LOC103047366 (LOC108415391)


Basic Information

Item Value
gene id LOC103047366
gene name LOC108415391
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16218828 ~ 16314999 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604721.2
agagatagaaacaaaaaacgctgactcccacactcacacacatacactcacacactctctctcttacacacacactcacacacacatacactgtatTGGGATCCAGTCAGTAGCACCCTGCCAGGTCCAGTCTGTTGGACAGcttgtctttttcttctttttttttttctctttttggctatttttgcttttttacacCTGAGCAGAAGAGTGTGAGAAGAGGGACACTGATGAGACACGTCGCTCAGAACTTGAGGGAGATCcctggtggtgtgtgtgtgactgtgtgtgccACTGCCAGCCGTAGGTGGAGGGGTCCCAGGGGTGCCTCTCGCGCTCAGCCAGGATGGGCTGTAACCTGTGCACCTTGCAGAAGAGGGAGGAACATTACAAACTGCTGTACGAGATCGCTCAGGTAAATGGGCGAGACTTTTCTAAAACTGGACATGAAGTGGCTGTGGAAGCGATGCGGAAGGACCCCATCGTTGTCCAGGTATTACGGCGGGGTCCCACAGCTAGTACCCATGGCAACCTGcaggaggtgtgtgtggtggatgTGTGTACTCAGACAGACATCACATTCGAGCACATCATGGCTCTGGCCAAAATGAGACCAGCTACTCCACCAGTGCCTGACATCTGCCCTTTTCTGCTGTCGGACAGCTGTCACTCCATCCAGACAATGGAACACGAGTACTTTGAATGTCCGGAGTACTTGTCCAACCCGCGGACTGAAGTGGAAAGGACGGATGAGTTTGAGTATGAGGAGGTTGAGCTGTGTCGTCTGAACAGTCAGGAGAAGCTGGGGCTTACTCTGTGCTACAGGACGGATGATGAGGAAGACACGGCTATCTACGTCAGTCAGGTCGGCCCAAACAGCATAGCTGCCAGAGATGGACGCATCAGAGAGGGAGATCGAATTTTGCAGataaATGGCCAAGATGTGCAGGACAGGGAGGAAGCTGTGGCTCTTCTGTCTAATGAAGACACCCGGAACATTGTGTTGTTGGTTACCAGACCAGAGGCACAGATGGATGACGgctggttggatgaagaacacCATGACTTTTTGGAAGAGCTGAAGATGGACATACTGGAGCAACGAAGGAAAGAGGACATATACCAGTCGGCCAACTGTGATAAGCAAtccAAGCTGATAGAGGAGGACAAAGCCACCTGCTCCTCAACCCTGCAGGATAAAGACAGCGGAATGGGATATGGGGGTGAGGAGGACTCCGAAACTCGCGTTCAACTAAGGACTCCAAAGCGTATGCAGCACCAGTGGGAGACAGAGACTCCACATCTGGTTTCTACAGACTCCAAaggctcagccaatcaggagcTGAGCCAAGACTGTAAGCATGTGGAAACTGGAGTGGAATACGACCATTTCCAGCAACTTCTGCAACTGAAGTGCCAGATCCGGAACGAAGGCGAGTGTGGCCTGGTGTACCGGCGGAGTAGCACCATCGAATGCAGCTTGACGGAGCAGGCCAGCAGAAGAGGGGTGGAGCGTGAGTTGCGCATGCTGAACGATGAGCTGCGCAGCATTGAACGCAAGTGCCAGAGCATCATGCAGGCCCACCAGTTGCGGAGAAGCAAGCGCGACTCTCCACGAACAGACAAGGAAGGCAGGTCTCGCAGGGCCAAGTTGGAGGACATCAATGAGCAGCCTGAGAGGATGCAAAACGAGAAGCTGAGGGACAAGGACAGCTCAAGTGCGTACAACACAGCAGAAAGCTCACGCTCCACCCCTTTAGGCACTGAGTGTTCACCTGATCACTCCCTGCAAAGGCGCATTAACCAGACTAATCAGAGGAACTTGCGCAGCAGCAATGCAATTCATGCCCATGGGGTTTCTTGTGAAAGTCCGTTAACCTCCCACAGTTGCTCTGCTTACAGTCACACATTACCTTCTCACAGTACCTTCTCTTTAGGTAACTCTACATATACCCACACGTCTCAAGTTCCCAACTCCACTCCACCACTTCAGACCCCCATTACTAGTCCTGGATCACAAGGTCCAGGGCAAGCTCTTTCAAGCAGCCTGGAGCAGAGTCCAAGCAACCCATCCGAGTCAGACCCAGCCCTTCCAGCTGATGACGAGAGGCACGACCGGAAGAAGAGTCAGAGTCAAGTGGCGCAAGGACGCATCCATCCTTCTCCGTACCATTCAAACACAAGCCACTATCAGGGCTACATGCAACTCCTGCAGCAGCACTCGTCCTCCTCTTTGGAATACTCCCAGAGCCAGCTCAGCCTGCTTAGCCTCCGCGGTCGGCCTTCCGCGCCTCAGCCAGGTCGGCTAGAGTGGAAGGTAAAGGTGAGAGCCGACGGGACCAAGTACGTTGCCCGCCGACCTGCCCGAGACCGGATCCTCCGAGAGAGGGCACTAAGGATCCGGGAAGAGCGCAGTGGCGGCATGACCACAGACGATGATGCCGCAAGTGAGCTGAAGATGGGACGCTATTGGAGCAAGGAGGAACGCAAGCAGCAGCTGGCGCGAGCCAGGGAGCAGCGCCGGCGCCGGGAGTTCATGCAGCGCAGCCGACTGGAGTGCTTGAGAGAGACTGGTGGAACGTCCAGTGCTGAGGTCAGCATCCTGGAACTGAGCCACAAGAAGATGCTGAAAAAGCGCAACCGCAAGATCTTAGACAATTGGATGACCATTCAGGAGCTGATGAGTCATGGGGCCAGGGCTCCTGAGGGCACCAAAGTTCACAATGCCTTCCTGTCTGTCACAACCGTGTAGTCGATCTTTTGTACTAAGATCCTTCCAAATGACAGTTTTATATTGTGCAAAAGGAggtatttttcatgttttgtatGATGTAAAAAAACACCTTGTAAAGACTTTTCACTCCAAATGGGCTTTGTTTTAAATCTGACATAACTGTGATTGAATGTTccagatttttatatatatatatattagctggAAGTATTTGGACCACTTCAGacctctctgtcttttttcctACAAGTGCATAAGACTGCCAGTTTAGCTAAAGTGTTTGGTGTCAAACACTACTACTGTACAGCGTTCGAACGGCTTAACCGTTACTGCCCTTTATAAAGTCCTGTGTGTTTCAAAGTACTTGAATTTTCTCTATGGTTTATTATGCAGCAGCTATTCTTTCCACTCTAAAATGTGCTGTAAATAGACACTTTTGGATCATTGTTACTTTTAAATAAGTTACGTTCCGTTCTgaactttacttatttaaacTCAAACCTGGATggtttacaaatacaaatcaaaagcttttttttttcacatggtaTCTGACGGTACCATTAACATGCAGTATTTATGATCATTTTCATTGTTCCATTGTAGCTACTGTACCTTAataatattgcagtatattttatGTCTGGCGTTTCTCTCACTATACCTCATTGCACCTCTGATGCCAAATACAGTAATTAGCTGTATTCCTGAATGAGGGTAATGACATGTTTCTGAAGGTTTTTAGCGAGTCTGAATTTTATCACTGTTGTTGTGCCTAAGGATCTGGTGCTTTCCACTGTCTGCAATGACTCATTTTTTTACTATACATTGTGGTGAACAAATGTGCATTTTTGCTAACTTATTGATCCTCTTCAAGTAGTTCTTTCCAGTGTAGCCGGCCACTTTGCAGCCAGGTCAACATGTTCTAAGTGTGCTA

Function

NR:

description
PREDICTED: PDZ domain-containing RING finger protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604721.2 True 3671 mRNA 0.49 8 16218828 16314999

Neighbor

gene id symbol gene type direction distance location
LOC103046856 LOC108432562,LOC108279529,LOC107757284,LOC107581848 coding upstream 77429 16112859 ~ 16141399 (+)
LOC103027800 LOC108432561 coding upstream 117304 15998201 ~ 16101524 (+)
LOC103046551 LOC108432559 coding upstream 264896 15923726 ~ 15953932 (+)
ccdc87 NA coding upstream 295766 15904342 ~ 15923062 (+)
LOC111192874 NA coding upstream 647623 15564017 ~ 15571205 (+)
LOC103026270 zmp:0000000711,LOC108411497,LOC108275404 coding downstream 300572 16615571 ~ 16651658 (+)
LOC103042039 ern1,LOC102793659 coding downstream 402053 16717052 ~ 16764567 (+)
LOC103041732 NA coding downstream 453411 16768410 ~ 16779685 (+)
LOC103035087 mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907 coding downstream 468914 16783913 ~ 16811230 (+)
LOC111192909 si:ch73-374l24.1,LOC108437159,LOC108259727,LOC107556610,LOC107698783 coding downstream 994066 17309065 ~ 17556553 (+)
G64279 NA non-coding upstream 51450 16167064 ~ 16167378 (+)
G64237 NA non-coding upstream 68854 16149768 ~ 16149974 (+)
G64233 NA non-coding upstream 74110 16144285 ~ 16144718 (+)
G64205 NA non-coding upstream 262612 15956009 ~ 15956216 (+)
G64159 NA non-coding upstream 469255 15745081 ~ 15749573 (+)
G64292 NA non-coding downstream 45904 16360903 ~ 16368394 (+)
G64291 NA non-coding downstream 62661 16377660 ~ 16432412 (+)
G64362 NA non-coding downstream 176187 16491186 ~ 16532783 (+)
G64393 NA non-coding downstream 293858 16608857 ~ 16609213 (+)
G64403 NA non-coding downstream 380941 16695940 ~ 16707096 (+)
G64015 NA other upstream 1473746 14744735 ~ 14745082 (+)
gata3 gata3,LOC107555822 other upstream 1976594 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 3057461 13156226 ~ 13161367 (+)
G63432 NA other upstream 3749926 12468050 ~ 12468902 (+)
G63051 NA other upstream 6568741 9646579 ~ 9650087 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 80327 16395326 ~ 16426623 (+)
G64289 NA other downstream 124221 16439220 ~ 16442449 (+)
G64431 NA other downstream 438044 16753043 ~ 16753560 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 518291 16833290 ~ 16888195 (+)
G64449 NA other downstream 558088 16873087 ~ 16875941 (+)

Expression


Co-expression Network