tprkb (tprkb)


Basic Information

Item Value
gene id tprkb
gene name tprkb
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11986914 ~ 11990505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601784.2
ACATCGCGTTTAAACGTATTAGAcatagccagctagctactTTGATACTCGGAACGTTAGTTATCAAGCTAGCGTAGCACAGTGCTGAGGgtgttacaatattattgtccTGGTCTCGTGCACTCGTGTAGTAAGCTAGGGTTAGCTAGCTGTAGTTTGGTTAGTTTGGTAAACCaggagtgtttttattttatttaaggctGGAGATGCAGTTAACTCAGGATTTAGAGCTCTTCCCCGATCAGTCAGTCACTCAGCTGCTGTTCAGAGATGTGAAAAACTGCGCAGAGCTGAGAAAGATGGCAATGGAGGGACAGACCGGAGCTCTGATTAACCCCAGCATGGTTGTGGACCTGTTCCAGACTCTGGTAGCAGCAAATAAGGCAGTTCATTTACAGAAGGTTGGGAAAATGAAGACGAGGAGTTTGTACTCTGAGATCATCTTTAGTCTCTCACCCACCAACAACatctCTGAGGCATTTAGGAGGTTTGGAGTCTCAGACAGTGACAGCGCCGTCCTTGTTGTCCTCGTTCATAATAAAGAGGACATTTTCAATAAGGATGATGTCACGTCTAAGGTGGATGGCCAGCAGATTCCAGCTGATCAGATTTCCACTCTCAGTGATATGGCCAAGATTAAAAAGCTTTACAAAGTCACCCCGCAGGAGGAGAAGTGTGGAACTGTTCTGGATGCTGCTGTTCTCAGAATGGCCGCTAAGGAAGTTGTATAGCTTAGGGGACACTAACAggacacacactctttaaaaagggagagaaaggtCTTCTGGAGGGATACCACAGATTAATTATTTTgggtttcttaaaaaatatatatattcagaaaGATTCTCTAAAAAagcaaaagtggttcttctgtcATCACCTGGATAATTTTTTGCCTTcttagtttttaatttatttgtttgtgtttaaatatctatagtaccttttaaaaataaatctgattataAGCA

Function

symbol description
tprkb Predicted to be involved in tRNA threonylcarbamoyladenosine modification and telomere maintenance via recombination. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 5. Orthologous to human TPRKB (TP53RK binding protein).

NR:

description
EKC/KEOPS complex subunit TPRKB

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K15901 CGI121, TPRKB; EKC/KEOPS complex subunit CGI121/TPRKB

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601784.2 True 974 mRNA 0.41 5 11986914 11990505

Neighbor

gene id symbol gene type direction distance location
trmu trmu,LOC102792203 coding downstream 8155 11970797 ~ 11978759 (-)
LOC103026753 LOC108427079 coding downstream 21107 11824846 ~ 11965807 (-)
LOC111192951 LOC108427081 coding downstream 181337 11780555 ~ 11805577 (-)
LOC103026034 gramd4,gramd4a,LOC108427081,LOC107721158 coding downstream 207065 11724467 ~ 11779849 (-)
zbed4 zbed4,LOC107735570 coding downstream 1553460 10424589 ~ 10433454 (-)
LOC103023221 cpne8,LOC108427072,LOC108279828,LOC104935575 coding upstream 38809 12029314 ~ 12246559 (-)
LOC103029962 LOC108427070,LOC108279892 coding upstream 264800 12255305 ~ 12320325 (-)
LOC103029428 abcd2,LOC108427069,LOC107689723,LOC107566844,LOC107689245,LOC106575983 coding upstream 339528 12330033 ~ 12359741 (-)
LOC103033667 NA coding upstream 693721 12684226 ~ 12689035 (-)
LOC103024791 parp11,LOC108280019,LOC107726831,LOC107597042,LOC107689238,LOC105020367,LOC102790985,LOC107748476 coding upstream 701085 12691590 ~ 12699482 (-)
G63384 NA non-coding downstream 3354 11983296 ~ 11983560 (-)
G63320 NA non-coding downstream 163837 11817096 ~ 11823077 (-)
G63265 NA non-coding downstream 351399 11630642 ~ 11635515 (-)
G63259 NA non-coding downstream 1328490 10658204 ~ 10658424 (-)
G63255 NA non-coding downstream 1356454 10630129 ~ 10630460 (-)
G63519 NA non-coding upstream 345114 12335619 ~ 12336210 (-)
G63538 LOC108427067 non-coding upstream 537384 12527889 ~ 12529641 (-)
G63540 NA non-coding upstream 544460 12534965 ~ 12538377 (-)
G63552 NA non-coding upstream 592272 12582777 ~ 12587477 (-)
G63607 NA non-coding upstream 809960 12800465 ~ 12803555 (-)
G63217 NA other downstream 1575683 10314799 ~ 10411231 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 2364126 9618661 ~ 9622788 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 3813098 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 4367482 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 5127244 6787342 ~ 6859670 (-)
G63516 NA other upstream 330050 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 374963 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 815466 12805971 ~ 13027498 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 1850688 13841193 ~ 13887868 (-)
G64034 NA other upstream 2794816 14785321 ~ 14786149 (-)

Expression


Co-expression Network