAATGGACTAAGACACTGAAACAGGAGGAGAATGCTCTCCAGAGGACATAGATCAAATATGTTGTGCATGTTGTTTAATTGAATAGGCTACATAAGCTTTCTCCAGTCAGTCACATAGCTAAACTATTCTAAATGAGATTCTATCGAGGTTTAAAAATCACAGGGGTTCTTTATAACAGATCTGACAAATCAATTCTGATTTTATTGCAAATAACGAtggaataaaaatgaacatgtcTCGTGCCAACTGCCGCATCTTCTGAAACAAAGAAAAGGTGCTGTGTTCAGATATTGCCATACCttgactgtttttattttaacttatttttatgCTCTTTTTTTGCCTCATAcaaatgtgctcttacagtctaTGTTGTAGGTTAGGCTGAAATATagagtgtaaatatatacagccaGACACCACTTGACTATTTattgctgatttttttaaagggttacagttatttttgatattatgatattatggtGTTTTGAGGTCATATGTAAAACAAAAGTGACTGAATGTGGTGATGCACATAGATggaccaatattttttttttttccttttattttacatagaGTTGAGCGTTGCAGCTCAAACTACACACAATAAGTTGAATCCTGAAATGTCTCCCCCATTTTTGCCCAGCTGGCACCAGATGATATTTTGACATTTGGAGAATTTGGGAATttagatgaaaataaaaaacaggttaatgtaaaaaaaaacaacgttgAACAGATGTTGAAAAATTCACAAGTCACAGAACAATCAAAAAACAGTAGTAAATTTGGGTTACTTAACACCATGATCTGAAACCAACAAAATATCAGCAtctaataatgataaaaaattgagttttgcaGATGTTTGGTTTGGGGTTTTGGTCGCTATACCTCttaatatatataacacatCAATGTTCGATGGTGGCTTGGCAAATATCAACGTCAGCTGTCATCACAATTCTGCATCTTTGACTGTTGCAATATTGGTGTaggttggtggccagctgggtgCCCTCTCTGAAAATTACAAAGTTTACAATTTAGTCTGTTTCCTTTAgtatttttctctctgtaaTGCCCCCAAACGAATCTGTCTATAGATCATTGCCTTGTCTCTGTATCACACATTCATCAAATGGAACAAATACAGTATGAATATTGGATAAAACTCGAGTATGTCTAACCTGTAAAGATGAATGCCCCCATCATAAACTGTGTCTGAATCTCCTGTAAGAAAGTGTGTTCGGTGAAAAAAGAAGTCACACCGAGGAGCCACCGAGTACATACTGCATGTGCATTCTTAGTGCATCTTCTTTATTGTCTGTGTTTTGTGTGAGGTCACTCCCTTGCCCTGAGCAAAAGAGatgtgaatattttttattttgttttacttataCCAAGATAAATATGTCCGCCCCCCTTTTTTGCGTATTATAAAACTGTAATCTTTTGTACAAATATCCCCCACCCCACCCTCCTCAAATGTATGATGTTTCAATGCAATACAAAGCTGTGTCCATCAGATGGCACTCCCACCACCTCCTGCTGCAGGCCTGTTCCATGTTGGGCTGGAGacaggaggaaaggagggagtTGGGAGCTCATATAACTGTCAATGGGTGTTTCTGGCATGCATTCGgttgtctaaataaatatttcctCTACCACTCTA

Function

NR:

description
semaphorin-3aa-like

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process
GO:0048844 artery morphogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0035441 cell migration involved in vasculogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252404.3 True 5590 mRNA 0.47 17 1630873 1693966

Neighbor

gene id symbol gene type direction distance location
cracr2a NA coding upstream 226374 1397198 ~ 1404499 (+)
LOC111192900 NA coding upstream 623046 1000887 ~ 1007827 (+)
LOC111192898 NA coding upstream 686952 929610 ~ 943921 (+)
LOC111192897 NA coding upstream 703329 919174 ~ 927544 (+)
LOC111192896 NA coding upstream 716568 912891 ~ 914305 (+)
ankrd16 ankrd16 coding downstream 118234 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding downstream 118805 1812771 ~ 1812858 (+)
LOC103022887 gdi2,LOC108436005,LOC108279819,LOC107754057 coding downstream 132874 1826840 ~ 1841427 (+)
LOC103022369 LOC103022369,LOC108436003 coding downstream 148312 1842278 ~ 1845762 (+)
LOC103022068 asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562 coding downstream 152572 1846538 ~ 1861838 (+)
G61100 NA non-coding upstream 9316 1609125 ~ 1621557 (+)
G61085 NA non-coding upstream 125056 1505343 ~ 1505817 (+)
LOC111192863 NA non-coding upstream 579783 1050130 ~ 1051090 (+)
LOC111192923 NA non-coding upstream 581817 1047797 ~ 1049056 (+)
LOC103039262 NA non-coding upstream 678388 845633 ~ 952485 (+)
G61131 NA non-coding downstream 64872 1758838 ~ 1761182 (+)
G61132 NA non-coding downstream 95569 1789535 ~ 1790432 (+)
trnay-gua_3 NA non-coding downstream 122049 1816015 ~ 1816102 (+)
trnay-gua_4 NA non-coding downstream 122437 1816403 ~ 1816490 (+)
trnay-gua_5 NA non-coding downstream 124102 1818068 ~ 1818155 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 149455 1445635 ~ 1481418 (+)
G61014 NA other upstream 581817 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 587557 853526 ~ 1043316 (+)
LOC103045537 NA other upstream 1005864 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 1072293 539518 ~ 558580 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 20851 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 227429 1921395 ~ 1935499 (+)
G61575 NA other downstream 1602580 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4046589 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 4088125 5782091 ~ 5967735 (+)

Expression


Co-expression Network