slc5a8 (slc5a8)


Basic Information

Item Value
gene id slc5a8
gene name slc5a8
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7603901 ~ 7612947 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252735.3
TTCTGACTCTCAGTAAAACAAAGAAGTCTCAGAGGTCTCCACTGGCTGCTCCTTTACCTGACTAGAGTTTCGGTCCATCCttattttttctcaattttagtTTGTAAAACATTTTGAGGAAACAACCTAGAGACAACAATGAAGAACCTGGAGAGCCCAACACCTCCAGCATCCTTTACTCTATGGGACTATGTGGTTTTTACTCTGATGCTGGTCATCTCAGCAGCTGTTGGGTTGTACTATGGCTTTGCCAAAGGAGGACAACACAGCTCCAGGGATTTTCTAGTTGGTGGTCGCAGTATGACAGCAGTGCCCGTGGCTCTGAGCCTGACTGCCAGTTTCATGTCAGCCATCACGGTGCTGGCCACCCCAGTAGAAGTGTACTGTTACGGGCTCAGCTTCATCCTCACCTGCCTTTCATTTATTCCCATGGTGTGGATCAGCTCAGAGATCTTTCTGCCAATCTTCTACAGACTGGGAATTACCAGTACTTATGAGTATCTGGAAATGCGGTTTAACAAAGCCACTCGGCTGTTTGGAACAGTGTTATTTATCATACAAACATTACTTTACACTGGAATGGTTATCTACGCTCCAGCACTGGCTTTAAACCAAGTCACTGGCTTAGATCTCTGGGGAGCTGTGATATCGACTGGAGTGGTCTGTACCTTCTACTGCACCTTGGGTGGTCTGAAGGCTGTGGTGTGGACAGACGTGTTCCAGGTGCTCATCATGCTGACTGGGTTCTTGGCTGTCATCATTCAGTCTGTGCTGGTGCAGGGCGGAGTCTCCGTCATCTTCAGCGATGCTGCCCAGGGTGGCAGAATCAACATATTGGACTTTGATCCTAACCCTCTGAGGAGGCACACTTTCTGGACCATCCTAATCGGTGGTACATTTGTCTGGACCAGTACATATGGTATTAACCAAGCTCAGGTGCAACGATATGTGTCTTGCAAGTCCCTCTTCCATGCCAAAATGTCTCTGTATGTGAACTTGGTGTCTCTCTGGGCTATTAATctttgttcagtgttttgtggATTGTGTTTGTACTCTGTTTATAAGAATTGTGATCCATGGACAGCTAATAAGGTGTCTGCTCAAGACCAGctaaTGCCATATCTGGTTCTGGATATCTTAAGGGATCACCCTGGACTTCCTGGCTTGTTTGTAGCAGCAGCATACAGTGGCACCCTGAGCACAGTGtcctccagtgtgaacgcattAGCCACAGTGACGGCTACAGACCTGATAAGTCCATACTTCAGCTTGTCGGAGCAGCAGCTCTCATGGGTATCGAAAGGCCTGAacattttctatGGAGCTATGTGCATTGGGATGGCTGGTGTTGCATCTCTGATGGGAGGGCTGCTACAGGCAGCGATCAGCATTGTTGGCACGATTGGTGGACCTCTACTTGGCCTCTTCACTTTGGGAATCCTGTTCCCCTTTGTTAACTCAAAGGGAGGACTGGCTGGTCTGGTCACTGGGCTATCTGTATCCTTCTGGGTGTGTATTGGGTCTCAGATCTATCGACCCCTACCTGAGAGTACCAGACCCCTCGCTCTGGAAACACATGGCTGCAACTTCACCATGGCTGAGAATGTCCTACAGAACTGGACCTACTCTACACAGACTGAACACATCACCTCTGCCCAGCAGCACAACACTCAGGACAGGCCTTGGCTGGCTGATAGTTGGTACTCCTTGTCCTACCTGTATTTCTGTCCTGTGGGGACTTTAGTTGCCATAGCTGTGGGGTTGATTGTAAGTTTGGTCTCAGGGGATAAAGCGCTAAAGCTGGAAGCAGGTCTGACAGTAATGAAGGAGGATTTAACTTGCTACAAGCTTTATAAGATACTAAAGCAAAAGgCCATAGGAAATTCATTTAAACTTGACCTGGCTGGGGGGAAGGAGAAGAAATCTGGTGAAACTAACTTTGCCTTTCGTGATATTGAGCTTGATATCACACAAATGCAGTCTCAGAAATCTCTTACATAAGATGATTTGCTCATTTTTCTTCATTACATTTATCATCGCACATTTTCTTTTATGAATGCACCATACCATCTATGTTagtaataacaaaaacaaccaGACAGGATATTGTgacaaaatacacatttattattcagCGCCTCTCTGGACAAACAGAATTAACTATTAAAGCTTACTGAGCTTACTGGAGGGGAAAAGACGCAGGTTCTCCACTTAGCCACACTGTGCTATTTCTACATTAAACTTctcaacacacactgctgacatTCCTCACttataataatcttaataaatgctgaatgaattaa

Function

symbol description
slc5a8 Predicted to enable organic acid:sodium symporter activity. Predicted to be involved in propanoate transport; short-chain fatty acid import; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A8 (solute carrier family 5 member 8).

NR:

description
PREDICTED: sodium-coupled monocarboxylate transporter 1

GO: NA

KEGG:

id description
K14388 SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252735.3 True 2306 mRNA 0.46 15 7603901 7612947

Neighbor

gene id symbol gene type direction distance location
arl1 arl1 coding upstream 50651 7549085 ~ 7553250 (+)
mdfic mdfic coding upstream 433261 7139851 ~ 7170640 (+)
foxp2 foxp2 coding upstream 509818 6953016 ~ 7094083 (+)
LOC103047680 LOC108439417 coding upstream 810034 6782248 ~ 6793867 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding upstream 832540 6757554 ~ 6771361 (+)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 coding downstream 7867 7620814 ~ 7631378 (+)
ahcyl2 ahcyl2,LOC106609228,LOC107725924 coding downstream 20446 7633393 ~ 7687547 (+)
LOC103023836 strip2 coding downstream 90165 7703112 ~ 7763123 (+)
smkr1 NA coding downstream 153899 7766846 ~ 7770243 (+)
LOC103021322 LOC108425378,LOC108279462 coding downstream 207408 7820355 ~ 7921224 (+)
G62644 utp20,LOC107725898 non-coding upstream 1634 7598566 ~ 7602267 (+)
G62628 utp20,LOC107710084 non-coding upstream 45091 7556771 ~ 7558810 (+)
G62623 NA non-coding upstream 58191 7545388 ~ 7545710 (+)
G62608 NA non-coding upstream 128708 7420400 ~ 7475193 (+)
G62604 NA non-coding upstream 200590 7403091 ~ 7403311 (+)
G62656 lyrm5a,etfrf1,lyrm5,LOC103046475 non-coding downstream 4596 7617543 ~ 7619396 (+)
G62685 LOC108425379,LOC108280009 non-coding downstream 157795 7770742 ~ 7786868 (+)
G62710 NA non-coding downstream 336891 7949838 ~ 7951452 (+)
LOC107197604 NA non-coding downstream 757816 8370763 ~ 8374695 (+)
G62807 NA non-coding downstream 820789 8433736 ~ 8434382 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 748139 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 1609907 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 1636166 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 1838116 5740555 ~ 5765785 (+)
G61575 NA other upstream 4299903 3296546 ~ 3303998 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 788893 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 913271 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 1818552 9431499 ~ 9440564 (+)
G63051 NA other downstream 2033632 9646579 ~ 9650087 (+)
G63432 NA other downstream 4855103 12468050 ~ 12468902 (+)

Expression


Co-expression Network