msrb3 (msrb3,LOC107725596,LOC107757268,LOC107587134)


Basic Information

Item Value
gene id msrb3
gene name msrb3,LOC107725596,LOC107757268,LOC107587134
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 2574909 ~ 2597667 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259743.2
ACTGACCGCTTTAGCTGCTGTCAACAAATGCAGCTCGTCCGCCTCCGACCGGCCAGTCCTCCTCTCTCCAGCTTTTTCCTGAGTTTGGCTCTGCTTCTGTTTACTGCTTGCTCTCTTCACACCTTTCTGCTGAGTGACCCTCGCCCACTCGTTCCAACTTCTTCCGTATAGCTCCGCCCCACTGTCTCTGCTCAAGTTTGCTATAAGCCAGGATGGCTTGGCGTCTTCTCCGGTGCCTGGCCCCCGTGGCCCCGGTTGTGTCCTTAGCGATGCGCCAGCACAGAAGGACCACCTTGAATGTGGGGCGGCTCCTTAATGTCACATCACCAGCTTCACTAGGGACATGCCGCTCGAAGAAGACGTGGCCCAAAAGCTTTCCTCAGGAGGAGCTGAGGAAGCGCCTGACTCCCATGCAGTATCATGTCACTCAGGAGAAAGGCACAGAAAGTgcattcagaggagagtatgCAGACCACAAAGAAGAAGGAACGTATACCTGTGTTGTTTGCGGAACCCCTCTGTTCacGTCAGATAAAAAATTTGAATCGGGCTCAGgatgGCCATCATTTTTTGATCTGATCAAAGAGGAATCTATAACAACTATGGATGATTTCTCCTATGGTATGCACAGAGTGGAGACTGCCTGCAGTCAGTGTGGCGCTCACTTGGGACATCTCTTTGACGACGGACCGCGGCCAACTGGGAAGCGCTACTGCATAAACTCCGCCTCCCTCAGCTTCCAGCCCAAAGACGCTGCTGCTGAAGGGGTCGAACCAAGCGGAGGAGCCACAGGCCAGTCAGCGTCCTGTAGTAAGAGTGAGCTTTGAGAGGAACTTTTGGAGACCAAGCAAATATCAAACCCTCAGACCCTTGGGGGTACATCCCTTTAAAAATCACCTGGACTACCAAACCCAGATTAAACCTGACATGTTACAGGTAAGCCTAGCAATAAGACGAGAACGCCCTTACCTTAAATATCTGGTCTGGTCCTCCATGAAccagaaaactatttttttagtaGCAGAACATCAACAGCATCATTTCAATGGCCTTGGCTGGTTTGCCTCCTCAAGTTAACTGCCCATCAGAATGCACCTATGCCTAAATGTTCGAGATGTCTGTAAAGTGAACCCGCTCTCCCGGAAATCTGCACTACTGCTTTTATCATCCACTAGGAGGTTTTGATAGTGGAAGACTATGGACTGTGGGATTTTCTCCTCAAACATATAGCAGGATGCTGTTGCTTGTAAATGAATTATATATGTGTACTTTCTCAGAGTGATGTGTTGTTTTTGAAGTGATATTTGATACCGGGAGGTCATGGGTTTCAGGAAAATGCTATGCAAAGTGCTCCTGTAAGCGGTAAAATAAGCATCAAGCAGAGAACAAAGCATTCTTTCAAATAAAATGGAACAGATGACAAATGTTTAGTCTGAACACAAATGTAGCCTGACTTTTAAGGGTGCTTTTTGTCTCCCTGTTGGCGGtgcctctttttttcctcttggagtggattttttttgtgataggGGGAGGGGTGTTGATTTACTGATGGTGTTGACAAGTGTTATTAAAGAATTATTGAGTACAGTT
>XM_007259744.3
CGCTTTAGCTGCTGTCAACAAATGCAGCTCGTCCGCCTCCGACCGGCCAGTCCTCCTCTCTCCAGCTTTTTCCTGAGTTTGGCTCTGCTTCTGTTTACTGCTCCGCCCCACTGTCTCTGCTCAAGTTTGCTATAAGCCAGGATGGCTTGGCGTCTTCTCCGGTGCCTGGCCCCCGTGGCCCCGGTTGTGTCCTTAGCGATGCGCCAGCACAGAAGGACCACCTTGAATGTGGGGCGGCTCCTTAATGTCACATCACCAGCTTCACTAGGGACATGCCGCTCGAAGAAGACGTGGCCCAAAAGCTTTCCTCAGGAGGAGCTGAGGAAGCGCCTGACTCCCATGCAGTATCATGTCACTCAGGAGAAAGGCACAGAAAGTgcattcagaggagagtatgCAGACCACAAAGAAGAAGGAACGTATACCTGTGTTGTTTGCGGAACCCCTCTGTTCacGTCAGATAAAAAATTTGAATCGGGCTCAGgatgGCCATCATTTTTTGATCTGATCAAAGAGGAATCTATAACAACTATGGATGATTTCTCCTATGGTATGCACAGAGTGGAGACTGCCTGCAGTCAGTGTGGCGCTCACTTGGGACATCTCTTTGACGACGGACCGCGGCCAACTGGGAAGCGCTACTGCATAAACTCCGCCTCCCTCAGCTTCCAGCCCAAAGACGCTGCTGCTGAAGGGGTCGAACCAAGCGGAGGAGCCACAGGCCAGTCAGCGTCCTGTAGTAAGAGTGAGCTTTGAGAGGAACTTTTGGAGACCAAGCAAATATCAAACCCTCAGACCCTTGGGGGTACATCCCTTTAAAAATCACCTGGACTACCAAACCCAGATTAAACCTGACATGTTACAGGTAAGCCTAGCAATAAGACGAGAACGCCCTTACCTTAAATATCTGGTCTGGTCCTCCATGAAccagaaaactatttttttagtaGCAGAACATCAACAGCATCATTTCAATGGCCTTGGCTGGTTTGCCTCCTCAAGTTAACTGCCCATCAGAATGCACCTATGCCTAAATGTTCGAGATGTCTGTAAAGTGAACCCGCTCTCCCGGAAATCTGCACTACTGCTTTTATCATCCACTAGGAGGTTTTGATAGTGGAAGACTATGGACTGTGGGATTTTCTCCTCAAACATATAGCAGGATGCTGTTGCTTGTAAATGAATTATATATGTGTACTTTCTCAGAGTGATGTGTTGTTTTTGAAGTGATATTTGATACCGGGAGGTCATGGGTTTCAGGAAAATGCTATGCAAAGTGCTCCTGTAAGCGGTAAAATAAGCATCAAGCAGAGAACAAAGCATTCTTTCAAATAAAATGGAACAGATGACAAATGTTTAGTCTGAACACAAATGTAGCCTGACTTTTAAGGGTGCTTTTTGTCTCCCTGTTGGCGGtgcctctttttttcctcttggagtggattttttttgtgataggGGGAGGGGTGTTGATTTACTGATGGTGTTGACAAGTGTTATTAAAGAATTATTGAGTACAGTT
>XM_007259745.2
ctgcACATTCCCGAGCACCCCGACGCTGACTGACCGCTTTAGCTGCTGTCAACAAATGCAGCTCGTCCGCCTCCGACCGGCCAGTCCTCCTCTCTCCAGCTTTTTCCTGAGTTTGGCTCTGCTTCTGTTTACTGcCTGAGCGGCAGACGGCCCTCTGTCGCTTGCTCTCCTTCCAGCAGcaacagcatcagcatcagcatcagtggTAACAGCAGCCATGTCCGGGTTCAATCTGCTGCATCTGGTGACCAAAAGCCAACCTGTTAAACTCAAGGCCTGCGGGCTTCCCTCAGGGACATGCCGCTCGAAGAAGACGTGGCCCAAAAGCTTTCCTCAGGAGGAGCTGAGGAAGCGCCTGACTCCCATGCAGTATCATGTCACTCAGGAGAAAGGCACAGAAAGTgcattcagaggagagtatgCAGACCACAAAGAAGAAGGAACGTATACCTGTGTTGTTTGCGGAACCCCTCTGTTCacGTCAGATAAAAAATTTGAATCGGGCTCAGgatgGCCATCATTTTTTGATCTGATCAAAGAGGAATCTATAACAACTATGGATGATTTCTCCTATGGTATGCACAGAGTGGAGACTGCCTGCAGTCAGTGTGGCGCTCACTTGGGACATCTCTTTGACGACGGACCGCGGCCAACTGGGAAGCGCTACTGCATAAACTCCGCCTCCCTCAGCTTCCAGCCCAAAGACGCTGCTGCTGAAGGGGTCGAACCAAGCGGAGGAGCCACAGGCCAGTCAGCGTCCTGTAGTAAGAGTGAGCTTTGAGAGGAACTTTTGGAGACCAAGCAAATATCAAACCCTCAGACCCTTGGGGGTACATCCCTTTAAAAATCACCTGGACTACCAAACCCAGATTAAACCTGACATGTTACAGGTAAGCCTAGCAATAAGACGAGAACGCCCTTACCTTAAATATCTGGTCTGGTCCTCCATGAAccagaaaactatttttttagtaGCAGAACATCAACAGCATCATTTCAATGGCCTTGGCTGGTTTGCCTCCTCAAGTTAACTGCCCATCAGAATGCACCTATGCCTAAATGTTCGAGATGTCTGTAAAGTGAACCCGCTCTCCCGGAAATCTGCACTACTGCTTTTATCATCCACTAGGAGGTTTTGATAGTGGAAGACTATGGACTGTGGGATTTTCTCCTCAAACATATAGCAGGATGCTGTTGCTTGTAAATGAATTATATATGTGTACTTTCTCAGAGTGATGTGTTGTTTTTGAAGTGATATTTGATACCGGGAGGTCATGGGTTTCAGGAAAATGCTATGCAAAGTGCTCCTGTAAGCGGTAAAATAAGCATCAAGCAGAGAACAAAGCATTCTTTCAAATAAAATGGAACAGATGACAAATGTTTAGTCTGAACACAAATGTAGCCTGACTTTTAAGGGTGCTTTTTGTCTCCCTGTTGGCGGtgcctctttttttcctcttggagtggattttttttgtgataggGGGAGGGGTGTTGATTTACTGATGGTGTTGACAAGTGTTATTAAAGAATTATTGAGTACAGTT
>XM_015608482.2
AAggcatttcccacaatgcactgcACATTCCCGAGCACCCCGACGCTGACTGACCGCTTTAGCTGCTGTCAACAAATGCAGCTCGTCCGCCTCCGACCGGCCAGTCCTCCTCTCTCCAGCTTTTTCCTGAGTTTGGCTCTGCTTCTGTTTACTGGGACATGCCGCTCGAAGAAGACGTGGCCCAAAAGCTTTCCTCAGGAGGAGCTGAGGAAGCGCCTGACTCCCATGCAGTATCATGTCACTCAGGAGAAAGGCACAGAAAGTgcattcagaggagagtatgCAGACCACAAAGAAGAAGGAACGTATACCTGTGTTGTTTGCGGAACCCCTCTGTTCacGTCAGATAAAAAATTTGAATCGGGCTCAGgatgGCCATCATTTTTTGATCTGATCAAAGAGGAATCTATAACAACTATGGATGATTTCTCCTATGGTATGCACAGAGTGGAGACTGCCTGCAGTCAGTGTGGCGCTCACTTGGGACATCTCTTTGACGACGGACCGCGGCCAACTGGGAAGCGCTACTGCATAAACTCCGCCTCCCTCAGCTTCCAGCCCAAAGACGCTGCTGCTGAAGGGGTCGAACCAAGCGGAGGAGCCACAGGCCAGTCAGCGTCCTGTAGTAAGAGTGAGCTTTGAGAGGAACTTTTGGAGACCAAGCAAATATCAAACCCTCAGACCCTTGGGGGTACATCCCTTTAAAAATCACCTGGACTACCAAACCCAGATTAAACCTGACATGTTACAGGTAAGCCTAGCAATAAGACGAGAACGCCCTTACCTTAAATATCTGGTCTGGTCCTCCATGAAccagaaaactatttttttagtaGCAGAACATCAACAGCATCATTTCAATGGCCTTGGCTGGTTTGCCTCCTCAAGTTAACTGCCCATCAGAATGCACCTATGCCTAAATGTTCGAGATGTCTGTAAAGTGAACCCGCTCTCCCGGAAATCTGCACTACTGCTTTTATCATCCACTAGGAGGTTTTGATAGTGGAAGACTATGGACTGTGGGATTTTCTCCTCAAACATATAGCAGGATGCTGTTGCTTGTAAATGAATTATATATGTGTACTTTCTCAGAGTGATGTGTTGTTTTTGAAGTGATATTTGATACCGGGAGGTCATGGGTTTCAGGAAAATGCTATGCAAAGTGCTCCTGTAAGCGGTAAAATAAGCATCAAGCAGAGAACAAAGCATTCTTTCAAATAAAATGGAACAGATGACAAATGTTTAGTCTGAACACAAATGTAGCCTGACTTTTAAGGGTGCTTTTTGTCTCCCTGTTGGCGGtgcctctttttttcctcttggagtggattttttttgtgataggGGGAGGGGTGTTGATTTACTGATGGTGTTGACAAGTGTTATTAAAGAATTATTGAGTACAGTT
>XM_022671226.1
TGCGCCAGCACAGAAGGACCACCTTGAATGTGGGGCGGCTCCTTAATGTCACATCACCAGCTTCACTAGcCTGAGCGGCAGACGGCCCTCTGTCGCTTGCTCTCCTTCCAGCAGcaacagcatcagcatcagcatcagtggTAACAGCAGCCATGTCCGGGTTCAATCTGCTGCATCTGGTGACCAAAAGCCAACCTGTTAAACTCAAGGCCTGCGGGCTTCCCTCAGGGACATGCCGCTCGAAGAAGACGTGGCCCAAAAGCTTTCCTCAGGAGGAGCTGAGGAAGCGCCTGACTCCCATGCAGTATCATGTCACTCAGGAGAAAGGCACAGAAAGTgcattcagaggagagtatgCAGACCACAAAGAAGAAGGAACGTATACCTGTGTTGTTTGCGGAACCCCTCTGTTCacGTCAGATAAAAAATTTGAATCGGGCTCAGgatgGCCATCATTTTTTGATCTGATCAAAGAGGAATCTATAACAACTATGGATGATTTCTCCTATGGTATGCACAGAGTGGAGACTGCCTGCAGTCAGTGTGGCGCTCACTTGGGACATCTCTTTGACGACGGACCGCGGCCAACTGGGAAGCGCTACTGCATAAACTCCGCCTCCCTCAGCTTCCAGCCCAAAGACGCTGCTGCTGAAGGGGTCGAACCAAGCGGAGGAGCCACAGGCCAGTCAGCGTCCTGTAGTAAGAGTGAGCTTTGAGAGGAACTTTTGGAGACCAAGCAAATATCAAACCCTCAGACCCTTGGGGGTACATCCCTTTAAAAATCACCTGGACTACCAAACCCAGATTAAACCTGACATGTTACAGGTAAGCCTAGCAATAAGACGAGAACGCCCTTACCTTAAATATCTGGTCTGGTCCTCCATGAAccagaaaactatttttttagtaGCAGAACATCAACAGCATCATTTCAATGGCCTTGGCTGGTTTGCCTCCTCAAGTTAACTGCCCATCAGAATGCACCTATGCCTAAATGTTCGAGATGTCTGTAAAGTGAACCCGCTCTCCCGGAAATCTGCACTACTGCTTTTATCATCCACTAGGAGGTTTTGATAGTGGAAGACTATGGACTGTGGGATTTTCTCCTCAAACATATAGCAGGATGCTGTTGCTTGTAAATGAATTATATATGTGTACTTTCTCAGAGTGATGTGTTGTTTTTGAAGTGATATTTGATACCGGGAGGTCATGGGTTTCAGGAAAATGCTATGCAAAGTGCTCCTGTAAGCGGTAAAATAAGCATCAAGCAGAGAACAAAGCATTCTTTCAAATAAAATGGAACAGATGACAAATGTTTAGTCTGAACACAAATGTAGCCTGACTTTTAAGGGTGCTTTTTGTCTCCCTGTTGGCGGtgcctctttttttcctcttggagtggattttttttgtgataggGGGAGGGGTGTTGATTTACTGATGGTGTTGACAAGTGTTATTAAAGAATTATTGAGTACAGTT

Function

symbol description
msrb3 Predicted to enable peptide-methionine (R)-S-oxide reductase activity. Acts upstream of or within inner ear development. Predicted to be active in cytoplasm. Is expressed in heart rudiment; heart tube; inner ear; and myotome. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 74. Orthologous to human MSRB3 (methionine sulfoxide reductase B3).

NR:

description
PREDICTED: methionine-R-sulfoxide reductase B3 isoform X3

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030091 protein repair biological_process
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG:

id description
K07305 msrB; peptide-methionine (R)-S-oxide reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259743.2 True 1593 mRNA 0.48 7 2574909 2597619
XM_007259744.3 False 1522 mRNA 0.47 7 2574909 2597613
XM_007259745.2 False 1547 mRNA 0.47 7 2574909 2597647
XM_015608482.2 False 1408 mRNA 0.46 6 2574909 2597667
XM_022671226.1 False 1482 mRNA 0.47 7 2574909 2594170

Neighbor

gene id symbol gene type direction distance location
LOC103031987 NA coding downstream 102846 2466202 ~ 2472063 (-)
irak3 NA coding downstream 123007 2438077 ~ 2451902 (-)
helb NA coding downstream 137748 2426438 ~ 2437161 (-)
dera dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244 coding downstream 150785 2408474 ~ 2424124 (-)
LOC103036743 LOC108426350,LOC107757264,LOC107594552,LOC107694246 coding downstream 197644 2373096 ~ 2377265 (-)
lemd3 lemd3,LOC106576661 coding upstream 2745 2600412 ~ 2612814 (-)
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding upstream 64136 2661803 ~ 2668498 (-)
grip1 grip1 coding upstream 75506 2673173 ~ 3025867 (-)
LOC103044476 NA coding upstream 869535 3467202 ~ 3471553 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding upstream 1097520 3695187 ~ 3703230 (-)
G61361 NA non-coding downstream 1400 2572697 ~ 2573509 (-)
G61359 NA non-coding downstream 38976 2535723 ~ 2535933 (-)
LOC111192931 NA non-coding downstream 489034 2071373 ~ 2085875 (-)
G61265 NA non-coding downstream 517577 2057120 ~ 2057332 (-)
G61261 NA non-coding downstream 533603 2041028 ~ 2041306 (-)
G61425 NA non-coding upstream 58120 2655787 ~ 2657475 (-)
G61427 NA non-coding upstream 85009 2682676 ~ 2683840 (-)
G61429 NA non-coding upstream 109125 2706792 ~ 2710406 (-)
G61559 NA non-coding upstream 647189 3244856 ~ 3245152 (-)
G61561 NA non-coding upstream 668971 3266638 ~ 3267010 (-)
LOC103031776 NA other downstream 40556 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 116783 2454547 ~ 2458126 (-)
G61251 mkrn1 other downstream 581051 1984478 ~ 1993858 (-)
G61587 NA other upstream 716486 3314153 ~ 3315239 (-)
mdm1 NA other upstream 931853 3529520 ~ 3548702 (-)
G61676 NA other upstream 1053178 3650845 ~ 3658268 (-)
cdpf1 cdpf1,LOC107695897 other upstream 1242934 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 1737451 4335118 ~ 4426156 (-)

Expression


Co-expression Network