LOC103025638 (mansc1)


Basic Information

Item Value
gene id LOC103025638
gene name mansc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23004755 ~ 23012773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256033.3
ACCGTCCTACCAGTCGCGCGGAGCACACAAAGAGACTGAAGTGGGTCAGAGTGGAGGAACGCGAGCGTCGGCACTGCGGTCGGTGCCGTTTAATACCGCGCGGTTTGGACCGTTTATTTCCGCGCTCTCGCTTCGGCCCCGTGTTCTAGTCGCGTTTCCCGCCCCCGCGTCCTGTGGCGAGCTGATCGGAGCAAAGGTCTATCCAGCGGTGCTCCGCGCGGAGCGCAGCGGCGTCGAGCGGACAAAAGAGTGTCGGGTCTGAGAAGCTCCTGAGGAGCGAGACTCCTCCAGCCCGTTCACTCCGCGCGAGCCCGTGACTCCGAGGACACCATCTTACAATGCCTCTGCCCGCACGGGTCTTCCAGCAGCGCGCGGGAGAAGAACAGCACTGTGTGTTGAGATGGACCCCGACCCCTCAGCACGACTCATCTGCATAACCCGCCCGCGCGCGCTCGGCAGGCGACGACGTTGACCGGGGTCGCCCGGACGCTTTCGGTGCACAGACCGTGCTGCCACCTGAGAACCTTCTCGAAATACCAAGCCCTAAAGCCATGGCGCTGGCCCAGCAAGACTCCTACAAGGCAGCTTTGCTTCTCCTGATGGCTCTGCTTCTTCTCAGAGCAAGTGTTTCTGCCTTGGGCTCCAAAGGGAAGCTGTGTTATTCCAGGCAACACAGAGATGCCATTGTAAATGTACGCGTAGCAGTGGAAAGCAATGGGGCTGTAACGAGTACCAGGGTAAAGCAAGCAGAGAAAGACTGTATCCTGGCCTGCTGCTCAGAAGAGGTGGCACCAGGTATAAAGTGTAACATGGTTGTTTATAAGCCGTCAAGCCAACCAGGCAATGACAACTGCTACCTGTTTCATTGTGAGACTGAGCAAGACTGCCCTCTAATGTCTGCCAAGCCTGGGATCAACACCTATGATATTTCCAAAGACATGATCCATCCCACTGCAAAAGGAAACGGCAGAGCGACTGTCATGCCCTTCATTCACGCCACTCCAGGCAAACAACTGATCTCTACTCACTCCACCTCAACGACCATGAAACCAACAACCACAGCACCAAGGATCACACCTCCAACTACGACAACAACCATACCCCCGTCCACCACCAGCACTACACAACCCACTACAACCACCACCGCAAGTACAACCTTACCTACGATCACAACCTTACCCACAACCACCACCACTCAGTCTACAACACTCTCAACCAcaaccaccactaccaccaccaccactaccaccagcaCTCAACCTCCTACTGACCCTTCCATCATTCTGGTAACTATGCCTGTTGTTACCATGCCTATCACCAATGCTACCACAACAGTTGccacaacaacagcaacagctACAACACAGATCACCAGTACGACCACCAAAATCCCATCCACAACATCACCAACTACCAGTCCAATTACTCAGCCACCACAACCACCTCAACCACCCCAGCCACCTGCAAAACCAAACAGGCCTTTCAAGAAGCCATTCAAACCACCAAAAAAACCCACCACCAAACCTCCCACCACCACAACCACCACGCAAAAGCCAACAATCACTTCAACAACTCCTCCTCCGccaactactacaactattacaaccaccaccactactacaAGTACTACAACAACTACAACTGCTTGCACAGCTACAACTGAAAGGACAACTGTAGTGTTTGTAGAGATGAATGACCTAAAGAATGGGGCTTTAGAGCCTGATAGCCTGATGCCTCCGGCAGAGGGCTCTGCCCCAGACAAGGCTAAGGGGCTACAGATGACCTGGAAAAACGGtctggttgctgtggtggtggtcatgctggtctgCTTCACTTTGGTCCTGGCCATTGTGGGCCGCAAAGCCATGGAATCCTTTGACAGGAGACACTACACAAGACTGGAGCTCAACGACCTGCACTACGAAATCTGACTTCTGACCAAATTACCCATAACAGAAAAGACAATCCTGTTgaattttaaagtgtatttttctgTCCTCTAACTGGAACaagaaaatactgtattttgatATTTAGGGAATTTTTGGCTTAGGAAAATGAATCTGTTCCCCCACACAAGATGTAACTGTAAGATACTGAGGACTAAATTGGAGACTGAGAAAAGATGCAGGGATTAGTGCTGGGGGGTTTGGGGGGTGTTTGAAAAGCAATACAATGAACTCAGGAAGGctcaacatttaaaataaagcactCTCATGCTGATGAACATCCATTGCTATGGCAAAGTAGTGTTGAGGCCCCACACAAAGGTTGTTAACATTTCCATGGTGCAAAAACAGGCATTCAACATTTAAGCTGTGATAGGAAAGCTGTGCATAACCACTTCTTTCTGAGGCTTCAGTTCCCATTTTTGTCTTTAGTTTGATTAAGATACACCCACGGCAGGAGCGGTACATGAATAATTTAGGTGAGCAAATCAAACAATTAGTTAAAAGTTTAATTGGGTAGCCACAGATAAAATATtatacaacaaaataaagactagttgttgttttttttggatgtgCTAAaatcaaattgataaaaatagTTTGCCATAGTCTTTAGTACCAGGCTGGAAAAGAGTGCTGTTCTAACCATACTTGGCGTGTCTGGTTTCTTTGCCTTTCTTTTCACTTTGATAAACagctgtatttacatttaatctCACCAATACACAGGAGATTCACTGACTGATGCAAATAATTACATTGTGGCGCACTTCTACTTTGTCCTACACACATTTTGAATAAATACTAAATCTTAAGGGTACGTTACACTGGATGTGCACTATTTTCATATAAAGAACTAGATGAATAATTAACTAAATATACAGTGTGCGTGTTTAGAGCGGGTGCCGGTTTTAGACACTGAGGTGGTCTGAGGCTGAGCATTGTAACAAGCTTAAGATAAGtgattgtatttttgttttttcctaatattattattggatGTAATGTGACTGTTGACCACAAGGTGGAAGCAGTCCCTCACCACAGTTCTACACTATCCTGGCATGCAGCACAGCCACCTCTTACTACACAGCTTGGTTTAAGTTGCACAAATGCTTTCTTTTCACAATtgcttttaaattttatatcatTCTACATTGATAATAATGGTTTGGTCTTGTTTCTGTGACTTGTTGCCTATTTCAAGGAAATcaattaatgtactttttttctcttgcaagaaataaaatgtctttgaataacacata
>XM_015607538.2
TTTCAAAGTCCAATTCCGAGCTCTTCACTTACAGCAAGGATCTTCACCTACCTACTCTTCATGGATAAGCAGCTCCTAGCATAAGGACCGTGCTGCCACCTGAGAACCTTCTCGAAATACCAAGCCCTAAAGCCATGGCGCTGGCCCAGCAAGACTCCTACAAGGCAGCTTTGCTTCTCCTGATGGCTCTGCTTCTTCTCAGAGCAAGTGTTTCTGCCTTGGGCTCCAAAGGGAAGCTGTGTTATTCCAGGCAACACAGAGATGCCATTGTAAATGTACGCGTAGCAGTGGAAAGCAATGGGGCTGTAACGAGTACCAGGGTAAAGCAAGCAGAGAAAGACTGTATCCTGGCCTGCTGCTCAGAAGAGGTGGCACCAGGTATAAAGTGTAACATGGTTGTTTATAAGCCGTCAAGCCAACCAGGCAATGACAACTGCTACCTGTTTCATTGTGAGACTGAGCAAGACTGCCCTCTAATGTCTGCCAAGCCTGGGATCAACACCTATGATATTTCCAAAGACATGATCCATCCCACTGCAAAAGGAAACGGCAGAGCGACTGTCATGCCCTTCATTCACGCCACTCCAGGCAAACAACTGATCTCTACTCACTCCACCTCAACGACCATGAAACCAACAACCACAGCACCAAGGATCACACCTCCAACTACGACAACAACCATACCCCCGTCCACCACCAGCACTACACAACCCACTACAACCACCACCGCAAGTACAACCTTACCTACGATCACAACCTTACCCACAACCACCACCACTCAGTCTACAACACTCTCAACCAcaaccaccactaccaccaccaccactaccaccagcaCTCAACCTCCTACTGACCCTTCCATCATTCTGGTAACTATGCCTGTTGTTACCATGCCTATCACCAATGCTACCACAACAGTTGccacaacaacagcaacagctACAACACAGATCACCAGTACGACCACCAAAATCCCATCCACAACATCACCAACTACCAGTCCAATTACTCAGCCACCACAACCACCTCAACCACCCCAGCCACCTGCAAAACCAAACAGGCCTTTCAAGAAGCCATTCAAACCACCAAAAAAACCCACCACCAAACCTCCCACCACCACAACCACCACGCAAAAGCCAACAATCACTTCAACAACTCCTCCTCCGccaactactacaactattacaaccaccaccactactacaAGTACTACAACAACTACAACTGCTTGCACAGCTACAACTGAAAGGACAACTGTAGTGTTTGTAGAGATGAATGACCTAAAGAATGGGGCTTTAGAGCCTGATAGCCTGATGCCTCCGGCAGAGGGCTCTGCCCCAGACAAGGCTAAGGGGCTACAGATGACCTGGAAAAACGGtctggttgctgtggtggtggtcatgctggtctgCTTCACTTTGGTCCTGGCCATTGTGGGCCGCAAAGCCATGGAATCCTTTGACAGGAGACACTACACAAGACTGGAGCTCAACGACCTGCACTACGAAATCTGACTTCTGACCAAATTACCCATAACAGAAAAGACAATCCTGTTgaattttaaagtgtatttttctgTCCTCTAACTGGAACaagaaaatactgtattttgatATTTAGGGAATTTTTGGCTTAGGAAAATGAATCTGTTCCCCCACACAAGATGTAACTGTAAGATACTGAGGACTAAATTGGAGACTGAGAAAAGATGCAGGGATTAGTGCTGGGGGGTTTGGGGGGTGTTTGAAAAGCAATACAATGAACTCAGGAAGGctcaacatttaaaataaagcactCTCATGCTGATGAACATCCATTGCTATGGCAAAGTAGTGTTGAGGCCCCACACAAAGGTTGTTAACATTTCCATGGTGCAAAAACAGGCATTCAACATTTAAGCTGTGATAGGAAAGCTGTGCATAACCACTTCTTTCTGAGGCTTCAGTTCCCATTTTTGTCTTTAGTTTGATTAAGATACACCCACGGCAGGAGCGGTACATGAATAATTTAGGTGAGCAAATCAAACAATTAGTTAAAAGTTTAATTGGGTAGCCACAGATAAAATATtatacaacaaaataaagactagttgttgttttttttggatgtgCTAAaatcaaattgataaaaatagTTTGCCATAGTCTTTAGTACCAGGCTGGAAAAGAGTGCTGTTCTAACCATACTTGGCGTGTCTGGTTTCTTTGCCTTTCTTTTCACTTTGATAAACagctgtatttacatttaatctCACCAATACACAGGAGATTCACTGACTGATGCAAATAATTACATTGTGGCGCACTTCTACTTTGTCCTACACACATTTTGAATAAATACTAAATCTTAAGGGTACGTTACACTGGATGTGCACTATTTTCATATAAAGAACTAGATGAATAATTAACTAAATATACAGTGTGCGTGTTTAGAGCGGGTGCCGGTTTTAGACACTGAGGTGGTCTGAGGCTGAGCATTGTAACAAGCTTAAGATAAGtgattgtatttttgttttttcctaatattattattggatGTAATGTGACTGTTGACCACAAGGTGGAAGCAGTCCCTCACCACAGTTCTACACTATCCTGGCATGCAGCACAGCCACCTCTTACTACACAGCTTGGTTTAAGTTGCACAAATGCTTTCTTTTCACAATtgcttttaaattttatatcatTCTACATTGATAATAATGGTTTGGTCTTGTTTCTGTGACTTGTTGCCTATTTCAAGGAAATcaattaatgtactttttttctcttgcaagaaataaaatgtctttgaataacacata
>XM_022671535.1
aagacagacacaggagcgACTGTAGCGTTAGCTCGAGCGGAGCTACCCGAGTTAGCAGAGAAAGCGCAGAGAACCGGGTTTTAACCAACAAAAGAAGATGTCTGCTGGCTTTTAGGGCCGGATAAAAACACAACGTTTCATATTTCATTAAGATTGCATCATGGTCTGGTCGCAGCTCGGGGTGCCCTTTTAAATGATGCTCGGTATCCTAGCGACGCTTCAGCTCAGCTTCAGCACCAGAAGGGAGGCAGGCCTCACTTATAGCAGGGCTCCCCAGCCAGCTGGAGCAGTCTGTGTGTTCTCTACCCAAAAATTTTGATGTTGTTTCTGCACCATGAAGTGCACCATATCAGgcaattacacaatttttctGTTACAGACTACATGGGCTCTACATTGCCGTCCAGAACTATTAGCATCATCGCTCAGAATCAGCAAACAAAAGATGTTTAGTGAGATAAAATCAGACAAAGACAAAGCATAACAGTAATCTACTGTAAGAACACACAAAAGGATGCAATTCATTGTCTTTTCAAGGACCGTGCTGCCACCTGAGAACCTTCTCGAAATACCAAGCCCTAAAGCCATGGCGCTGGCCCAGCAAGACTCCTACAAGGCAGCTTTGCTTCTCCTGATGGCTCTGCTTCTTCTCAGAGCAAGTGTTTCTGCCTTGGGCTCCAAAGGGAAGCTGTGTTATTCCAGGCAACACAGAGATGCCATTGTAAATGTACGCGTAGCAGTGGAAAGCAATGGGGCTGTAACGAGTACCAGGGTAAAGCAAGCAGAGAAAGACTGTATCCTGGCCTGCTGCTCAGAAGAGGTGGCACCAGGTATAAAGTGTAACATGGTTGTTTATAAGCCGTCAAGCCAACCAGGCAATGACAACTGCTACCTGTTTCATTGTGAGACTGAGCAAGACTGCCCTCTAATGTCTGCCAAGCCTGGGATCAACACCTATGATATTTCCAAAGACATGATCCATCCCACTGCAAAAGGAAACGGCAGAGCGACTGTCATGCCCTTCATTCACGCCACTCCAGGCAAACAACTGATCTCTACTCACTCCACCTCAACGACCATGAAACCAACAACCACAGCACCAAGGATCACACCTCCAACTACGACAACAACCATACCCCCGTCCACCACCAGCACTACACAACCCACTACAACCACCACCGCAAGTACAACCTTACCTACGATCACAACCTTACCCACAACCACCACCACTCAGTCTACAACACTCTCAACCAcaaccaccactaccaccaccaccactaccaccagcaCTCAACCTCCTACTGACCCTTCCATCATTCTGGTAACTATGCCTGTTGTTACCATGCCTATCACCAATGCTACCACAACAGTTGccacaacaacagcaacagctACAACACAGATCACCAGTACGACCACCAAAATCCCATCCACAACATCACCAACTACCAGTCCAATTACTCAGCCACCACAACCACCTCAACCACCCCAGCCACCTGCAAAACCAAACAGGCCTTTCAAGAAGCCATTCAAACCACCAAAAAAACCCACCACCAAACCTCCCACCACCACAACCACCACGCAAAAGCCAACAATCACTTCAACAACTCCTCCTCCGccaactactacaactattacaaccaccaccactactacaAGTACTACAACAACTACAACTGCTTGCACAGCTACAACTGAAAGGACAACTGTAGTGTTTGTAGAGATGAATGACCTAAAGAATGGGGCTTTAGAGCCTGATAGCCTGATGCCTCCGGCAGAGGGCTCTGCCCCAGACAAGGCTAAGGGGCTACAGATGACCTGGAAAAACGGtctggttgctgtggtggtggtcatgctggtctgCTTCACTTTGGTCCTGGCCATTGTGGGCCGCAAAGCCATGGAATCCTTTGACAGGAGACACTACACAAGACTGGAGCTCAACGACCTGCACTACGAAATCTGACTTCTGACCAAATTACCCATAACAGAAAAGACAATCCTGTTgaattttaaagtgtatttttctgTCCTCTAACTGGAACaagaaaatactgtattttgatATTTAGGGAATTTTTGGCTTAGGAAAATGAATCTGTTCCCCCACACAAGATGTAACTGTAAGATACTGAGGACTAAATTGGAGACTGAGAAAAGATGCAGGGATTAGTGCTGGGGGGTTTGGGGGGTGTTTGAAAAGCAATACAATGAACTCAGGAAGGctcaacatttaaaataaagcactCTCATGCTGATGAACATCCATTGCTATGGCAAAGTAGTGTTGAGGCCCCACACAAAGGTTGTTAACATTTCCATGGTGCAAAAACAGGCATTCAACATTTAAGCTGTGATAGGAAAGCTGTGCATAACCACTTCTTTCTGAGGCTTCAGTTCCCATTTTTGTCTTTAGTTTGATTAAGATACACCCACGGCAGGAGCGGTACATGAATAATTTAGGTGAGCAAATCAAACAATTAGTTAAAAGTTTAATTGGGTAGCCACAGATAAAATATtatacaacaaaataaagactagttgttgttttttttggatgtgCTAAaatcaaattgataaaaatagTTTGCCATAGTCTTTAGTACCAGGCTGGAAAAGAGTGCTGTTCTAACCATACTTGGCGTGTCTGGTTTCTTTGCCTTTCTTTTCACTTTGATAAACagctgtatttacatttaatctCACCAATACACAGGAGATTCACTGACTGATGCAAATAATTACATTGTGGCGCACTTCTACTTTGTCCTACACACATTTTGAATAAATACTAAATCTTAAGGGTACGTTACACTGGATGTGCACTATTTTCATATAAAGAACTAGATGAATAATTAACTAAATATACAGTGTGCGTGTTTAGAGCGGGTGCCGGTTTTAGACACTGAGGTGGTCTGAGGCTGAGCATTGTAACAAGCTTAAGATAAGtgattgtatttttgttttttcctaatattattattggatGTAATGTGACTGTTGACCACAAGGTGGAAGCAGTCCCTCACCACAGTTCTACACTATCCTGGCATGCAGCACAGCCACCTCTTACTACACAGCTTGGTTTAAGTTGCACAAATGCTTTCTTTTCACAATtgcttttaaattttatatcatTCTACATTGATAATAATGGTTTGGTCTTGTTTCTGTGACTTGTTGCCTATTTCAAGGAAATcaattaatgtactttttttctcttgcaagaaataaaatgtctttgaataacacata

Function

symbol description
mansc1 Is expressed in female organism. Orthologous to human MANSC1 (MANSC domain containing 1).

NR:

description
PREDICTED: MANSC domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256033.3 False 3220 mRNA 0.47 4 23006933 23012773
XM_015607538.2 False 2803 mRNA 0.43 4 23004755 23012773
XM_022671535.1 True 3255 mRNA 0.44 4 23007458 23012773

Neighbor

gene id symbol gene type direction distance location
bcap29 bcap29 coding upstream 707076 22284747 ~ 22297679 (+)
dus4l dus4l coding upstream 726733 22274641 ~ 22278022 (+)
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding upstream 760851 22181203 ~ 22243904 (+)
LOC103042836 NA coding upstream 842905 22104840 ~ 22161850 (+)
ptprr ptprr coding upstream 904119 21994110 ~ 22100636 (+)
lrp6 lrp6,LOC100705426 coding downstream 7611 23020384 ~ 23085044 (+)
rerg rerg,LOC107662225,LOC107669035 coding downstream 438790 23451563 ~ 23548257 (+)
etv6 etv6 coding downstream 903533 23916306 ~ 23953720 (+)
LOC103023565 fam19a2,LOC103023565,LOC108411383,LOC108248567,LOC106529719,LOC103364248 coding downstream 1013688 24026461 ~ 24117713 (+)
lrig3 lrig3,LOC104942525 coding downstream 1284144 24296917 ~ 24320066 (+)
G66143 NA non-coding upstream 35452 22963871 ~ 22969303 (+)
G66144 NA non-coding upstream 41913 22958441 ~ 22962842 (+)
G66140 NA non-coding upstream 49321 22954277 ~ 22955434 (+)
G66062 NA non-coding upstream 685207 22318843 ~ 22319548 (+)
G66056 NA non-coding upstream 720683 22283434 ~ 22284072 (+)
G66183 NA non-coding downstream 95113 23107886 ~ 23204707 (+)
G66201 NA non-coding downstream 171584 23184357 ~ 23189666 (+)
G66207 NA non-coding downstream 213257 23226030 ~ 23226867 (+)
G66210 NA non-coding downstream 313494 23326267 ~ 23424924 (+)
G66223 NA non-coding downstream 382973 23395746 ~ 23396291 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other upstream 1287 22999370 ~ 23003468 (+)
ccdc167 NA other upstream 55556 22939555 ~ 22949199 (+)
gen1 gen1 other upstream 1289318 21629787 ~ 21715437 (+)
agbl5 NA other upstream 1455593 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 1980181 21024175 ~ 21024574 (+)
crebl2 crebl2,LOC107707978 other downstream 118307 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 209741 23222514 ~ 23323361 (+)
G66296 NA other downstream 431401 23444174 ~ 23444677 (+)
G66303 NA other downstream 470560 23483333 ~ 23483933 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other downstream 685379 23698152 ~ 23720094 (+)

Expression


Co-expression Network