LOC103023565 (fam19a2,LOC103023565,LOC108411383,LOC108248567,LOC106529719,LOC103364248)


Basic Information

Item Value
gene id LOC103023565
gene name fam19a2,LOC103023565,LOC108411383,LOC108248567,LOC106529719,LOC103364248
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24026461 ~ 24117713 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602945.2
AGCTCAGATCTGCAGGGCTGCTcccgcgcgcgcgcacacacgcacacacacaccgctgaGGGGAAGAAGCGCACCCGTGTCGGACTGCGAGCTCCTCCGCTGGATAACCGCGTGTTTCCGCACTGAGAGCGATGTGACCGCGGCCATGCGCCCCTGACCTGCCGGACTATGAGCAGAACCTCGCGGCAGAAGACTGGCCAGCCTCTGGAGGATTCCATGGACTAGTCCCCGGGAGCGCGCAGgaTGTTTAAGAAACTCAAGCAGAAGGCTTTTACACAAGTTCTGCTGCTCATCTGCATGGTCTCACTGTTGCTATCACCAACAAATGCTGCAGGACATGCTGCAGTTCACCATGTCAGAACGGGAACATGTGAGGTTGTAGCATTACACCGATGCTGCAATAAGAACAAGATTGAGGAACGCTCTCAGACAGTCAAATGCTCCTGCTTTCCAGGACAAGTGGCTGGGACCACCCGAGCAGCCCCCTCCTGCGTAGATGCCTCCATAGTAGAGCAGAAGTGGTGGTGTCAGATGCACCCATGCCTTGATGGAGAAGAGTGTAAGGTTCTGCCTGACCTTAAAGGGTGGAGCTGTGCCACAGGGAACAAGATCAAGACGACAAAGATCTCTGCTGACCGGGACCAGCTTTGGTAACCGCTGGAAACCAGATACAGGTTGACTGAATTGAAGTCTCCTGCTCCCTGCCTCTGGGTTTGATCTGTGAGGAGTTAAAGACTGATCCCCACTGGGCCGCTTTGTATCGGCACAACTTTCACGAGTATCAGAGTGGAGAAGGTTTCTGACTCTGCGTACAGTGAGCACATCCGGACGCTGCTGTCTGCTTCACCCCCACATCTTTGTACAGCTTGTAGTGGATTACTGCAGTAAATAGCGCTTACAGTGTTGCTCGGACTGAAGGCTCAGCTCCAGACTTTCCTTTCTGTGGATCCAGAGCATGACAGGGTGAAAAGGTGCAGCCACTATTTTGCCTCAAGGAACAAGTAATTTAGTCAAGCTGATGCACCAGTTATAGCAATTGGACTACAATGTAAGCACTGTGTAGAGCTAAGGTATGCCGGAGAATATATTTATGTGCTTTGTATTGTAGGTAAAAAGGGTCTAGAGAAATTCCGACCTGAATGTCCATGTAACCTTATGTTACGTTATGCAACTTTAATTCTATTAATTCTATTGtattaaataacacattaagACTAATGCAGGGTCATAGTGGAAGTACAATTTagttatgttctttttttatatatgtataaatactcATGCCAATGCTTTCCCATATGTGTAAGAAACAAAAATGATCATACAATAAACCATGATTGTCTTTAAA
>XM_015602946.2
GCTcccgcgcgcgcgcacacacgcacacacacaccgctgaGGGGAAGAAGCGCACCCGTGTCGGACTGCGAGCTCCTCCGCTGGATAACCGCGTGTTTCCGCACTGAGAGCGATGTGACCGCGGCCATGCGCCCCTGACCTGCCGGACTATGAGCAGAACCTCGCGGCAGAAGACTGGCCAGCCTCTGGAGGATTCCATGGACTAGTCCCCGGGAGCGCGCAGgaTGTTTAAGAAACTCAAGCAGAAGGCTTTTACACAAGTTCTGCTGCTCATCTGCATGGTCTCACTGTTGCTATCACCAACAAATGCTGCAGGACATGCTGTTCACCATGTCAGAACGGGAACATGTGAGGTTGTAGCATTACACCGATGCTGCAATAAGAACAAGATTGAGGAACGCTCTCAGACAGTCAAATGCTCCTGCTTTCCAGGACAAGTGGCTGGGACCACCCGAGCAGCCCCCTCCTGCGTAGATGCCTCCATAGTAGAGCAGAAGTGGTGGTGTCAGATGCACCCATGCCTTGATGGAGAAGAGTGTAAGGTTCTGCCTGACCTTAAAGGGTGGAGCTGTGCCACAGGGAACAAGATCAAGACGACAAAGATCTCTGCTGACCGGGACCAGCTTTGGTAACCGCTGGAAACCAGATACAGGTTGACTGAATTGAAGTCTCCTGCTCCCTGCCTCTGGGTTTGATCTGTGAGGAGTTAAAGACTGATCCCCACTGGGCCGCTTTGTATCGGCACAACTTTCACGAGTATCAGAGTGGAGAAGGTTTCTGACTCTGCGTACAGTGAGCACATCCGGACGCTGCTGTCTGCTTCACCCCCACATCTTTGTACAGCTTGTAGTGGATTACTGCAGTAAATAGCGCTTACAGTGTTGCTCGGACTGAAGGCTCAGCTCCAGACTTTCCTTTCTGTGGATCCAGAGCATGACAGGGTGAAAAGGTGCAGCCACTATTTTGCCTCAAGGAACAAGTAATTTAGTCAAGCTGATGCACCAGTTATAGCAATTGGACTACAATGTAAGCACTGTGTAGAGCTAAGGTATGCCGGAGAATATATTTATGTGCTTTGTATTGTAGGTAAAAAGGGTCTAGAGAAATTCCGACCTGAATGTCCATGTAACCTTATGTTACGTTATGCAACTTTAATTCTATTAATTCTATTGtattaaataacacattaagACTAATGCAGGGTCATAGTGGAAGTACAATTTagttatgttctttttttatatatgtataaatactcATGCCAATGCTTTCCCATATGTGTAAGAAACAAAAATGATCATACAATAAACCATGATTGTCTTTAAA

Function

NR:

description
protein FAM19A2-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602945.2 True 1348 mRNA 0.48 6 24026461 24117713
XM_015602946.2 False 1326 mRNA 0.48 6 24026480 24117713

Neighbor

gene id symbol gene type direction distance location
etv6 etv6 coding upstream 72741 23916306 ~ 23953720 (+)
rerg rerg,LOC107662225,LOC107669035 coding upstream 478204 23451563 ~ 23548257 (+)
lrp6 lrp6,LOC100705426 coding upstream 941417 23020384 ~ 23085044 (+)
LOC103025638 mansc1 coding upstream 1013688 23004755 ~ 23012773 (+)
bcap29 bcap29 coding upstream 1728782 22284747 ~ 22297679 (+)
lrig3 lrig3,LOC104942525 coding downstream 179204 24296917 ~ 24320066 (+)
LOC111192915 NA coding downstream 341690 24459403 ~ 24461001 (+)
LOC103034593 LOC108442311 coding downstream 392776 24510489 ~ 24517356 (+)
LOC103033942 LOC103033942,LOC108442313 coding downstream 437888 24555601 ~ 24559622 (+)
snupn snupn,LOC107673280,LOC107738646 coding downstream 1260724 25378437 ~ 25387120 (+)
G66389 NA non-coding upstream 48515 23976240 ~ 23977946 (+)
G66382 NA non-coding upstream 114250 23911828 ~ 23912211 (+)
G66353 NA non-coding upstream 205484 23818073 ~ 23820977 (+)
LOC111192880 NA non-coding upstream 426870 23594228 ~ 23599591 (+)
G66338 NA non-coding upstream 431347 23594861 ~ 23595114 (+)
G66472 NA non-coding downstream 20192 24137905 ~ 24138185 (+)
G66476 NA non-coding downstream 68421 24186134 ~ 24186383 (+)
G66480 slc16a7 non-coding downstream 105292 24223005 ~ 24231186 (+)
G66488 NA non-coding downstream 206097 24323810 ~ 24324032 (+)
G66514 NA non-coding downstream 267206 24384919 ~ 24389774 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other upstream 306367 23698152 ~ 23720094 (+)
G66303 NA other upstream 542528 23483333 ~ 23483933 (+)
G66296 NA other upstream 581784 23444174 ~ 23444677 (+)
eps8 eps8 other upstream 703100 23222514 ~ 23323361 (+)
crebl2 crebl2,LOC107707978 other upstream 888450 23131080 ~ 23138011 (+)
rpap3 rpap3 other downstream 249779 24367492 ~ 24383022 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other downstream 400909 24518622 ~ 24552340 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other downstream 481453 24599166 ~ 24684580 (+)
cspg4 cspg4 other downstream 1071472 25189185 ~ 25300875 (+)
LOC111192916 NA other downstream 1962739 26080452 ~ 26092119 (+)

Expression


Co-expression Network