LOC103042505 (LOC103042505,LOC108425390,LOC108280006)


Basic Information

Item Value
gene id LOC103042505
gene name LOC103042505,LOC108425390,LOC108280006
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5314557 ~ 5336399 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252710.3
CGCCTCTGTACTCACCAGATTTGGCCCTCCTCAGACACCGTACTTGTAGTCCGGAAACACAGCGAGCAGGAGAAAATGAAAGGCGTTTCGTGAATAAATAGACATGGCGCATGGCACAGACTTTACCTCAACTTCCATGAATTGCTGCCTTTAACACTACATTACACCTGAGCAGAAGAGCCTCCATCCAGCCGTAATGAATCCAGAGGAGCCAGAGAAGGAGGTGGACATGTGGTCCTCCCTCCGCTGCCTGGGCTACCTGTCCAGTCTAAACTTGCTGGTGGCAGTATGTCTGGGGATGTATGTGAGGTGGGAACAGACATCTGAGCCCACCATCTTGGTCATCTTCATCTTGGGTCTGTTTGTTTTGGGCATTTCCAGCATCCTGTATTACTACTTCTCCATGGAATGGGCCAGTCTCAGCCTATTTCACCTGTGGTTTGGCTTCCTGCAGGGCCTCTTGTGCTTCGTCACCAACCACTCTCTGGAGATGAACGTGAAGGAACAGGTCACAAACTACCTATTGATCGCTAGCGTGGCAGTGCGGTCATTGTGGGCCCTGGCGGAGCGCCTGTGTGGCAGTGCCAGCTACCGGAGAGTTGTGCTCACCTCAGCTGAGCAGCTTGAGCTGCTGGGATTTGGCATTGCCTGCACCGCTATGGATCTCCACAAGGCAGTAGCAGTCATCGCCCTGCTGGTGGCCTTAGCGGCCATCATCGTAGACCTACGCATGAAGTCCCTCCTAGCCCTTCCCAACTTGATCGGCTTTTCCGTGGTGGCCTCCATCACCTTCTTCCAGGCTCTAGATGTCCAGACTAACCCCTTCGCCTTGGGCTGCTACCTGGGACGCCTCATTTGTGAGCCCCTCCTGGACGTCTACTTCAGCGGGTTGTCTGTGACTGAGCGCTGGATGCCTTTTATGTCGACTGGTCAGCTGTGGAGGAAACTCACTCTCCTCCCGCTGAGTGCTATAGAGCTGATGTTTTTTGTGCTTAGTGCCCAGAAGCTGAGTGACCTCAAGTTCTGGTACCTGGTCATCCCCGGCTTCTGTGTGTTTGGCCTCTTTTGGATGCTGTGTCACGTGGTGTTTCTAGTCACGCTGTGGAGCTTCCACACCAAGCTGAGCGAGTGTCAGAAGGTTCGAGCTACCCAGCGCTCAGACACACGCAGCCTGGACAGGGTCATGGCCTCCAGGGGGATGCGCCATTTCTGCCTCATCTCTGAACGGCTGGTGTTCTTCAGTCTGGTCTCAACTGCTATACTAGGGGCTGTCTCCTGGCAGACATCTAATGCTCTCTTCATGAGCTTGTTCCTGGTGGTGTTACCTTTGGAGTCTCTGGCACACGGACTCTTTCACGAGCTCGGGAACAGCCTGGGAGGGACCTGTGTGGGCTACGCAGTGGTCATTCCTACCACTTACTGCAGTGCTGATGGGCAGCCAGTGCTGCTTCCCCCAGAGCAGGTCCAGGAGATGAACTTGCGCTCGACAGCCACACTGAACGCCGTGCAGAGACTCTTCTCGCACCACCTCATCCAGACATTCGGCTGCGACTACTCCACCAGCGGCCTGAGTCTGGAAGCATTGCAGGCCAAGCTGCGCTCCTTCCTCGAACTGCGCACCGCCGACGGCCCACGCCATGACACCTACCTCATCTACTACAGTGGACACACACTGCCCACTGGAGACTGGGCCCTCATAGGTGGGGATTGTCTGCGTCTGGAGCAGCTCATTGATTTGTGGAGAGAACGGAACGTTGGCTTCTCCTCTCGACTCATCTTGATTCTGGATACGAACCACTCAGTGCCTTGGGTAAAGGCAGCGAGGAGGGTGGAGGGCCTGTATGTAGCAGTTCAGGGAGCAGAGATGAGTCCAGTGGGAGATGCCGAGAGCCAAGACGGGCCTCGTCTAGGAGATTTCACCTCCGAGTGGGTGGAGTATAACTGCGATCCCGACAGCAGCGTGCAGTGGTCAGAGAGAGGTCGGCTTATCGCTGCTACGTACGGCGTGTCTAAGTGCTGGAGTGACTACAGGCTCCACCTGCCCACTGGCAACGACGTAGAAAAGCACTGGAAAACCCATTTCCCCAGGGCCACCTTCCCGCTGGTGGCTGTTGCCAACTGGTGCTGTGGGCTGAACTTGCTGTGGCTGTGCGGAGCCTGCCTACGCTGCTTCAGGAGATTCAAACTGGCCTGGTTTCCTCCCACCATCCTGGACACAGGACAGGGAATCAAACTGGTGCGATCGTAGACACAAGCAAAGACTTGAATGCTGTaatatgctgtatttttttattagcataccgtatttttcgcactataaggcacactatgtttatttaaatgtttatt

Function

NR:

description
transmembrane protein 168-A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252710.3 True 2349 mRNA 0.55 5 5314557 5336399

Neighbor

gene id symbol gene type direction distance location
LOC103023194 dock4b,LOC108425388,LOC108279862,LOC107656358 coding downstream 114945 5000950 ~ 5199612 (-)
LOC107197701 zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059 coding downstream 853032 4447876 ~ 4461525 (-)
LOC103040249 tnnt2e,LOC108425385,LOC108279691,LOC107658902 coding downstream 980545 4318440 ~ 4334012 (-)
LOC111192866 NA coding downstream 1187249 4124790 ~ 4127308 (-)
phyh phyh,LOC107743808 coding downstream 1192801 4116738 ~ 4121756 (-)
LOC103037729 LOC108442307,LOC107676911,LOC107583751 coding upstream 120310 5456709 ~ 5494651 (-)
cmas NA coding upstream 308110 5644509 ~ 5653023 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding upstream 322049 5658448 ~ 5663281 (-)
abcc9 abcc9,LOC108439416 coding upstream 328502 5664901 ~ 5726283 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding upstream 759941 6096340 ~ 6119766 (-)
G62083 NA non-coding downstream 21495 5292855 ~ 5293062 (-)
G62063 NA non-coding downstream 119776 5193560 ~ 5194781 (-)
G62056 NA non-coding downstream 242820 5064638 ~ 5071737 (-)
G62054 NA non-coding downstream 270746 5042509 ~ 5043811 (-)
G62000 NA non-coding downstream 518547 4795715 ~ 4796010 (-)
G62084 NA non-coding upstream 15529 5351928 ~ 5352169 (-)
G62087 NA non-coding upstream 24146 5360545 ~ 5360794 (-)
G62089 NA non-coding upstream 62555 5398954 ~ 5399189 (-)
G62121 NA non-coding upstream 95691 5432090 ~ 5432388 (-)
G62125 NA non-coding upstream 107183 5443582 ~ 5450277 (-)
G61942 NA other downstream 691980 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 888401 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 1468088 3840601 ~ 3846469 (-)
G61676 NA other downstream 1656289 3650845 ~ 3658268 (-)
mdm1 NA other downstream 1765855 3529520 ~ 3548702 (-)
G62377 NA other upstream 1038070 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 1296611 6633010 ~ 6695389 (-)
G62484 NA other upstream 1335211 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 1391475 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 1450943 6787342 ~ 6859670 (-)

Expression


Co-expression Network