LOC103022068 (asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562)


Basic Information

Item Value
gene id LOC103022068
gene name asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1846538 ~ 1861838 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606649.2
CGGGTCGGAGCTGAAGCAGGAGCGACCACGTGGTACGCTTGCCGCATTTGTAAACACGGCATGTTTATAGCTACAGTATTCAGTGTAGCGGTGTTTTAAAGAGAATTTGGTTGGTTTTAGTCGGTATTTATTAGTTTAAGTAGGAGGATGGAGGTGGAAACAGCAGTGCCGTATTTCTTCGGTGATATCGgtttCTGGTCGGAGAGGACAGAAGTACATAAGGCTGCTTATCATGGACAGGTGAGCCAGCTGCAGAGTCTAATCCAGAGCGGAGCTTCAGTCAATATTGTAGCTGTAGACTCCATCACTCCACTCCACGAGGCCGCTATTCGGGGACAGACGCAGTGTGTGAGGCTGCTGCTGGATGCTGGAGCACAGGTGGACGCGAGGAACGTGGACGGCAGCACTCCTCTGTGTGAGGCGTGTTCTGTCGGTAACTTCGAGTGTGTGCAGCTGCTGCTGGACTACGGTGCAAAGGTCAACCCTGCCCTCACTTCTCGCACCACCTCGCCACTACACGAGGCCTGCATGGGCGGCAGTTCTGAGTGTGTAAAGCTAATGATATCTAAAGGAGCCAGTCTAGAAGCCTATGATCTGTACAATGGGACTCCACTACATGTAGCCTGCGCTCACAAACACCTGGAGTGTGTGAAGGTGTTACTCAACGCAGGAGCTAAAGTAAACGCAGCCCGTCTGCACGAGACAGCACTGCACCACGCAGCCAAAGCCAACAGCTTGGAAATGATCAACCTGCTGGTGGAATTCGGCGCAAACGTGTACGTCAGAGACAAGCACGAGAAAAAGCCGGGTGACTACACCAGACCTGACACGCCGTCTGCTCACTGTCTGCAGCTTTATGAGAGTACTCCTCTTTCTCTGCAGCAGTTGAGCCGAATTGGACTGAGGACAGTACTGGGCACCAGAGCACTGCAGACTGTGACCAAACTAAACCTGCCAAATCGTATCATTCACTACCTGTGCTACCAgtgagatacacacacacacacacaacacacacacacacagcttcaaccacacacagctctcataTTCACTGGTCCAATACAGAAAACAGATTTTACTATAGGATGGAATGCACTTATCACGTCTTAACTCAGCACTTTGGTCTTTTAGTGTGCAATATTATAAATCCAGTTTGTAAAATACTTAGGAAACATAACACTACTGTAAATATTGACACAAAGAACGTATGACAGATTATACTTTAGTTCTTAGAAGTCACAGTTATTGTTAACTATGGAATCATGAAGTcatttaaaataagttatttttctCTTGTTGTTTAATTGAAACATATAGATAAATTGGGTAAAAGTGCAGACTTAAGACTTAACTATAAGGTGCAATTTAGGCGAAAATAGTAAGGTGTTGCCCTTGTTGATTTTAGTAGACTGCCCTGCACTTTTAACCAccagaaataacttttatagggttacaaatgtgaaagaactgtttgaaaaaattccaccagctaaaatacgtaattttc

Function

symbol description
asb13a.2 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB13 (ankyrin repeat and SOCS box containing 13).

NR:

description
ankyrin repeat and SOCS box protein 13-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10335 ASB13; ankyrin repeat and SOCS box protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606649.2 True 1510 mRNA 0.46 6 1846538 1861838

Neighbor

gene id symbol gene type direction distance location
LOC103022369 LOC103022369,LOC108436003 coding upstream 776 1842278 ~ 1845762 (+)
LOC103022887 gdi2,LOC108436005,LOC108279819,LOC107754057 coding upstream 5111 1826840 ~ 1841427 (+)
ankrd16 ankrd16 coding upstream 21103 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding upstream 33680 1812771 ~ 1812858 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding upstream 152572 1630873 ~ 1693966 (+)
mkrn1 mkrn1,LOC107725576 coding downstream 123035 1984873 ~ 2001629 (+)
tmem121b cecr6 coding downstream 142004 2003842 ~ 2005246 (+)
lmo3 lmo3,LOC107757261,LOC107550907 coding downstream 412529 2274367 ~ 2324260 (+)
wif1 wif1,LOC107757271,LOC107594874,LOC107725640 coding downstream 752370 2614208 ~ 2642104 (+)
LOC103029880 NA coding downstream 791767 2653605 ~ 2657494 (+)
trnay-gua_8 NA non-coding upstream 24762 1821689 ~ 1821776 (+)
trnay-gua_7 NA non-coding upstream 25203 1821248 ~ 1821335 (+)
trnay-gua_6 NA non-coding upstream 27937 1818514 ~ 1818601 (+)
trnay-gua_5 NA non-coding upstream 28383 1818068 ~ 1818155 (+)
trnay-gua_4 NA non-coding upstream 30048 1816403 ~ 1816490 (+)
G61222 NA non-coding downstream 171165 2033003 ~ 2033287 (+)
G61233 NA non-coding downstream 229023 2090861 ~ 2094032 (+)
G61236 arhgef39,LOC107725686,LOC107655603 non-coding downstream 256961 2118799 ~ 2152586 (+)
G61302 dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244 non-coding downstream 553195 2415033 ~ 2424116 (+)
G61316 NA non-coding downstream 584241 2446079 ~ 2451509 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 37608 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 365120 1445635 ~ 1481418 (+)
G61014 NA other upstream 797482 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 803222 853526 ~ 1043316 (+)
LOC103045537 NA other upstream 1221529 599659 ~ 625009 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 59557 1921395 ~ 1935499 (+)
G61575 NA other downstream 1434708 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 3878717 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 3920253 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 4120398 5982236 ~ 5993994 (+)

Expression


Co-expression Network