rerg (rerg,LOC107662225,LOC107669035)


Basic Information

Item Value
gene id rerg
gene name rerg,LOC107662225,LOC107669035
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23451563 ~ 23548257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256037.3
ATGGCAAAGAGCCCAGAGGTGAAACTGGCGGTTTTTGGAAGAGCTGGAGTGGGGAAATCAGCTTTGGTGGTGAGGTTCCTGACAAAGCGCTTCATCTGGGAGTACGACCCTACCCTGGagtCTACATACCGACATCAAGCAAACATCGATGATGAGATGGTGAGCATGGAGATTTTGGACACAGCTGGACAGGAGGACCTGCTGCAGAAGGAGGGTCACATGCGCTGGGGCGACGGCTTCATCTTGGTTTACGACATCACAGACCGTGGCAGCTTTGAGGAAGTGGCCCCGCTGCGCAGCCTACTGGAGGAGGTCAAGAGGCCCAAGCACGCACCTCTAGTGCTGGTGGGGAACAAGGCAGACCTGGAGCACGCCCGGCAGGTGCCCACCGAGGAGGGCGAGCGGCTCGCAGCCGACATGGCCTGTGCCTTCTACGAGTGCTCAGCCTGTGCTGACCATGTGGGCACGGGAGGTGGCGTGGCAGAGGCTTTCTACGAGCTGTGTCGTGAGGTGCGGCGCCGCAGGGCCATGCAGGGCAAGACCCGCCGCCGCAGCTCCACCACACACGTCAAGCAAGCTATTAACAAGATGCTGACCAAGATCAGCAGCTAGGGAGGTGTTTGGAGAGCGTGATAGAGCAGTGAGGACAGAGAGGATGAGAAGACAGTAACAAAAGGCAAGAATGCCTAGAGTAAGAGGTAGGTGAAGACAGGGATGCTGGAAGGCAGGATGGTTGAGCAACAAATGCAGAAGCACTCCAAAATGACTGAAAAGTTATGGGTCTGCTTCTCCTGGACAGATAGAAAAGATGATTATGATCTGGGATTTTTGTCTGTAGGGAAAGATGAGTCGTCTATGCTACACAATGCGCTGCCTGTATATCATGGTTCATTGTGAAGTGCAAAAGAAATGACAGACAGTATGTTTAATCGTACTTGTGCCATAGCTTGTTTCGTAGAAGAATGTTTTCCTACGCTCCAAGGCCTTGCCATGTATATTTGTTCTCTGAGCTGTAATGAAGGATTCACTGAAACATCAACAGAGTTATCGGACTCACAGATCGCGACTCTGCCTGCAGATTTCATTCAGCATTGTGAATATGTTGACCCAAGAGAGATCTTTCTGAACAGTGACGCCGGTTTTCAAATAAACCATCACTCACCCTCATAATGAAGTTCAACGTGCCATTTTTCACATCAGATGGCACAAACCCTGCACCCGTGCTCAAAGTTTTGGAATGTCTTCTCATTCCAGAGCTGCTAGAGATTCTATCTCAAACGTGCGATGGGGAGTGTCCTTCTCTGGAACCACGAATAGTTGCAAAGATAGGCCTGGATGTGAAGGTTGTTTTTACACAGCTTTTTTCTTGTCTTAGCCATTATGTGTTACAACCAGCTTTGTTTACCAGACTGTTCCATTCCTCTGGCTGTCATAGATCATCCTCCAGTTGAAAGATGAACATACCTTTAATAAtggttttaaagtgttttgctGCCTTACTGTCTGAAATGAATGATTTCTTCTATAAATGAATTGTACAGTACATTACACTCATTGATTGGTGGGTTGGtccctttttttaaaggtgATCTGCATCATGATGTTGTGTTTCTTGGGGGTTCacaatgctgtgtttttttcaaaGGCTGCTTGTCTCACTGTTGCTAAGCAACAGTAGCGTCCTAACCGCAGTTCGTTGTGCAGTGCTATCAAGAGTTGCAGTGTCAGAGTTTCAGCTCTGCTACAGCTGTGGTGCCATTTTACTGAACAGCATTGTTAAGGATGCATAACACCTACATAAGCCTACAAACAGTAAACATTTCTAAATGATTACTTCAGCCAATATAAGTTGGCATTATAAAAACtgataataaactgtaataaacctTTTCTATAAATTGTCataaaaacatgtaatattACAAACACTGTTCTGCAAAAATGAAGTTAttatggcccaatcccatttctcatttgcACCCCTACCCTTCCATTTCGAGGGTCACCTTTCCCCTGATTGAAAGTGTTTGAAATCCTTCTCTTAAAAAATAGGCCAAACTTTCAAGAACCCGATCAattgtcaaaataaataaataaaaagaagcagGCTCCTAAAAGAACTGCATGTCTCTTGTGTTGCAGAGAGCAGCAACCTTGCAGCTGgaattgagttaaattcagGGCAATGtatcttttaaaaagcattgagcaattattatttatagtccAACTCCAATTCCTCAGTAGGGAGCTAAAGCTAGCTATACAATCTTATTGTGCAGATTGTTCAGTTTAAGGTGGAAAGACACATCTAGCCAGCTAGTTGCTAAAATGTGCTGCTAGCTATTTTAAATGCTTAGAAAAGGGCCATAATACATtgaaagtaaattaaactaGGATAATCAATGGTTATTGTGCAAAGTGGAGGGATAGGGTTAGATGGTTGGAGGTTTGAACCTTTGGCTGTGTCTAAAACTGGAAACTGCTAGTCTACTTGAACTCTAGCTATGTTGTCATCAGCTATTAGCAATTTCAATCAATATATTTAGAAATGACTGGGTGTCTTCCTGTCTCACAATCCTGTCTTAAGTAGGGAGCATTTCTTACGTTTCAGACACAGCCATAGGCTTTATTCACCTTCGTCACCATCGTCTACCAAAACGAGGCTGTGGAGTACGGAAGCAGCGTTGTACCGTTGGGTATTAGCAATAGTGCCTCACTGCTGCGTTCCTAAATGCACTTCTTTAAATAGAAAGAAATCTTATAAAGTTCAAACCTTCCATAGTTTCCCCAAAGATCCTGTACTTCACCATGAATAGATTCACAAAATCAGTAGAGATCACCATTTCAATTTAAGATGTCTGTTACTGtgctaggtaactagctaaggCTAAGCAGAAAGACAGTAAGCTAGCTAAACCGAGAGCTCTGGctatgactttattattaaccCTGAACTGGTTATTTTCTCGATTTAACGTTGAAACGAGTCGAGGGGTAATGTTAGTCAAGCCATAGCTCTTTAGAGTAGCCtgcttagttagctagctagctaatatccTACCGTGGGTATCCTGGTCTTGCAAGAGTGTGGGACTGTATTTGGCATTTAACGATCCTGTTAACATTAATCTTGATATTACAGATTAATGTGgacacaaaaatacatttagaacaCTTGATAAAAGTTTCTTTAAGACACTGTTTGGGATGTGAAAGTTAAAGAAGGATGCTGCACCCACGTTATTTGCCTGGACAGATGAAGTTTAGTGAAGCCTGTAAGGAGGACTGTAGTTAGACAAACTACAAGGAATTGTGTTGGAAGAATGACAAAGAAAAACGTTTAAAAGTCGCTTTATTGCTTAATTTGGAACAGTGGTTGCTGTTGGCCGCAACcaagccaaaaaaataaaaagctagagctaacaagctaacctaGCACTCAGGctgaacacacactcagcaaGCCCCCTTCTCCTCATCTtctccacacacacccacacacaccctgcaCTCTCCTCCGCTGCTCTCCCCAATCATGCCTGACCTATAATCTAAACTCAAGTGCATTTAATAGTCAGTAAAAACAGAACATGACTGCAGATTCGCAACACTATTTTTCTACAGTCACTCAGTTAGCAAGCGAGCTAACACGCATGTTTTCAATACAGGCAATACATAACATAGGCAATTACCTAGCTACCTTCCACATTCTGCACATAACCCCCGATCCATTTGCTGTAGCCTTTTAGTAAAACAGCTTGGGGAATCTTACACTTATTTTCTATCAATTTTTTCACCATTAATTCAGGGAGGTTTGCAGGCTCCCCCcagctttgcttttattttaacatggaGGCGGAGTGAATAAGGTCCATTACATCATAATTTCAATCCATAAACAAACCTAACTACTAATATATCTGATCCACCTTAACAGCCATTTAATTGGTCAGTAAAGTAAAACTAAATATTCATTTTGGAATGCATATAAACACATTGTGTCCAGTCCACataaaaagtgtgcaaaatTGTGTACAATATGAACAGCCCACAAGACTACATTAGCTGTAGTAACATTCTATTGTGTTTACTGTAAGAAATATGTCCCAAATTGCAGAATAATGATTATCCTGAGATGACACAGCATCCTGTTTCTCTTGCTGTACACTTGTAATAAAGATACTAAATACAGAGatatgtataaatgttttggaaagaaaa
>XM_015607512.2
GATCCCCAgcccgcagcagcagcagcagcatctccagcagcagcagcggctcgCGGACTGCAGCGCGCGGGGGCGGATATTACACAGGAGAGCCTGCCCACAAATGTGGAGGCGGAGATGAACCAATGAAGTTGCAGCGACAACGCACTGATACCTGTCCACTCTGTGATCGAGTCTTTGTGCTGAATTAGCTTCCGTCGTCATGGCAAAGAGCCCAGAGGTGAAACTGGCGGTTTTTGGAAGAGCTGGAGTGGGGAAATCAGCTTTGGTGGTGAGGTTCCTGACAAAGCGCTTCATCTGGGAGTACGACCCTACCCTGGagtCTACATACCGACATCAAGCAAACATCGATGATGAGATGGTGAGCATGGAGATTTTGGACACAGCTGGACAGGAGGACCTGCTGCAGAAGGAGGGTCACATGCGCTGGGGCGACGGCTTCATCTTGGTTTACGACATCACAGACCGTGGCAGCTTTGAGGAAGTGGCCCCGCTGCGCAGCCTACTGGAGGAGGTCAAGAGGCCCAAGCACGCACCTCTAGTGCTGGTGGGGAACAAGGCAGACCTGGAGCACGCCCGGCAGGTGCCCACCGAGGAGGGCGAGCGGCTCGCAGCCGACATGGCCTGTGCCTTCTACGAGTGCTCAGCCTGTGCTGACCATGTGGGCACGGGAGGTGGCGTGGCAGAGGCTTTCTACGAGCTGTGTCGTGAGGTGCGGCGCCGCAGGGCCATGCAGGGCAAGACCCGCCGCCGCAGCTCCACCACACACGTCAAGCAAGCTATTAACAAGATGCTGACCAAGATCAGCAGCTAGGGAGGTGTTTGGAGAGCGTGATAGAGCAGTGAGGACAGAGAGGATGAGAAGACAGTAACAAAAGGCAAGAATGCCTAGAGTAAGAGGTAGGTGAAGACAGGGATGCTGGAAGGCAGGATGGTTGAGCAACAAATGCAGAAGCACTCCAAAATGACTGAAAAGTTATGGGTCTGCTTCTCCTGGACAGATAGAAAAGAT

Function

symbol description
rerg Orthologous to human RERG (RAS like estrogen regulated growth inhibitor).

NR:

description
PREDICTED: ras-related and estrogen-regulated growth inhibitor

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07855 RERG; Ras-related and estrogen-regulated growth inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256037.3 True 4224 mRNA 0.42 4 23467533 23548257
XM_015607512.2 False 1012 mRNA 0.57 5 23451563 23544843

Neighbor

gene id symbol gene type direction distance location
lrp6 lrp6,LOC100705426 coding upstream 366519 23020384 ~ 23085044 (+)
LOC103025638 mansc1 coding upstream 438790 23004755 ~ 23012773 (+)
bcap29 bcap29 coding upstream 1153884 22284747 ~ 22297679 (+)
dus4l dus4l coding upstream 1173541 22274641 ~ 22278022 (+)
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding upstream 1207659 22181203 ~ 22243904 (+)
etv6 etv6 coding downstream 368049 23916306 ~ 23953720 (+)
LOC103023565 fam19a2,LOC103023565,LOC108411383,LOC108248567,LOC106529719,LOC103364248 coding downstream 478204 24026461 ~ 24117713 (+)
lrig3 lrig3,LOC104942525 coding downstream 748660 24296917 ~ 24320066 (+)
LOC111192915 NA coding downstream 911146 24459403 ~ 24461001 (+)
LOC103034593 LOC108442311 coding downstream 962232 24510489 ~ 24517356 (+)
G66210 NA non-coding upstream 26639 23326267 ~ 23424924 (+)
LOC111193001 NA non-coding upstream 51141 23396483 ~ 23400422 (+)
G66223 NA non-coding upstream 55272 23395746 ~ 23396291 (+)
G66207 NA non-coding upstream 224696 23226030 ~ 23226867 (+)
G66183 NA non-coding upstream 246856 23107886 ~ 23204707 (+)
G66334 NA non-coding downstream 25846 23574103 ~ 23574333 (+)
LOC111192880 NA non-coding downstream 45971 23594228 ~ 23599591 (+)
G66338 NA non-coding downstream 46604 23594861 ~ 23595114 (+)
G66353 NA non-coding downstream 269816 23818073 ~ 23820977 (+)
G66382 NA non-coding downstream 363571 23911828 ~ 23912211 (+)
G66296 NA other upstream 6886 23444174 ~ 23444677 (+)
eps8 eps8 other upstream 128202 23222514 ~ 23323361 (+)
crebl2 crebl2,LOC107707978 other upstream 313552 23131080 ~ 23138011 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other upstream 448095 22999370 ~ 23003468 (+)
ccdc167 NA other upstream 502364 22939555 ~ 22949199 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other downstream 149895 23698152 ~ 23720094 (+)
rpap3 rpap3 other downstream 819235 24367492 ~ 24383022 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other downstream 970365 24518622 ~ 24552340 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other downstream 1050909 24599166 ~ 24684580 (+)
cspg4 cspg4 other downstream 1640928 25189185 ~ 25300875 (+)

Expression


Co-expression Network