arl1 (arl1)


Basic Information

Item Value
gene id arl1
gene name arl1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7549085 ~ 7553250 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252723.3
GCAGATCAGTGGCAGCACGCTGACAAACGTGCCGTGGTTTGACACGTCATTTAAAACTTCGAAGACGGAAGCCGATCTCCTGAGCAGCGGCTgagctacagtacagtacaatggGGGGCTTCTTCTCCAGCTTGTTTTCAGGCCTTTTTGGCACAAGAGAGATGAGAATCCTTATCTTGGGCCTGGATGGCGCTGGAAAAACAACCATACTCTACAGACTGCAAGTTGGAGAAGTTGTTACTACAATTCCCACCATTGGTTTCAACGTTGAGACAGTGACTTATAAGAATCTGAAGTTCCAAGTATGGGATCTTGGTGGACAGACAAGTATCAGACCGTACTGGCGCTGCTACTACTccaacacagatgctgtgatcTACGTTGTGGACAGCAGTGACCGTGATAGGATGGGTATCTCAAAGTCTGAGCTGGTGGCCATGTTGGAGGAGGAAGAGTTGAAAAAGGCCATCCTAGTGGTGTTTGCCAATAAGCAGGATATGGAGCAGGCTATGACTCCCACAGAGGTGGCCAATTCATTAGGCTTGCCTGCACTTAAAGACAGAAAGTGGCAGATTTTCAAAACATCTGCTACCAAAGGAACAGGTCTAGATGAGGCCATGGAATGGTTGGTGGAGTCACTGAAGAGCAGGCAGTAATTGCACAAACGTCACTCTGTAAATACTCTTGTCTTCTGAGCCCCTGTTGAAAGACTTGCTGGGTGCCCTTTGGACCAGTGGCTGCATTCTTCCCTACTGTGTGAAAGCTATATTACTTTCCTGGTCCTTCCAGTAAAGAGGAGACACTGCAGCAATGAAACAGACGGGTGGCAGTATGGCCAAATGAACTGAATGGCAGGCAAGAGGTCCCCAGTTCAAATGGAGACCCTGTACAAAAATTGTTAATGTTCTGGTGATTGTCTGTACTGACGCTCGCTTGACctgtttttctttccctttctgtAAGACATATCCACTACATCAGTGTCTTGTAATTTTAGAGTTCTGCTTCTTGTATTTTCTCCTTTTTAAGGCCTGGTATCAGACTTCACCCCCGCCTTACAGTCGCTTCGTCCCCTTTGAATACTAATCAGCTTTGGTATCTGACTTTGGAATTTTAGTGGTTTGTTATTTAAGATGATTTGTCATTTGTATGCGATGGACTTGTCATTGCGTATTTATAGACAAGCATGTACAGTGGACAGTACCATTGAGATCAGTTTTAACATTGAAATAAAGCTATGGTCAATAAACAAACTTCTTGTACAA

Function

symbol description
arl1 Predicted to enable GTP binding activity; GTPase activity; and enzyme activator activity. Predicted to be involved in several processes, including activation of phospholipase D activity; protein localization to Golgi apparatus; and retrograde transport, endosome to Golgi. Predicted to be located in trans-Golgi network. Predicted to be active in Golgi apparatus. Is expressed in anterior axial hypoblast; axial chorda mesoderm; axis; notochord; and polster. Orthologous to human ARL1 (ADP ribosylation factor like GTPase 1).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 1

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0031584 activation of phospholipase D activity biological_process
GO:0007030 Golgi organization biological_process
GO:0009404 toxin metabolic process biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0034067 protein localization to Golgi apparatus biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
K07942 ARL1; ADP-ribosylation factor-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252723.3 True 1265 mRNA 0.45 6 7549085 7553250

Neighbor

gene id symbol gene type direction distance location
mdfic mdfic coding upstream 378445 7139851 ~ 7170640 (+)
foxp2 foxp2 coding upstream 455002 6953016 ~ 7094083 (+)
LOC103047680 LOC108439417 coding upstream 755218 6782248 ~ 6793867 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding upstream 777724 6757554 ~ 6771361 (+)
zcrb1 zcrb1 coding upstream 845191 6695590 ~ 6703894 (+)
slc5a8 slc5a8 coding downstream 50651 7603901 ~ 7612947 (+)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 coding downstream 67564 7620814 ~ 7631378 (+)
ahcyl2 ahcyl2,LOC106609228,LOC107725924 coding downstream 80143 7633393 ~ 7687547 (+)
LOC103023836 strip2 coding downstream 149862 7703112 ~ 7763123 (+)
smkr1 NA coding downstream 213596 7766846 ~ 7770243 (+)
G62623 NA non-coding upstream 3375 7545388 ~ 7545710 (+)
G62608 NA non-coding upstream 73892 7420400 ~ 7475193 (+)
G62604 NA non-coding upstream 145774 7403091 ~ 7403311 (+)
G62602 NA non-coding upstream 154589 7393703 ~ 7394496 (+)
G62581 NA non-coding upstream 314646 7234124 ~ 7234439 (+)
G62628 utp20,LOC107710084 non-coding downstream 3521 7556771 ~ 7558810 (+)
G62644 utp20,LOC107725898 non-coding downstream 45316 7598566 ~ 7602267 (+)
G62656 lyrm5a,etfrf1,lyrm5,LOC103046475 non-coding downstream 64293 7617543 ~ 7619396 (+)
G62685 LOC108425379,LOC108280009 non-coding downstream 217492 7770742 ~ 7786868 (+)
G62710 NA non-coding downstream 396588 7949838 ~ 7951452 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 693323 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 1555091 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 1581350 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 1783300 5740555 ~ 5765785 (+)
G61575 NA other upstream 4245087 3296546 ~ 3303998 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 848590 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 972968 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 1878249 9431499 ~ 9440564 (+)
G63051 NA other downstream 2093329 9646579 ~ 9650087 (+)
G63432 NA other downstream 4914800 12468050 ~ 12468902 (+)

Expression


Co-expression Network