cct2 (cct2,tcpb)


Basic Information

Item Value
gene id cct2
gene name cct2,tcpb
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8389780 ~ 8400903 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605568.2
tcttttattttgaaaggtcTCCGCCGGCCGCTCCTGTTACTGCCCCGGTTTTATCGTTGCAGGGTTCCTGGTCTCGGTGCGCGTGCGGCTTAAAACAACCCAGAGCAGCCATGGCGTCCATGTCAATGGCCCCAGTGAACATCTTCAAGCATGGAGCTGATGAGGAGAAAGCAGAAACTGCTCGACTGTCCTCCTTCATTGGCGCCATTGCTATCGGGGATTTAGTGAAGAGCACTCTTGGACCGAAAGGAATGGACAAAATTCTCCTGGGTGGTGGTCGGGAAGGTTCTGTTACAGTGACTAACGACGGTGCAACCATTCTGAAAGCTATTGGTGTGGATAACCCTGCCGCCAAAGTGCTGGTTGATATGTCCAAGGTCCAGGATGATGAAGTTGGGGATGGTACTACATCTGTGACAGTGCTGGCAGCTGAGCTGCTCAGGGAAGCAGAGCTCCTTATTGCCAAGAAGATCCATCCTCAGATCATCATCTCTGGGTGGAGGAAAGCAACCCAGGCTGCACGTGAAGCTCTGAGGGAGTCAGCAGTGGACCATGGTAACGACGAGGTGAAATTCCAAGAGGATCTGCTGAACATTTCCCGCACCACTCTGTCATCAAAACTGCTTACTCATCATAAAGACCACTTTGCCAAGCTGGCTGTGGAGGCCGTGCTTAGGCTAAAGGGATCTGGCAACCTGGAGGCCATCCATGTCATCCAGAAGCTGGGAGGCAGCCTTATAGACTCTTACCTGGATGAAgGTTTTCTACTTGACAAGAAAATTGGTGTCAACCAGCCTAAGAGGCTTGAGAATGTAAATATCCTCATTGCTAACACTGGCATGGACACAGACAAGATCAAGATTTTTGGCTCCAGAGTGCGCGTGGACTCCACAGCAAAAGTGGCAGAGATTGAGCttgcagagaaagagaaaatgaaggAGAAAGTGGAGCGCATTCTGAAGCATGGCATCAACTGCTTCATCAACAGGCAGCTGATCTATAACTACCCTGAGCAGCTCTTTGCAGCTGCAGGCGTCATGGCCATTGAGCATGCAGACTTCGTTGGAGTGGAGAGGCTGGCACTGGTTACAGGGGGAGAGATCACATCTACCTTTGACCATCCTGAGCTGGTGAAGCTTGGCCACTGTAAACTGATTGAGGAGGTGATGATCGGAGAGGACACTCTTATCCGTTTCTCTGGAGTGGCTATGGGTGAAGCCTGCACGATCGTGCTCCGCGGGGCGACTCAGCAGATCCTGGATGAGGCTGAGCGTTCTCTCCAtgatgctctgtgtgtgttggcTCAAACCGTTAAAGAGACTCGCACAGTCTATGGAGGAGGCTGCTCAGAGATGTTAATGGCTAAAGTGGTTACAGACTTGGCCAACAGAACCCCAGGCAAAGAAGCTGTGGCCATGGAGTCCTTCGCCAAAGCACTGAGAATGCTACCAACCATTATTGCAGATAATGCAGGATACGACAGCGCAGACCTTGTGGCTCAGCTGAGAGCTGCTCACCAGGAGAACAAGACCACTTTTGGCTTGGACATGACACAGGGGACGATCGGTGACATGGCAGAACTGGGCATCACAGAGAGCTTCCAGGTGAAGAGGCAGGTAGTGCTGAGTGCTGCCGAAGCCGCTGAGATGATCCTCCGTGTGGACGACATCATTAAGGCAGCACCCAGgAAACGAGTTCCAGACCACCATCCTTGTTAAGGCTGAGTGAGGAGAAGGAGAACAATTGGAGTAATAGTGGGGAACAGCCTGTGTATTTATTACCTGAGACAGCCTCCATTCTTCTTCGGTTTGTCTGCTTTCAAGTCACTGTGCTGTTACTGTGTTAGCACTGCAAAGGCTGTCTTTGTGTCATGCCTGTACACTTCCAAAATGACTGAGgcgttttgtttttgttttgtttattcaaaaaaataaatctttcgAGCGGGTCTT

Function

symbol description
cct2 Predicted to enable ATP binding activity and unfolded protein binding activity. Acts upstream of or within Kupffer's vesicle development and melanosome transport. Predicted to be located in cytosol. Predicted to be part of chaperonin-containing T-complex. Orthologous to human CCT2 (chaperonin containing TCP1 subunit 2).
tcpb toxin coregulated pilus biosynthesis protein B

NR:

description
T-complex protein 1 subunit beta

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0006457 protein folding biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09494 CCT2; T-complex protein 1 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605568.2 True 1952 mRNA 0.50 16 8389780 8400903

Neighbor

gene id symbol gene type direction distance location
LOC103036771 LOC103036771,LOC108425308 coding downstream 505 8381497 ~ 8389275 (-)
dgki dgki,LOC108425370 coding downstream 28472 8269640 ~ 8361308 (-)
LOC111192944 NA coding downstream 126031 8253845 ~ 8263749 (-)
LOC103043012 NA coding downstream 136871 8224651 ~ 8252909 (-)
LOC103036167 rassf3,LOC106576047 coding downstream 175706 8175026 ~ 8214074 (-)
terf2 NA coding upstream 14959 8415862 ~ 8444288 (-)
arfgap3 arfgap3,LOC108279714 coding upstream 46407 8447310 ~ 8462554 (-)
LOC103038884 pacsin2,LOC103038884,LOC108279716 coding upstream 63223 8464126 ~ 8496393 (-)
ttll1 ttll1,LOC102779306 coding upstream 97321 8498224 ~ 8507579 (-)
LOC103041774 NA coding upstream 141567 8542470 ~ 8553565 (-)
G62832 NA non-coding downstream 56457 8332508 ~ 8333323 (-)
G62821 NA non-coding downstream 109786 8277685 ~ 8279994 (-)
G62748 NA non-coding downstream 438346 7949835 ~ 7951434 (-)
G62732 NA non-coding downstream 578998 7810553 ~ 7810782 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding downstream 765735 7620926 ~ 7624045 (-)
G62858 NA non-coding upstream 32812 8433715 ~ 8434396 (-)
G62907 NA non-coding upstream 245982 8646885 ~ 8647296 (-)
G62950 NA non-coding upstream 619586 9020489 ~ 9020985 (-)
G63034 NA non-coding upstream 1005502 9406405 ~ 9409548 (-)
LOC103022044 NA non-coding upstream 1014140 9415043 ~ 9418822 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 215964 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 770348 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1530110 6787342 ~ 6859670 (-)
G62484 NA other downstream 1651832 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1217758 9618661 ~ 9622788 (-)
G63217 NA other upstream 1913896 10314799 ~ 10411231 (-)
G63516 NA other upstream 3919652 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 3964565 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 4405068 12805971 ~ 13027498 (-)

Expression


Co-expression Network