tmbim4 (tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279)


Basic Information

Item Value
gene id tmbim4
gene name tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 2661803 ~ 2668498 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259739.3
caaacatttaaagaacactAAGAGCTGACGCAACCGGTAGCTGATCCATTAGCTCTCTCACAGCTAGCGCTATAGCTGTTCAGTTCAGACACCATGAATCAGGAGAAATACCCCCGCTCTTCTATTGAAGATGATTTTAATTATGGCACTAACGTCGCCACGGCGAGCGTCCAGATCCGTATGGatTTCCTACGGAAAGTGTACACCATCCTGTCGCTGCAGATCATCGTAACCACAGCTGTGTCTGCCCTCTTCATGTTCTGTGAGCCCATCAAGAACTTTGTGCATTCCAGCCCCTCAGTGGTATTGGTGTCAGCTATTGGCTCCCTGGTTTTACTTCTAGCCCTGGCTATCTATCGTCACCAACACCCACTCAACCTCTACTTGCTGTTTGGATTTaccCTGTTGGAGGCAGTATCTGTGGCCACAGCAGTGACATTTTATGAATACTCAGTGGTGCTCCAGGCCTGCATCCTCACATCCGCTGTGTTTGCTTGCCTGACTACCTACACCTTCCAGTCCAAGCGCGACTTCAGCAAATTGGGAGCTGGGCTGTTTGCTGCTCTTTGGATCCTGATCATTGCGAGCTTTATGAGGCTGTTCTTCCAAAATGACACGATGGAGCTGGTGTTTGCTGGTTCTGGTGCACTGCTGTTCTGTGGCTTCATCATCTACGACACACACCTGCTGATGCACAAGTTGTCTCCTGAGGAGCACGTGCTGGCCTCCATCAACCTCTACCTGGACATAGTCAATCTCTTCCTTCACATCCTGCGTATCCTCGATTCCCTGAAGAAGAACTGAGAGATTTAGATTGAATGTCTGTCTATCTGGACTGTCTGCTGCTCCAGGGGTGAACTCAGAGTATTGCCATGTTGGTGCTCAATTGAAAAGACACAGATTCCATTGGTTTTAAATTATCTTCAATTATTTTGATCTGGTGTCCTGAAAcaaaacttaagaaaactttttattaaagtttaatttgattgtaattttacacaaatgaAAATGATGTTCAAGCTAGACTCATGCTGCATTCTCTTAGAAGTTAGAAGCTGTCGAAAGTTCTGATTGCTGGAACCAAAAAACGCATCCACAAGTCAATACATTGCATTAGCACTTCTGTCTATGTGTGTCCCATTAAATCAGTCTTACAAACCAATTACAA

Function

symbol description
tmbim4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM4 (transmembrane BAX inhibitor motif containing 4).

NR:

description
PREDICTED: protein lifeguard 4

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259739.3 True 1171 mRNA 0.45 7 2661803 2668498

Neighbor

gene id symbol gene type direction distance location
lemd3 lemd3,LOC106576661 coding downstream 48989 2600412 ~ 2612814 (-)
msrb3 msrb3,LOC107725596,LOC107757268,LOC107587134 coding downstream 64136 2574909 ~ 2597667 (-)
LOC103031987 NA coding downstream 189740 2466202 ~ 2472063 (-)
irak3 NA coding downstream 209901 2438077 ~ 2451902 (-)
helb NA coding downstream 224642 2426438 ~ 2437161 (-)
grip1 grip1 coding upstream 4675 2673173 ~ 3025867 (-)
LOC103044476 NA coding upstream 798704 3467202 ~ 3471553 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding upstream 1026689 3695187 ~ 3703230 (-)
LOC103030485 NA coding upstream 1165834 3834332 ~ 3838502 (-)
LOC103036484 NA coding upstream 1187044 3855542 ~ 3865736 (-)
G61425 NA non-coding downstream 4328 2655787 ~ 2657475 (-)
G61361 NA non-coding downstream 88294 2572697 ~ 2573509 (-)
G61359 NA non-coding downstream 125870 2535723 ~ 2535933 (-)
LOC111192931 NA non-coding downstream 575928 2071373 ~ 2085875 (-)
G61265 NA non-coding downstream 604471 2057120 ~ 2057332 (-)
G61427 NA non-coding upstream 14178 2682676 ~ 2683840 (-)
G61429 NA non-coding upstream 38294 2706792 ~ 2710406 (-)
G61559 NA non-coding upstream 576358 3244856 ~ 3245152 (-)
G61561 NA non-coding upstream 598140 3266638 ~ 3267010 (-)
G61595 NA non-coding upstream 674194 3342692 ~ 3342998 (-)
LOC103031776 NA other downstream 127450 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 203677 2454547 ~ 2458126 (-)
G61251 mkrn1 other downstream 667945 1984478 ~ 1993858 (-)
G61587 NA other upstream 645655 3314153 ~ 3315239 (-)
mdm1 NA other upstream 861022 3529520 ~ 3548702 (-)
G61676 NA other upstream 982347 3650845 ~ 3658268 (-)
cdpf1 cdpf1,LOC107695897 other upstream 1172103 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 1666620 4335118 ~ 4426156 (-)

Expression


Co-expression Network