LOC103037311 (LOC103037311,LOC103358095,LOC106514816,LOC107386321)


Basic Information

Item Value
gene id LOC103037311
gene name LOC103037311,LOC103358095,LOC106514816,LOC107386321
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19780663 ~ 19794325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601151.2
GACGGTGAGCGCACAGTTGAGGTGTGCGCAGGCTGAGCACTGAGGAGTTGAATACCAGGAGCAAGTTAAaggatattttaataattaacatcttattttaataaatctcAGCGATACAATGTGGAAGTCTGTGGTGGGCCATGATGTAAATGTGAAGGTGGCATCAGAGGGAGACGACTGGGAGACGGATCCAGATTTTGAGAATGACGTCTCGGAGCAGGAGCAGAGGTGGGGGTCCAAAACAATAGAAGGGTCCGGCCGGAAGGAGCACATCAGTGTTGCAGATCTGAGGCAAAAGGTGTCTCATGAGCATGAGGTGGTGAAGAAGAAGGAGCTGGATTCGGGCCCAAAGGCATCTTATGGATATGGAGGAAAATTTGGGGTGGAGAAAGACAGAATGGATAAGGGTGCAGTGGGACATTCCTATGTGGCTCAGGTAGATCAGCACTCTTCCCAGACGGATGCAGCAAAGGGTTTTGGAGGGAAATTCGGGGTGCAGAAGGATCGTGTAGATAAGTCTGCCATGAATTATGAATATAAGGGAGAAGTTGACCAGCATGCATCTCAGAAAGACTACGCCAAAGGGTTTGGTGGAAAGTACGGAGTGCAGAAGGAGAGAGTGGATAAAGCTGCTCTGGGTTACGACTACAAAGGAGAAACTGAGAAACACCAATCCCAGAAAGATTACTCAAAGGGTTTTGGAGGGAAGTTTGGAGTGGAGAAAGAGAAGGTGGATAAAGCGGCTCATGGTTACGATTATAAAGGAGAAACTGAGAAACACCAGTCCCAGAAAGATTACTCAAAGGGTTTTGGAGGGAAGTTTGGAGTGGAGAAAGAGAAGGTGGATAAAGCGGCTCTTGGTTACGATTATAAAGGAGAAACTGAGAAACACGAGTCCCAGAAAGATTATGCAAAGGGATTTGGAGGACGGTACGGTGTGCAGGAAGACCGTATGGATAAGAGTGCAGCATCGTTCAGTGAAATGGAGTCACCGACCTCGTCTTATGAGAAGACTCTGCCACTCGAGACCTcaagTGCTGGTGCTGGTAATCTAAAGGCCCGGTTTGAGAATATGGCCAAAGCGTCCGAGGATGAGAACCGTAAAAAGGCAGAGGAGGAGCGGGCGAGACGACAAGCccgagagaaaagagagagagaggaggcacAAAATAGACAGCAggtgCAGAGCAGTAAAGAGGAGGTGAAGGAGAGGAGACTCCCGCCTGTCCCAGCGGCCGCCGAGACCCCTCAACAGGCATTCAGACCACTGCCTGAAACACCCAGAGACgaacctgaacctgaacctGTAGCTCAGgaagATGATCAGCCTGATTATGATGAGCCCCCCTCCCTGCCCCCTCGATCTGCTGACATGTTTCATGAGGAGGAGCCGAAGGATGAAGacgctcctcctcctcttcctcaccgGGACATAGATGTGGGAGGATGTGAGGCTGAGGGAGAGTATGAGGATGTAGAAGAAAATCAGAATGAGGGAGGATATGAGGAAATAGCAGCGGCTAAATGCACTACTGCAGATAACGAATACGAGGACCTTGGCAGTGGTCAGGCAGCCAGAGCTATTTATGACTATGAGGGCGGAGCGGATGACGAGATCTCCTTCATGCCTGATGACATCATCACTAACATAGAGATGGTGGACGAGGGCTGGTGGAAGGGAACCTGCCATGGTCGAACTGGTCTTTTCCCATCAAGCTTTGTGGAGCTCATGCAGTAAAGTgctgaagctccgcccacttttaaaGTCATCTCATTCTCGCTAGCTGTAGCCTGAAGGGTTGCCAAATTTGCCTGACAAAAATCCACCATTGTTtggaacaataaaacaaaataattattttttaaaagaaaatcatcgTCAGAACGCCAAACTAGTATCAAACTGTCGCTGCTtacatatgtattatttactgcAGATTTGGTTTAAGACTGATTATTTGGTCCGTTAAATCTGTTTCAtataatattttgaaatatgtattatgatttgttttcatattttttaatcagtatAGTTGGATTTATGTAATGACTGAAATGGTTAGGAACATGTCTAGAGTTCCAATCCCACTTCAACCCTGTCACTCAACTCAATATCATGCACTGAGATCATGGTCTGAACTTGCAAATCAGTGTTTTATCCACAGTGTTGCAAAGTtacaaaatgcaaatatttaaaCAGAATATAATGTGCAATGGAATggtacagtgttttaaaacagatttttcatAATAAACTGAATTCTTTCCTGGAAAATGATGTTTTAATGTCAtgaaaagaacttaataaacaataaactgtt
>XR_002650196.1
GACGGTGAGCGCACAGTTGAGGTGTGCGCAGGCTGAGCACTGAGGAGTTGAATACCAGGAGCAAGTTAAaggatattttaataattaacatcttattttaataaatctcAGCGATACAATGTGGAAGTCTGTGGTGGGCCATGATGTAAATGTGAAGGTGGCATCAGAGGGAGACGACTGGGAGACGGATCCAGATTTTGAGAATGACGTCTCGGAGCAGGAGCAGAGGTGGGGGTCCAAAACAATAGAAGGGTCCGGCCGGAAGGAGCACATCAGTGTTGCAGATCTGAGGCAAAAGGTGTCTCATGAGCATGAGGTGGTGAAGAAGAAGGAGCTGGATTCGGGCCCAAAGGCATCTTATGGATATGGAGGAAAATTTGGGGTGGAGAAAGACAGAATGGATAAGGGTGCAGTGGGACATTCCTATGTGGCTCAGGTAGATCAGCACTCTTCCCAGACGGATGCAGCAAAGGGTTTTGGAGGGAAATTCGGGGTGCAGAAGGATCGTGTAGATAAGTCTGCCATGAATTATGAATATAAGGGAGAAGTTGACCAGCATGCATCTCAGAAAGACTACGCCAAAGGGTTTGGTGGAAAGTACGGAGTGCAGAAGGAGAGAGTGGATAAAGCTGCTCTGGGTTACGACTACAAAGGAGAAACTGAGAAACACCAATCCCAGAAAGATTACTCAAAGGGTTTTGGAGGGAAGTTTGGAGTGGAGAAAGAGAAGGTGGATAAAGCGGCTCATGGTTACGATTATAAAGGAGAAACTGAGAAACACCAGTCCCAGAAAGATTACTCAAAGGGTTTTGGAGGGAAGTTTGGAGTGGAGAAAGAGAAGGTGGATAAAGCGGCTCTTGGTTACGATTATAAAGGAGAAACTGAGAAACACGAGTCCCAGAAAGATTATGCAAAGGGATTTGGAGGACGGTACGGTGTGCAGGAAGACCGTATGGATAAGAGTGCAGCATCGTTCAGTGAAATGGAGTCACCGACCTCGTCTTATGAGAAGACTCTGCCACTCGAGACCTcaagTGCTGGTGCTGGTAATCTAAAGGCCCGGTTTGAGAATATGGCCAAAGCGTCCGAGGATGAGAACCGTAAAAAGGCAGAGGAGGAGCGGGCGAGACGACAAGCccgagagaaaagagagagagaggaggcacAAAATAGACAGCAggtgCAGAGCAGTAAAGAGGAGGTGAAGGAGAGGAGACTCCCGCCTGTCCCAGCGGCCGCCGAGACCCCTCAACAGGCATTCAGACCACTGCCTGAAACACCCAGAGACgaacctgaacctgaacctGTAGCTCAGgaagATGATCAGCCTGATTATGATGAGCCCCCCTCCCTGCCCCCTCGATCTGCTGACATGTTTCATGAGGAGGAGCCGAAGGATGAAGacgctcctcctcctcttcctcaccgGGACATAGATGTGGGAGGATGTGAGGCTGAGGGAGAGTATGAGGATGTAGAAGAAAATCAGAATGAGGGAGGATATGAGGAAATAGCAGCGGCTAAATGCACTACTGCAGATAACGAATACGAGGACCTTGGCAGTGGTCAGGCAGCCAGAGCTATTTATGACTATGAGGGCGGAGCGGATGACGAGATCTCCTTCATGCCTGATGACATCATCACTAACATAGAGATGGTGGACGAGGGCTGGTGGAAGGGAACCTGCCATGGTCGAACTGGTCTTTTCCCATCAAGCTTTGTGGAGCTCATGCAGTAAAGTgctgaagctccgcccacttttaaaGTCATCTCATTCTCGCTAGCTGTAGCCTGTCACTCAACTCAATATCATGCACTGAGATCATGGTCTGAACTTGCAAATCAGTGTTTTATCCACAGTGTTGCAAAGTtacaaaatgcaaatatttaaaCAGAATATAATGTGCAATGGAATggtacagtgttttaaaacagatttttcatAATAAACTGAATTCTTTCCTGGAAAA

Function

NR:

description
src substrate cortactin-like

GO: NA

KEGG:

id description
K06106 CTTN, EMS1; cortactin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601151.2 True 2324 mRNA 0.45 16 19780663 19794325
XR_002650196.1 False 1970 misc_RNA 0.48 17 19780663 19794279

Neighbor

gene id symbol gene type direction distance location
golgb1 NA coding upstream 1200 19749310 ~ 19779463 (+)
orc5 orc5 coding upstream 52492 19715788 ~ 19728171 (+)
kmt2e kmt2e coding upstream 120143 19615610 ~ 19660520 (+)
LOC103040257 kdm7a coding upstream 182614 19569986 ~ 19598049 (+)
cd36 NA coding upstream 381443 19368514 ~ 19399220 (+)
ppfia2 ppfia2 coding downstream 44870 19839195 ~ 20054048 (+)
lin7a lin7a coding downstream 360730 20155055 ~ 20173304 (+)
rps16 rps16,LOC103382554 coding downstream 468255 20262580 ~ 20266197 (+)
ppp1r12a ppp1r12a coding downstream 505377 20299702 ~ 20397967 (+)
pawr LOC108434155,LOC108434154 coding downstream 623187 20417512 ~ 20497661 (+)
G65306 NA non-coding upstream 33472 19743884 ~ 19747191 (+)
G65301 NA non-coding upstream 49784 19730477 ~ 19730879 (+)
G65183 NA non-coding upstream 168791 19610912 ~ 19611872 (+)
G65182 NA non-coding upstream 170142 19609465 ~ 19610521 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding upstream 179025 19600888 ~ 19601638 (+)
G65310 NA non-coding downstream 8850 19803175 ~ 19805102 (+)
G65311 NA non-coding downstream 10301 19804626 ~ 19806600 (+)
G65404 NA non-coding downstream 356908 20151233 ~ 20151557 (+)
G65405 NA non-coding downstream 372822 20167147 ~ 20167452 (+)
G65403 NA non-coding downstream 379045 20173370 ~ 20174743 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 439784 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 501146 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 502592 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1157164 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 2060751 17690209 ~ 17719912 (+)
G65565 NA other downstream 1162810 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1229850 21024175 ~ 21024574 (+)
agbl5 NA other downstream 1646084 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1835462 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 3145230 22939555 ~ 22949199 (+)

Expression


Co-expression Network