tmem209 (tmem209,LOC107658886,LOC107725925,LOC107583965)


Basic Information

Item Value
gene id tmem209
gene name tmem209,LOC107658886,LOC107725925,LOC107583965
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7620814 ~ 7631378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252724.3
TGTGCTGAGCATGCGCAGCTGCTTCTGAATTCACGCTGTTGATTTTGGCGCCTGGTTGGAGCTTGAGTTTCTGCTTGTTAGTTTAAAAAtcgtttttttctgttgttaaaTTCTTGTTAAGGGGGTCAGGGAAAGTGTATTTATCCCTGTTGGCTTTGAGAAGAAGTTGtgtatgctttttattttatgtttttcgtTACTTCTTAAGGAGATTACGTTAGCATTGGCTAGCTAACAGCCTGAGGGAGAGCTTAAAACATGACACCGAGCCGAGAAGGCGTGCCCTCTCTCATCGACAAGACGATGAGGTTGAGGAGGGAAGAGCAGGAGCGACAGGTGGTCCTCGCTTGGGCAGTCCTGAACGTGTCTCTTGCTGGAATGATTTACACAGAAATGTCAGGAAAGCTGCTCAGTAGATACTACAACATTACCTACTGGCCGATCTGGTACATTGAGCTGGCCCTAGCTTCCCTCTTCAGCCTTAATGCAGTCTTTGATTTTTGGAAATACTTCAAGTACACCATGGCCCCTTCAACAATTGCTATCTCTCCTGAGCAACATCGTCTTCTTGGCCTGCGCAACTCTGGAATTCATGCCTCTCCTCCCCAGAAGCCAGAGAAGAAGGAGATTCCAGTGTCGCCCCAGTCCTCTCCTCTGCAGGGACAGAATGTCCTGAGTTTTAGTCCTGCTCGGCCTCCCAGCACCAGCCCAAAGTTCTCTCCCAGCTGTGTGTCTGGGTTCAGCCCACCTCTGAGCAACCCATCATCACCAGGTGGTGGAGGACCTTTTTCTCCGTCTGTGGCCTTTGGCAAAGTGTTGAACTACAgtccatccacaagctcctcaCCTTACCCTAGTAACCTTGGCCCAGCAGAGGGCACCAGCTTGCGGGCTCGCTACCGTACATCCCCATCTGTATTCAGTTCTCCAGGAGGAAAGGAAGATTACATGGATGACCATAAGAGTCTGGAGAAGTTTCTTCGCTCTGAGGAGGAGAAGAGCCACCGAAGTCAGCTTGGGAGTCCAGAATCAGCCTCTCCATCACACAGTCCAACGTTCTGGAACTACAATCGTTCTGTGGGAGACTATTCCCAGAGCCTAAGAAAATTCCAGTACCAGCCGGCCTGTCGCTCCCAGGCTCCCTCTGCCCACAAAGATGAAACTGAGCTGGGCTCCAAACAAGCAGCTGAGGAGGTCTGGGCACGCATCACAACCAGTCGACTTGTTACTGACAGCATCGACAGCTGGactgccaagctaagaaatTGGATAAATGACACTATTCTGGTGCATCTGGTAAAAGAGATTGATTCCATCAATAGCCAGCTGAGGAGGATGGGCTGCCCTGAGCTCCAGATCGGAGAGGCTAGCATCAGCAGTCTGAAACAGGCCGCTGTCGTCAAAGCTTGTGCCATACCCACCCTCAACGCCATAGTGCAGTACCTGGACATCACGCCCAACCAGGAGTATCTGGTGGAGAGGATCAAGGAACTGGCCCACAGCGGCTGCATGAGCTCCTTCCGCTGGAATGGTGGTGGGAATCTGAAGAACAGGAAGTGGGACACAGACCTTCCAACTGATTCTGCTATCCTTATGCATATTCTGTGCACATACCTGGACTCCAGACTTCCTCCGCACCCTAAGTACCCAGATGGGAAAACCTTCACATCACAGCATTTTATTCAGACACCACACAAACCAGaTCTTTCCAACGAGAACCTCTTCTGCATTCACCAAAGCAGCACCAACCCACCCCACTATCAGCTTATCTATCAGGGCCACATCTACAGCCTGCCTAAGGGAAGAAATAACTTGTTCCACACGGTCCTCATGTTCCTTTTCATCATCAAAACCAAGGAGTCGGGGATGCTGGGGAGAGTCAATCTGGGCCTTTCTGGAGTGAATGTTCTTTGGATATTTGGGAACTAATCTCATCACAAGTTACAGCTGAAGTAACTGGAACACTGACGGGGTCACTTGAAGAGCAATATGTTGCACAAGTCTGCACAAgcctttttttactattattatttacttgtAGAATTTGTAGTGACGTTGCATGCTTTAAGGGGACATGCACAGTGCTTTGGTTCTTTAACCAGGAACTTTATCCCAGCTGTAGCCCAGCGTGAGACACTGAATAATTTTAAGTTCTGGGAAGAATGTGGTTTTAAATAGCAACACTCTTTACAGAAAACTAGCAGGAGCTTAGATTACAGAGTGGGTCGACAGAGAAACAGTTCTGTTCTGCCTTTGTATATAATTCTGCATGTTGCAGAACTTTCTTTCGAATGTGTGTAAAgtggtgtattttttatatataaatagggGAATGTGAATTGTTTACTCAGGCTTTGGCTTTAGCTTGGTGTGCATTGTATATGCTGTGctgcatttttaatataaaggtGCTTTAGACGTTTCATATGCATATGCTattgaagaaccacttttggatTTATAAATATAGATCTAGGAGTTTTTACATTAAGTTCTTTAGATCTTTTAAGGGAACATGAAAAGTGGTTCTTCTCTGGCATTGCTCACAGTGCCATTAAAACATTGGTTACCAATCCTGCTCTTGGAGATCAACTGTCTGAAGTGACTGTTCACAAATTATTTGAATGTGAACAGATTGGATTTGTGTGTCATTTTTGACACTCTTGTTGAATCCCTGCACTTCTGTCGCTCTTGATATGATGAGCTTGTTGTGTATCGTGTTGTAAGTTAAGCAAAATACACTTTGGAATCTGATTTAAGTGTCGAGAGCATCCAGACTCAGATGcatctgtacaaatctgattGTAATCAGGTTTACGAAAGTTAGATTTCATGTGATTTTTAGCAGTCTAGACTATCAAAAGAATTTGGATACAGTCTAGATATGCGAAAGATTGGATTTGAACTTGCAGTTTGAACATAGCCCCACACATATCCTATATAACTATTCGGGCTCTCCTGAGGCTGTAATTTAGAGTGATTGTGTGGAACTGGTTAGTTTAAGGTTGGACCTGAACTCTCCAGGAGAAAAGTTGGTGACCCCTGCATCAGACaagcaattatttttttcagacactttccgtttttaatatttttgctcatattttttacttaaaccTCATATTAAAAAGTGGAACCACTTGACCCCATTCTGAATGATTgcaccatcttcatcagctaAAGCTCTTTCCAGAGCAAGCAGTCAGCCCTAAACACTAGCCTGGAGATTTTGTTCCCAAAGGAGGCAAGTGGTTTGTTTACAAAAGTACCCAAGTAGCTAACCATAGTTTTCCACAGACAAGGGCTGTTGGAGTgggtaattattttaataacaccAAAGCTTCTGTTGTTGTGCATGTGATTGTGGTTTGCAGCAGcgatgtactgtatgttttactTTGTGTAATTTTGCACATGTGCAGTAGATAAGACCtgtagttactttttaaagcagTGCCAAATAATACATTGTGATGCTAAAAGCTCTTTACCATTTACCTCTTTAGGTTAAGGGAGTAAACATCTTCAAATGTTTGTCACAGTCTCTTTCACAGCTGGATTGTTACATGGCAGAGCACTGTTTGCTGTTCCTCACTTTAGCAAAAGGGCTTTTGTAAACACTTATAGGGCAGTGTAcgtcaattttttttccaacatcACCTGCTAAAAAAACCTATTTGTATCTTCAGCTCTTTAGGAAAAGCACAGCAACATTTTGATCTGAAATGAACTGtaataaattaaacttttcACATTGTCCAATA

Function

symbol description
tmem209 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM209 (transmembrane protein 209).

NR:

description
PREDICTED: transmembrane protein 209

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252724.3 True 3764 mRNA 0.44 15 7620814 7631378

Neighbor

gene id symbol gene type direction distance location
slc5a8 slc5a8 coding upstream 7867 7603901 ~ 7612947 (+)
arl1 arl1 coding upstream 67564 7549085 ~ 7553250 (+)
mdfic mdfic coding upstream 450174 7139851 ~ 7170640 (+)
foxp2 foxp2 coding upstream 526731 6953016 ~ 7094083 (+)
LOC103047680 LOC108439417 coding upstream 826947 6782248 ~ 6793867 (+)
ahcyl2 ahcyl2,LOC106609228,LOC107725924 coding downstream 2015 7633393 ~ 7687547 (+)
LOC103023836 strip2 coding downstream 71734 7703112 ~ 7763123 (+)
smkr1 NA coding downstream 135468 7766846 ~ 7770243 (+)
LOC103021322 LOC108425378,LOC108279462 coding downstream 188977 7820355 ~ 7921224 (+)
ckap4 NA coding downstream 797174 8428552 ~ 8431990 (+)
G62656 lyrm5a,etfrf1,lyrm5,LOC103046475 non-coding upstream 1418 7617543 ~ 7619396 (+)
G62644 utp20,LOC107725898 non-coding upstream 18547 7598566 ~ 7602267 (+)
G62628 utp20,LOC107710084 non-coding upstream 62004 7556771 ~ 7558810 (+)
G62623 NA non-coding upstream 75104 7545388 ~ 7545710 (+)
G62608 NA non-coding upstream 145621 7420400 ~ 7475193 (+)
G62685 LOC108425379,LOC108280009 non-coding downstream 139364 7770742 ~ 7786868 (+)
G62710 NA non-coding downstream 318460 7949838 ~ 7951452 (+)
LOC107197604 NA non-coding downstream 739385 8370763 ~ 8374695 (+)
G62807 NA non-coding downstream 802358 8433736 ~ 8434382 (+)
G62810 arfgap3 non-coding downstream 820114 8451492 ~ 8455911 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 765052 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 1626820 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 1653079 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 1855029 5740555 ~ 5765785 (+)
G61575 NA other upstream 4316816 3296546 ~ 3303998 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 770462 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 894840 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 1800121 9431499 ~ 9440564 (+)
G63051 NA other downstream 2015201 9646579 ~ 9650087 (+)
G63432 NA other downstream 4836672 12468050 ~ 12468902 (+)

Expression


Co-expression Network