Gene
RNA
| Item | Value |
|---|---|
| gene id | braf |
| gene name | braf,LOC107725591 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035903.1 |
| NCBI id | CM008306.1 |
| chromosome length | 40813162 |
| location | 148669 ~ 179010 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| braf | Predicted to enable protein kinase activity. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including Noonan syndrome 7; carcinoma (multiple); cardiofaciocutaneous syndrome (multiple); central nervous system benign neoplasm (multiple); and melanoma (multiple). Orthologous to human BRAF (B-Raf proto-oncogene, serine/threonine kinase). |
| description |
|---|
| serine/threonine-protein kinase B-raf isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0005057 | obsolete signal transducer activity, downstream of receptor | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| id | description |
|---|---|
| K04365 | BRAF; B-Raf proto-oncogene serine/threonine-protein kinase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_007259764.3 | True | 3350 | mRNA | 0.51 | 19 | 148681 | 179010 |
| XM_022671192.1 | False | 2725 | mRNA | 0.54 | 20 | 148669 | 178249 |
| XM_022671193.1 | False | 2598 | mRNA | 0.54 | 19 | 148673 | 178249 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103031583 | NA | coding | downstream | 13182 | 192192 ~ 194844 (+) |
| LOC111192919 | NA | coding | downstream | 380016 | 559026 ~ 565310 (+) |
| LOC103022716 | NA | coding | downstream | 391211 | 570221 ~ 574501 (+) |
| LOC107197032 | NA | coding | downstream | 407683 | 586693 ~ 590105 (+) |
| LOC103021355 | LOC103021355,LOC108426405,LOC108279735,LOC107757248,LOC107694301,LOC100694258,LOC107590616 | coding | downstream | 435103 | 614113 ~ 621742 (+) |
| G60903 | NA | non-coding | downstream | 98000 | 277010 ~ 277322 (+) |
| G60910 | NA | non-coding | downstream | 276826 | 455836 ~ 470689 (+) |
| G60983 | NA | non-coding | downstream | 437764 | 616774 ~ 623435 (+) |
| G60996 | NA | non-coding | downstream | 561681 | 740691 ~ 740898 (+) |
| G61011 | NA | non-coding | downstream | 621639 | 800649 ~ 800870 (+) |
| mrps33 | mrps33,LOC106591474,LOC107694294,LOC107725593 | other | upstream | 1895 | 144189 ~ 146774 (+) |
| LOC103023024 | cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 | other | downstream | 360508 | 539518 ~ 558580 (+) |
| LOC103045537 | NA | other | downstream | 420649 | 599659 ~ 625009 (+) |
| G61014 | NA | other | downstream | 627555 | 806565 ~ 1049056 (+) |
| G61013 | LOC108444125,LOC108444119,LOC108412201,LOC108262118 | other | downstream | 674516 | 853526 ~ 1043316 (+) |
| LOC103024246 | tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 | other | downstream | 1266625 | 1445635 ~ 1481418 (+) |
