LOC107197608 (LOC107197608,LOC108425361)


Basic Information

Item Value
gene id LOC107197608
gene name LOC107197608,LOC108425361
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8510515 ~ 8516534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605601.2
CAGCCACGCATGCGCAGTAGTTTCCCCTGCCTTCAGCTCatagctaacatagctagctagcaaatGAATTCAAGGAACGACTGTAAAACAAGAGTTTGATCAGGAATTTGACTTAAATCTTCAAAATACAGCACGATGAgttCTGCCCCTCCAATCTCATCTCTACGCCTCTTGGTTCCACCCTTGCGCCTGATGTCCGCTTTCATGTGGCAGATTGCCCAACGTCAGAAAGTGGAACACTATGGAAAGCTGGAAGAGTTTGTGTCTGTGGTCACAAAGCTGGTTCCTGAGGTGTTGACCAGCAGACAGAAGGCTACACTGATAATGGGGCTGAGAGCAAAAATGATTCTGGAAATGTGTCGAGATGAAATGCCTGCAGACCTTCAGACAGTGAAGTCGCACATACACAGGATCCAGGCCTCTCATTCGTCAAAGggCAGTGATTCGGAAGTGGAGAGCTTGCAGGCAAACCTTCTCAAGCTTGTGCTCTGTCTGCTCGAAGACTCTGCCAAAAAGGAGCACTTCTTTCAGGAAGTGTTCCCAGTTGAGTATGGTCCTGAGTTTGACAAAGCACTACAGGTCCTGGTTGGTCATTTTCTCTCCAGACTGGAACAGCTGCTGCCTGTGCCAAATTTTAAACAGACATCTTCTATGCTCAGTGCCTGCCAGTGGGAattgaatgagtgtgtggagtcTGTTTGTAGAACAGATAATTTGCTACCCTTGATGCGAAGCAACATTTGTGGAACTTTGGAGGATAATGCTCTCCCATCGATAGTGGAGGACAGAATCATCTCCTCGCTGTCTCACTCTCCCCTGATGGACACAGTTATATCCAGCCAGGGTAACGAGCAGTCGGACGCACAGCCTCCCCTCAGCTCAGACATCCCTGTCCAGACATCTCAGGATGTGGAGCAGGAACAGGAAGCGGATGATCCTGGTGACCACGATGAATTACTTGCTTCAGGTTTTGAAGAAACTGTATCCACAGAACAACCCAACACTGCTCAGTCTTTAGCAGCCAATGTGGAATCAGCAGAGGAAGATACAGAGAGTCAGCACTTTGAAATAGAGATCACGGAGGCTATTAAGAATTTGGAAAAAGAGACCGAAATGCCAACTCAAGTGAATGCTCCGATACCATGTACCGAAATGTCAGAAGTTAACCAAGAGCTGGAGAATGCAGAAGAATTGGAGATTGTAACTTCTGAACCTTCTCTGGCTTCAGAAGAAATTACAACTTCTCAGTCTAAAGTCCAGATCACCAGAGTCCCACTTACAAAAATCACCCTGCCTCTGGAGCTTTCACGTTCATCCAAGGATGCTCACAACAatGAAGACCCTGAATCATCTGATTCTGCCCAGGACCCCAGCAGTCCTTCTGCTTCTGTCTCTTCTGGAAATACACCTTTCAAAAGTTCTCTACTCTTTAGCAGGAGACTTCACAAGTGTCCTCGGTGCAGCAAGCGTTTTGCTTTCCGCTCTGAGCTTCTTAAACACCAGCAGACACACACCGGCAGCACAGAATCCCCAAAGTGCTGTGAATGTGGCCAGATATTTAAAGATGCAAAGCAGCTGGCTCTCCACCGACAGAAGAACTGCAAGGCGAGGACATACAAGTGCATCAAGTGTGGAGCAGGCTTTAAGTCTCTGTCTAGCTGGTACACCCACCAGCGGGTTCACAAAGCGGTGTGCATGCACAAATGCCCTGAATGTGGGAAAGTGTTCCGCAGTCTAACAGGGCTGGTGTCTCACAGGCGAGAGCATGCGGCCTCTATGGTAAATGGAGGTTATACCTGTGACAAGTGTGATTTGACTTTTGGGTCGTACCGGGCCAGAGTGATGCACCAAAAGAAGCATGAGGTCAAAGCTCAGGCTCCTCCACGAAAAGAGCGGGAGCCGGGCAAGTGCCGCTTTTGCGAGGAGACCTTTATCATGGTCAGCGACTTGAGGGTCCACTTGAAAACCCACCCTGAGTACAGGCCACATCAGTGCGACCAGTGCGGGAAGTGCTTTGCGTTGcgcagcagtctgttagcccaTCTTTCCAATCATACTGGAGAAAAGCCGCTGCTTTGTACCCAGTGTGGAAAGcgcttttttaataaaatccagctCAAATCGCACATGAGGTGCCATTCAGGCGAAAGGCCACACATGTGCCCTCACTGTGGAAAGTGCTTCTCGCTGCTAGGCAACTTGAACATCCATGTGAGAATACATACGGGAGAAAAGCCCTATGTGTGCCACCAGTGTGGAAAAGGCTTCATATCGGCAGGAGACTTGCAGGTGCACCAGCGCAGCCACACAGGCGAGAAGCCCTACTTCTGCAACGTCTGTGAGAAGAGGTTTGTAGTGTCCAGTCACCTGACTGCGCACAAGCGCGTCCACACGGGCGAGCGGCCCTTTTGCTGCACCCAGTGCGGGAAGACCTTCGTCAGGAGATATGACTGGAAcaaacacatgtacacacactcagGGATCAAACCCTACCCCTGCAACATCTGCCAAAAGAGTTACACGCGTCGCACGCATTTAAACAGGCACATGCAAAGCCACGCTGCCCATCTGCAATGATTCAGTGTCCGTCTGATGGACTGCTATTTATGCAAGTCGCACTAGAAGCTGTTCTAATAAGCAGAAGAAGTGTTTACTTGAAGGAAGGACATTCCAGTGAAAGGTTTCAGAAGCACATTTGCCCCTATGTTGTGTTGACCAAATGCTAATGCAGATatgtataataaaacaataaatgctGGCTGTATAGTTTGTCAAA

Function

NR:

description
zinc finger protein 502-like

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605601.2 True 2776 mRNA 0.49 8 8510515 8516534

Neighbor

gene id symbol gene type direction distance location
ckap4 NA coding upstream 78525 8428552 ~ 8431990 (+)
LOC103021322 LOC108425378,LOC108279462 coding upstream 589291 7820355 ~ 7921224 (+)
smkr1 NA coding upstream 740272 7766846 ~ 7770243 (+)
LOC103023836 strip2 coding upstream 747392 7703112 ~ 7763123 (+)
ahcyl2 ahcyl2,LOC106609228,LOC107725924 coding upstream 822968 7633393 ~ 7687547 (+)
LOC103044524 NA coding downstream 1446 8517980 ~ 8525037 (+)
sapcd1 NA coding downstream 50763 8567297 ~ 8572672 (+)
LOC103045143 LOC108425356,LOC108425352,LOC108280014,LOC103363517,LOC107719870,LOC104927640,LOC107699203 coding downstream 272821 8789355 ~ 8882696 (+)
LOC103042395 LOC108425352,LOC108425356,LOC103363517,LOC107719870,LOC107699203,LOC104927640 coding downstream 539889 9056423 ~ 9168847 (+)
kiaa0930 kiaa0930,zgc:172139,LOC102798964 coding downstream 679598 9196132 ~ 9246664 (+)
G62805 pacsin2,LOC103038884,LOC108279716 non-coding upstream 14226 8464127 ~ 8496289 (+)
G62810 arfgap3 non-coding upstream 54604 8451492 ~ 8455911 (+)
G62807 NA non-coding upstream 76133 8433736 ~ 8434382 (+)
LOC107197604 NA non-coding upstream 135820 8370763 ~ 8374695 (+)
G62710 NA non-coding upstream 559063 7949838 ~ 7951452 (+)
G62873 NA non-coding downstream 9034 8525568 ~ 8525767 (+)
G62902 NA non-coding downstream 97684 8614218 ~ 8614523 (+)
G62945 NA non-coding downstream 440217 8956751 ~ 8956951 (+)
G62947 NA non-coding downstream 480134 8996668 ~ 8998907 (+)
G62949 NA non-coding downstream 497165 9013699 ~ 9013925 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 95476 8401840 ~ 8415039 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 1654753 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 2516521 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 2542780 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 2744730 5740555 ~ 5765785 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 9684 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 914965 9431499 ~ 9440564 (+)
G63051 NA other downstream 1130045 9646579 ~ 9650087 (+)
G63432 NA other downstream 3951516 12468050 ~ 12468902 (+)
LOC111192955 NA other downstream 4639692 13156226 ~ 13161367 (+)

Expression


Co-expression Network