LOC103031106 (LOC108438797)


Basic Information

Item Value
gene id LOC103031106
gene name LOC108438797
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3847043 ~ 3853727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601030.2
CTGGATTCACCCACACAGACATGGATCTGAGTGGTAAGGAGGGAAATCCACACTGCCTGGGCTCCGGCTGCCTGTAGCTGCGATACTTTACAGTGACATGCAGGGAACAGAGGGAACATTAGGAGGTCCTGATGTCAGAAGGAGGATCCCCATCAAACTCCTTCCCAAACAGGCTCGAAAGAGCTTCGCTTATAAACAGGAGGAGAGGTTTGAGTTTGGGGCGAAGGCAGGAGATGCATTTGCAGGCCAGCGGCGGTACCCTCAGCAGTTCTACTGGGATTATAAGCTCAATCTGATTGGTGAGAGGGATGAGACCCCTGTGCACTTCTGTGACAAGTGCGGTCTGCCCATTAAGAGCTATGGTCGAATGATTCCTTGTAAGCATGTTTTCTGTTATGATTGTGCACTGCTTCACGAGAGGAAGGGTGATAAAATGTGCCCAGGTTTAACAATGTACAGCTGCACAGACCCAGTCCAGCGTATCGAGCAGTGTCAGCGAGGCTCACTCTTTATGTGCAGCATCGTTCAGGGCTGCAAGCGCACCTACCTCTCCCAGAGAGACCTGCAGGCGCACGTAAACCACCGCCACATGAGGCAGAGCAAGTCCTCATCAGGCCGCTCTGACCCTCTCCACCTTCCGGCTTCATCTGAGGTGTCGGACCGCTTCCGCGTGCCCCCTCCTCACCTGTCAAAACCTCATGTGCTCatccctccccctctctcacaCGTGGGTCATGACACTTACAATCAGCCACCTCCTGGGCCCCACGACGATCTCCGAACTCCACCAGGACAGCCTGGTGCTGACATGGGGTCATCTCGCGCTCTTGCTCAAGAGACCTTTCGCATTGCTACACTGACCACCAGGAAGCACAGCAACCTTATCACTGTCCCCATTCAGGACGATTCGACGAGCCCCATCCCCCGGGATCAGCTCCCCCAGTCTGCCAATGCCCCTCCTCCACACCACCACCCAGGAGATTATCCAGGACAGCCTGTTGTATCCCTCCCACACCACATGATGGTGCCACCGCAGCAGCGTTACGGTCCTCCACCTCCTCCGCCTCCCATCACTCATCCGATGCAACACCCATCCCAGGGCTCCAGCTCCCACATGGTCTTCAACCAAGCCCCGCCTCCACCTTTATCCTCAGTTCCACCTCCCATCACCCCACCTCCTGGACACCTCATGGGTCAACTGCCACCATACATGAGTCATCCTCCACCAGGCCCTCCTCCTCAACATGGCGGCCCACCAGTTAATGCCCCACCGCCTCACCATTACAACACCCAGTTTTCAGAGGACAAAGGCACTCTTAGCCCACCTTTCAACCAGCCAGGTGGGCTGAGTCCAGGGATGTGGCCTGCCCCGAGAGGACCCCCTCCCCCCAGAATGCAAGGCCCACCCCAGGGCCAAATGCCTGGACCCCATCATCCAGACCAGGGCCGCTACAGGCCGTATTACCAATAgaatgtttttgtttctctgaaCAGTGATCTCAAACACAATTCTGTGGTAAGGTTTCATAAGGCCTGTTGTACAGTTCAGTATAGATTTGGACTGCATATAAAAAGTTATGTAATTAATGTCAGACATTATAGTATATACCTTTAATTATGGACATTATTTTggttaaaagaaacaaaacagttGAATTtggtaatattttaaaattatgttgAATGTGTTCTTTCTTGAATGTATTAAGAATTAAATGCACAGTATGTAAAGGTTTTCACCACTGTTTTATCATTAttgctttatcttttttttccagcttatccaaaattattcttttttttattattaaagctcTTATAAGGTGTTGAAATGTGCAATAACAGATTAGACAGACAGATTGTTAGTGCACTTACAAGTGTAGTTGGGCAAAGGCTGCAGATGAAGTGTGTAGCTACATTCCTTAGAGATGAATAATATTCGAGCCTGGCTAATAAAGAAAGCgaacattt
>XM_022671242.1
GCAATGACTCTGGATTCACCCACACAGACATGGATCTGAGTGGTAAGGAGGGAAATCCACACTGCCTGGGCTCCGGCTGCCTGTAGCTGCGATACTTTACAGACAGTGACATGCAGGGAACAGAGGGAACATTAGGAGGTCCTGATGTCAGAAGGAGGATCCCCATCAAACTCCTTCCCAAACAGGCTCGAAAGAGCTTCGCTTATAAACAGGAGGAGAGGTTTGAGTTTGGGGCGAAGGCAGGAGATGCATTTGCAGGCCAGCGGCGGTACCCTCAGCAGTTCTACTGGGATTATAAGCTCAATCTGATTGGTGAGAGGGATGAGACCCCTGTGCACTTCTGTGACAAGTGCGGTCTGCCCATTAAGAGCTATGGTCGAATGATTCCTTGTAAGCATGTTTTCTGTTATGATTGTGCACTGCTTCACGAGAGGAAGGGTGATAAAATGTGCCCAGGTTTAACAATGTACAGCTGCACAGACCCAGTCCAGCGTATCGAGCAGTGTCAGCGAGGCTCACTCTTTATGTGCAGCATCGTTCAGGGCTGCAAGCGCACCTACCTCTCCCAGAGAGACCTGCAGGCGCACGTAAACCACCGCCACATGAGGCAGAGCAAGTCCTCATCAGGCCGCTCTGACCCTCTCCACCTTCCGGCTTCATCTGAGGTGTCGGACCGCTTCCGCGTGCCCCCTCCTCACCTGTCAAAACCTCATGTGCTCatccctccccctctctcacaCGTGGGTCATGACACTTACAATCAGCCACCTCCTGGGCCCCACGACGATCTCCGAACTCCACCAGGACAGCCTGGTGCTGACATGGGGTCATCTCGCGCTCTTGCTCAAGAGACCTTTCGCATTGCTACACTGACCACCAGGAAGCACAGCAACCTTATCACTGTCCCCATTCAGGACGATTCGACGAGCCCCATCCCCCGGGATCAGCTCCCCCAGTCTGCCAATGCCCCTCCTCCACACCACCACCCAGGAGATTATCCAGGACAGCCTGTTGTATCCCTCCCACACCACATGATGGTGCCACCGCAGCAGCGTTACGGTCCTCCACCTCCTCCGCCTCCCATCACTCATCCGATGCAACACCCATCCCAGGGCTCCAGCTCCCACATGGTCTTCAACCAAGCCCCGCCTCCACCTTTATCCTCAGTTCCACCTCCCATCACCCCACCTCCTGGACACCTCATGGGTCAACTGCCACCATACATGAGTCATCCTCCACCAGGCCCTCCTCCTCAACATGGCGGCCCACCAGTTAATGCCCCACCGCCTCACCATTACAACACCCAGTTTTCAGAGGACAAAGGCACTCTTAGCCCACCTTTCAACCAGCCAGGTGGGCTGAGTCCAGGGATGTGGCCTGCCCCGAGAGGACCCCCTCCCCCCAGAATGCAAGGCCCACCCCAGGGCCAAATGCCTGGACCCCATCATCCAGACCAGGGCCGCTACAGGCCGTATTACCAATAgaatgtttttgtttctctgaaCAGTGATCTCAAACACAATTCTGTGGTAAGGTTTCATAAGGCCTGTTGTACAGTTCAGTATAGATTTGGACTGCATATAAAAAGTTATGTAATTAATGTCAGACATTATAGTATATACCTTTAATTATGGACATTATTTTggttaaaagaaacaaaacagttGAATTtggtaatattttaaaattatgttgAATGTGTTCTTTCTTGAATGTATTAAGAATTAAATGCACAGTATGTAAAGGTTTTCACCACTGTTTTATCATTAttgctttatcttttttttccagcttatccaaaattattcttttttttattattaaagctcTTATAAGGTGTTGAAATGTGCAATAACAGATTAGACAGACAGATTGTTAGTGCACTTACAAGTGTAGTTGGGCAAAGGCTGCAGATGAAGTGTGTAGCTACATTCCTTAGAGATGAATAATATTCGAGCCTGGCTAATAAAGAAAGCgaacattt

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase Hakai-like isoform X1

GO: NA

KEGG:

id description
K15685 CBLL1; E3 ubiquitin-protein ligase Hakai

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601030.2 False 1971 mRNA 0.50 6 3847052 3853727
XM_022671242.1 True 1984 mRNA 0.50 6 3847043 3853727

Neighbor

gene id symbol gene type direction distance location
cfap54 NA coding upstream 152119 3656162 ~ 3694924 (+)
mcat mcat,LOC107553884,LOC107732994 coding upstream 195392 3645317 ~ 3651651 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding upstream 204620 3562745 ~ 3642423 (+)
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding upstream 473292 3342719 ~ 3373751 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 554450 3267964 ~ 3292593 (+)
LOC103029111 NA coding downstream 83764 3937491 ~ 3949734 (+)
atxn10 atxn10 coding downstream 102935 3956662 ~ 3968956 (+)
LOC103027723 ppara coding downstream 194515 4048242 ~ 4074563 (+)
mcm10 NA coding downstream 229956 4083683 ~ 4099389 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding downstream 821632 4675359 ~ 4701435 (+)
LOC111192865 NA non-coding upstream 132795 3713557 ~ 3714248 (+)
LOC111192864 NA non-coding upstream 133620 3712242 ~ 3713423 (+)
G61657 rint1 non-coding upstream 149262 3695234 ~ 3697781 (+)
G61607 NA non-coding upstream 449271 3394516 ~ 3397772 (+)
G61608 NA non-coding upstream 451008 3394779 ~ 3396035 (+)
LOC103028258 NA non-coding downstream 157657 4011384 ~ 4044308 (+)
G61804 NA non-coding downstream 202712 4056439 ~ 4056959 (+)
G61815 NA non-coding downstream 268955 4122682 ~ 4122963 (+)
G61790 NA non-coding downstream 276590 4130317 ~ 4131090 (+)
G61786 NA non-coding downstream 278036 4131763 ~ 4136771 (+)
G61575 NA other upstream 543045 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 1911544 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 2038113 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 2365625 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 2803727 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 1886828 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 1928364 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 2128509 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 2997503 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 4548113 8401840 ~ 8415039 (+)

Expression


Co-expression Network