wif1 (wif1,LOC107757271,LOC107594874,LOC107725640)


Basic Information

Item Value
gene id wif1
gene name wif1,LOC107757271,LOC107594874,LOC107725640
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 2614208 ~ 2642104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259741.3
AGCGCAGACATTTCAGTCTGTCAATCCCAGAGGCGGTGACGATACATTTAAACCGGGATTTCAGCGCGAGGAGGGACACGTTAAACCCGGCTCTTCACTCAGCATCCAGAGGGGTCGTTCGAAATGGCTCGGGGGTCTCCTGCTCTCCAGTCTTGCCTGAAAACTTACTTTTTTCTACTTTTGGGAGCTTTATCAGCCGGAGCTGCCCCCGAGCAGGGGAGCCTGTACATGTGGATTGATGCCAACCAGGCCAGGATACTGATAGGTTTCGAGGAGGATATCTTGATTGTGTCAGAAGGACAAATGGCCCCGTTCACACACGACTTTAAAAAAGCCCAGCAGCGCATGCCCGCCATACCTGTCCACATCCACCACGTGAACTTCACCTGGCAGGTCACTGATGATCAGGCCGAGTACTTCTACGAGTTCCAGTCTCTGCGCTCATTCGACAAGGAGATCATGGACGACCCCATCGTCAACGTACCGCTGCTGGGATCTGTCCCACACAAAGCTTCAGTGATTCAGGTAGGCTTCCCCTGCCGAGGCGACCAGGATGGGGTTGCAGCGTTTGAGGTCACTATCTTAGTGATGGATGGGGGTGGAAACATTATTCTGAGGACCCCACACAATGCCATCTTCTTCAAGACCTGCCAGAGAGcTAAGTGTCCTGGTGGCTGCAGGAATGGAGGATACTGCAATGAAAGACAAGTCTGCGAGTGTCAGGATGGCTTCTATGGAACACACTGCGAAAAAGCGCTGTGTTCACCAAGATGCCAGAACGGTGGTCTGTGTATGAGTCCAGGGGTCTGTATTTGTCCTCCTGGCTACTTTGGAGCCGGCTGTGAGAAAGctaactgcagcactacaTGTTTGAATGGGGGAACCTGTTTCCATCCTGGTAAATGTATTTGTCCTGCTGCATTTGAGGGCAGCCGCTGTGAAATAAGTAAATGCCGCCAGCCATGCAGAAATGGAGGCAAATGCATGGGGAGAAACAAATGCAAGTGCAGCAAGGGTTATCATGGAGATCTGTGCTCTAAAGctgtcTGCGAGCCCAGCTGTGGAGCACACGGGACATGCATAGAGCCCAACAGGTGCCACTGCAGGGACGGCTGGCACGGACGTCACTGCAATAAGAGGTACCGTGGTGGATTCCCTTTCATCCACCGCCCCACCATCTCCAGACCCAAGACCCAAGCCCCATCAGCAAAAGAAACCAAGGAGGCCTCTGATAATAACCAGCCCTCTGAGACCAACTACGTCGTTTAAGCTTCACACTCGCCCTCCTGGCACTCTCTGCCCCCTCCCGACCCAGCCTCCCAGGGGCCCGCTTCTCGTCCTCCCCCTTCAGATCCTCATCATCCGCCCTGGGatcctccctccatccctccgtgGACTTTTATTTTCATAGTCCATTCTCCGTATCCCCTTTCACAGTGTAAACTCCTTTGATAGAGTATCGCCCGGTTCGCAGCTCTGTCAGGTCCTTTCCCCTGCCCTGCAGATGCTGCGAGGGAGagaagggggtgggggggtgaggCAGTCACAGGCTGTTTTGTAATCCAGATTTGGCTGGAATTCAGCCTGTGATGTTTGTGAGCAGTCCTGAAGCTCAGCTGTAAATGTGGACATGAATCACAGGGAGTGCATTACAGTCCAGAGGCTCTTTTGTGTGGGCTTGACCTGACTGAGGAGGGTAATTACTGTCTTCAGCTCATGTTCATGGGTTGGCTCGCCTGTCCGGTTGGTTTCATCAACACTCACTTTCTCCTTCACACAGAGACAATGACTCAGTGGCTGAAGGTCTCTGAATAAGTACAGTTGAATTATGAGACTCTAGAACATTTATTCTGTAGTGTACACACCATGGGAagtggatacacacacacacacacacacatacacatatatatatatatatatatatatatatatatatatatatatttagttattatGATAAAGTAGGGTAGTTATTGCGTACTTTATTTACTCAAAGTTTTGATACTTAGTTGAGTTGTTGAAGGTATAACAATTCAGTTATACTTAATGAATAAGCTTCTTATTGCATCATAGACATAAGCAATTAATGGACTGTTATTTTCATCTGGGTGATTATACCACTCGAATAAAACCATCTCAATCATG

Function

symbol description
wif1 Predicted to enable signaling receptor binding activity. Acts upstream of or within negative regulation of canonical Wnt signaling pathway and swim bladder development. Predicted to be active in cell surface and extracellular region. Is expressed in several structures, including anterior swim bladder bud; nervous system; paraxial mesoderm; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; renal cell carcinoma; and urinary bladder cancer. Orthologous to human WIF1 (WNT inhibitory factor 1).

NR:

description
PREDICTED: wnt inhibitory factor 1

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K01691 WIF1; WNT inhibitory factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259741.3 True 2148 mRNA 0.49 10 2614208 2642104

Neighbor

gene id symbol gene type direction distance location
lmo3 lmo3,LOC107757261,LOC107550907 coding upstream 289948 2274367 ~ 2324260 (+)
tmem121b cecr6 coding upstream 608962 2003842 ~ 2005246 (+)
mkrn1 mkrn1,LOC107725576 coding upstream 612579 1984873 ~ 2001629 (+)
LOC103022068 asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562 coding upstream 752370 1846538 ~ 1861838 (+)
LOC103022369 LOC103022369,LOC108436003 coding upstream 768446 1842278 ~ 1845762 (+)
LOC103029880 NA coding downstream 11501 2653605 ~ 2657494 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 625860 3267964 ~ 3292593 (+)
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding downstream 700615 3342719 ~ 3373751 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding downstream 920641 3562745 ~ 3642423 (+)
mcat mcat,LOC107553884,LOC107732994 coding downstream 1003213 3645317 ~ 3651651 (+)
G61332 NA non-coding upstream 25032 2588071 ~ 2589176 (+)
G61334 NA non-coding upstream 32576 2576279 ~ 2581632 (+)
G61330 NA non-coding upstream 39783 2573819 ~ 2574425 (+)
G61320 NA non-coding upstream 144724 2466510 ~ 2469484 (+)
G61317 LOC103032312 non-coding upstream 152397 2454579 ~ 2461811 (+)
G61370 NA non-coding downstream 15814 2657918 ~ 2658139 (+)
G61397 NA non-coding downstream 209071 2851175 ~ 2931408 (+)
G61401 NA non-coding downstream 308577 2950681 ~ 2951094 (+)
G61558 NA non-coding downstream 602753 3244857 ~ 3245129 (+)
G61560 NA non-coding downstream 624204 3266308 ~ 3266887 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 678709 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 805278 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 1132790 1445635 ~ 1481418 (+)
G61014 NA other upstream 1565152 806565 ~ 1049056 (+)
G61575 NA other downstream 654442 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 3098451 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 3139987 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 3340132 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 4209126 6851230 ~ 6855762 (+)

Expression


Co-expression Network