lemd3 (lemd3,LOC106576661)


Basic Information

Item Value
gene id lemd3
gene name lemd3,LOC106576661
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 2600412 ~ 2612814 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259742.3
TGGCTGCTCTTGCGTCACTTCCTGCAGCGCGTCCTGTGCGAGTTTGGTGTGAAGATGGCGGCGGCGCAGCTAACGGACGAGGAGCTTTTCTCCGAGTTAAAACAGCTGGGCTTCACTCCCGGCCCGGTTACCGAGAACACGCGGCCTGTGTACTTGAAGAAGCTGAAGAAACTACGCGaggagcaacagcagcagcggtCTAGGGGCAGTAAGGGGCGCAGCAGTGTCGGTGGCGGcggtagcagcagcagctttagcAGCAGCATCAACAACAGCGGCGGCGGTAACGGCCACCCAGCGGCTGGAGCTGCGGCCGTGCGCGCCAGGCCGGCTGGGGGCCGCCAGGTGCTGAATGCGAAGCGGTCGGAGCGGCCGGGAAAGTTTGTTTTGGGCTTTAGCTCGGACGAGTCGGACGCGGAGCTTCCCCAGCACAAAGCAGGCCTGAATCACAGCGGCTCTAGGAGAGAGCGGGGCTCCGGGCTGGGGCTGCAGCCGCTGAGGCCTCCCCAGGAAAGTGGCGCCGGAGTCGCCCACAGAAAGTCGGCTCTCGGGGTTCTGGAGGGTCGGAAAAGTAGCCTCGTGGCGGCGTCTGCGTGGTGGGCAGACCGGGGTAAGGCGAGCTTAGGGGAGTCCCGCTCTAACCTGGCGTGGGATGAGGATTACACCCAGCTGGGGAAGGAGAACAGcttggaggagaagcagaagGAGACCGAGAGGAGCAGTCGGGCTCTGAACGGGAGCAGGACACAGCCTTACACAGCGCTCAGtggaagcagcagcagtaagCTGGCGGGGGATTACTCAGACACAGacgaagaggaggaagaagaagaggaggaggaggaggagttggAGGACCGTGAACGCCAACGCGAACGTCGTCTGCTGCCCAGGAGAAGCGTATCCAAAGCCTCCCCGTCTCCGGCCAAAAGAAGAGGCAGGGAGCCGGATGAGGAAGACGACCAGGAGGAGGACGGGAGGTCCGCGGGATCCGGGAGATCCAACGCAAAGCGCGATGAGTTCGATCTGAACCGCATTTACACGAGGCCCGCTCGCTTCAGCTCCGGCATCATGGGCGAGAATGGCGGGGACattgacagcagcagcagcagccccagGAACCACGTCGACGGCGGGCAGGGCGCGACCACCAGCAtaggcagcagcagctcctcgTTTAGCCTCGGCCTCAGACCTCGATTCTCCTCGTCGTACAACAGCCTGTCAACGACTTATCGACCCAACCATTCGAACCACACCGGCTCGAACCACAGCTACGGGCAGGCTTCCACCAAACGCAAGCAGCCAGCCCCCGAGGACGAGCTCCTGGAGCAGTTCCGGAGGGAGGAGGCGTCTGGCACCGGCGGCTTCAGCGCACACTACCTGTCCATGTTCCTCCTGACCGCTGCCTGCCTCTTCTTCGTGCTGCTTGGCCTCATGTACCTGAGAATGAGGGGTACTGGGTCCACAGACGAGGTCGTCatTAAGACCCACCCATTCGGTGCAGATTTTGACAACGCATATACCAACAGCGAGCGAGACCTCATTCTCAGCCTGTTGCTTCACCTGCACAATCATCTGTCTGATATTGCAGggGAACATGACTGCCGAGATCTAAACCTGCCGTTAAACAGGAGTGTCTCCATCTCTGAGGCTGCTGAGTATCTAAAGCTCCGAAATAAGGACTATGAAGATTGGATTCACATTTCTCTTGAGTGGGTTATTAAATCTGGAGAAACTGCTGGAATAAGGTTGATTGCAGCTGACCCTGCGCAAGCAGTGGAGGAAGTGTCTGATATCTCCCGTCTGGAGTCCACCCACCCACGCTTGTCTTTTGTCTGCCGTTTCCGACGAGCCTTCTTCACAGTGATTTACAGAGTTGTCCTCGTCCTCGCTGCCGTTGGTGGTTTTTGGGGCTTGGTGTATTACATGAAATACCGCTGGagaagagaggaggaagagaccAGGCAGATGTATGATATGGTGGAGAGAATTATAGATGTGCTGAGGAGCCATAATGAAGCATGCCAGGAGAATAATGACCTGCAGCCATACCTGCCCATCGTCCATGTGCGGGACTCCCTTGTGCAGCCTCAGGACAGgaggaagatgaagaAAGTATGGGACAGATCTATGACCTTCCTCTCTGCCAACGAGTCTCGCATCCGGACAGAAACGCAGAGAATTGGGGGAGCTGATTTTCTGGTGTGGAGGTGGCTCCAGCCTTCCATGTCCTGTGACAAGATGGGCAGTATACCCTCAAAAATGTGGCAGGGCAAAGCATTCCCTCTAGATCGGAGGAATTCACCACCAAACAGCTTGACGCCATGTCTAAAGATTCGGAACATGTTTGACCCCGTAATGGAAGTGGGGGAAAACTGGCATCTTGCCATTCATGAAGCCATTCTGGAGAAATGCAGCGACAATGATGGAATTGTCCATATTGCTGTTGACAAGAACTCAAGAGAGGGCTGTGTTTATGTGAAGTGCCTTTCagcagagcatgctgggaaagCTTTCAAAGCGCTTCATGGCTCTTGGTTTGATGGGAAACTTGTGACAGTAAAATACCTGCGTCTGGACCGATACCACCAACGTTTCCCACAGGCACTGGGTTGCAACACACCTCTAAAGGCCTCCAGCTCAAGTATGAACACTATGGCTCGTCTACACCAGCACTCCAGCACATCCAGCTCCCTGGGCTTCTCCTGAGGGCCACACAAACCCTCCCTCTAACCTCCACCACCAACTCCGTGATACACTTTTCTTTCCtgtttcctctcctctctccagTAAGAATCATGCTCAAGAGGTCTCTCCTCTTTGTGGGCTGGAGGACACAGTGCTACACCCTGCTAGCATCACTCACAGGTCGGTTTAAAAGAGTTCCTTGACTGCATCTTTTGGCTTATGCTGAGCAGGGGGGTGTGCTCACTGGATCGAGACTGGTGGTGGATATATGTGGAATTATCAGAGCTTTTCTTAGAAGAGCTGGTCGTTCATATCCCTTTTCCTCAACTTCAGTGCAGTGgacactaaatatatataatgttttttttcctatgcctgtttttttgttttgtttacagaCTTCAAGGattaaacaaggaaaaaaacacCTTCAAATTAAGTTCATGGTCCAGATTTGAGAAAGTAAAACAATAGAGCTGGTTCTGCTCTTCTCCCTCCAGTTTTCTCCAGCTAACTCCCCTCCATAGTTGAAAGGAGTTCTGTCAGGCTATACGTACGTAGCTGCATGTGCTGGTTAAAGTATCCCTATATTTAAGCTTTGAATTGTATCATATAATGGATGTTTATTTCCCAGAAGATGTTTTAGCTGATGTATtccttatttttcattttctttttttgtagttttagtcCAGAAACAATGGCATGCACACACTCTGGAAGGGATGCTGTAAATATTTTGTTGAATGGTGGTGGCTGAAATCAGCTGTATAAAACTGCAAGTTGTCATAAGCTCTAATTCGTTTCTTGCCAACTACATTGTTTCATTTCTGAGTTCAGAGaaagtcagtgttttattatttttttgaaaggTGTGTGGAGAGCTAAAATGGCTCCCTCTCTAGTTTACTGACTACCCCAATCTTCCcatcttgattgtattccagtaTACtctaatgtattattataattattatattattttgttcatgataaaatgtgctttttcatTATGATTGGTGCAGTTTGGTATTGACTTTGTTTACTCATCCAGCATTGTCTGCCTGCCAAAGTGATCAGTGTATGTCTGAAGCTATGTCTGGTCAACAGGTGGTGCAGTTGACCTGGTTTTGTCTGTTGGCATTCATACCACCTCTACACTGCCCATTTTGGTGAGAATGGCCATGTATAAGAGGTTCTATTCAGACAATGTACTCGTACTCATGTGCATGGTTGCACTTGTGGCAGGTTTACTACATCTCATTCATGGGTCTGAGAAGCCATACCCATTCTGTTCATATGTTACAGAGATTCACAAGCTTGTCATGTTAGTCATATCTTTTCAGATCTACAGAAAGATGCCAGCTGTTGTAAAAAATTGCGGTGGGTGTTAATTTGAGGTTAATAAAGCGTAATTGCATATTCTGAGGTGATCTGAATCTTTCCTAGTAAATTTGTATACCTTTCTATGAAATAGAAATTGCTTTGTCCCCTAGTGAACATCAAGGGCCAGATTGACTTAAACTGCAGGAAGCCAAGTTAGTTTTAGTAAATCTGCCCCTTTAGTCTCCATGATTTCTGCTCTGTGAGAGCTTTGTATTTGTGGGAAATGCAGTGCAGTTGGAATATTGCAGCGGGATGTACAAGCGATGCACGTGCAGTAAAAAAACAGGTGCACTCCTCTGCAGCAAATAACCTAATCGTGCCTTAattttgtgctgttttattgACTGGCACTGCATTTGTTGGGAATGTATTCGTATTTTTAAACGGTCCAAAACGTCTAATTGCTTAAAGATTTATCCTCTATTAATCTCCCTTCGATATTTTATGTTGTAATGACATGAAGTTTGAGTCCTTGTGTCTAAAATAATGTATACACATGGTTTTAGTTAATACAAACCCTTCATTAGTTGACCATGCTACCACACTAGTGCCCCTACACCctttctgctttttatttttggggTAAAGGGGGATTTTTAACTTTGAACAGAGCTGGTGTTGTGTAAgatataaaaacactaaaaattgAAGCCAGGAGTTATTTTTGCTGTACTTGCACACATCGTTGTAATCTTCCTTCATGTCTGTAGCCTGGCATTGCCTGTtgaaccttttatttttttggttgtttattTTCCCTGCAGTTTGTAAAGAGAGTGAATGTAAAGTTGGATTGGTGTGGCACGTCTCCAAAGTGTCACCTGACTTGCATCTGCATTctggatgtttttattttcttttctctgatGTATCTTATGTAAACACTGTACATTtataactgtaaaatgtaatattattctACAGCAGTCTCAATACATTGTATGGTTTTGACCAATGTCCCTGTCCTGCAAGCCAGAGGGGAAGGTGTACAATAATCCAGGCTTTTTAAAGCTTCAgatgttttaatgtaatttgtCACTTGTCTTGTTAAAACTGCTCTAATTAAAGGTTTATTAGGGGTTTTTAA

Function

symbol description
lemd3 Predicted to enable chromatin DNA binding activity. Acts upstream of or within cerebellum vasculature development. Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be integral component of nuclear inner membrane. Used to study arteriovenous malformations of the brain. Human ortholog(s) of this gene implicated in Buschke-Ollendorff syndrome. Orthologous to human LEMD3 (LEM domain containing 3).

NR:

description
PREDICTED: inner nuclear membrane protein Man1

GO:

id name namespace
GO:0005639 integral component of nuclear inner membrane cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K19410 LEMD3; inner nuclear membrane protein Man1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259742.3 True 5164 mRNA 0.48 13 2600412 2612814

Neighbor

gene id symbol gene type direction distance location
msrb3 msrb3,LOC107725596,LOC107757268,LOC107587134 coding downstream 2745 2574909 ~ 2597667 (-)
LOC103031987 NA coding downstream 128349 2466202 ~ 2472063 (-)
irak3 NA coding downstream 148510 2438077 ~ 2451902 (-)
helb NA coding downstream 163251 2426438 ~ 2437161 (-)
dera dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244 coding downstream 176288 2408474 ~ 2424124 (-)
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding upstream 48989 2661803 ~ 2668498 (-)
grip1 grip1 coding upstream 60359 2673173 ~ 3025867 (-)
LOC103044476 NA coding upstream 854388 3467202 ~ 3471553 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding upstream 1082373 3695187 ~ 3703230 (-)
LOC103030485 NA coding upstream 1221518 3834332 ~ 3838502 (-)
G61361 NA non-coding downstream 26903 2572697 ~ 2573509 (-)
G61359 NA non-coding downstream 64479 2535723 ~ 2535933 (-)
LOC111192931 NA non-coding downstream 514537 2071373 ~ 2085875 (-)
G61265 NA non-coding downstream 543080 2057120 ~ 2057332 (-)
G61261 NA non-coding downstream 559106 2041028 ~ 2041306 (-)
G61425 NA non-coding upstream 42973 2655787 ~ 2657475 (-)
G61427 NA non-coding upstream 69862 2682676 ~ 2683840 (-)
G61429 NA non-coding upstream 93978 2706792 ~ 2710406 (-)
G61559 NA non-coding upstream 632042 3244856 ~ 3245152 (-)
G61561 NA non-coding upstream 653824 3266638 ~ 3267010 (-)
LOC103031776 NA other downstream 66059 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 142286 2454547 ~ 2458126 (-)
G61251 mkrn1 other downstream 606554 1984478 ~ 1993858 (-)
G61587 NA other upstream 701339 3314153 ~ 3315239 (-)
mdm1 NA other upstream 916706 3529520 ~ 3548702 (-)
G61676 NA other upstream 1038031 3650845 ~ 3658268 (-)
cdpf1 cdpf1,LOC107695897 other upstream 1227787 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 1722304 4335118 ~ 4426156 (-)

Expression


Co-expression Network