smkr1


Basic Information

Item Value
gene id smkr1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7766846 ~ 7770243 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606733.2
ATGACTGCAGGGAAGACAGAGGAGCACAGGGTGAAGCGTCCTCTCAGGTCTCACTGGCTGCTGGAAAAAAACAGGTCATTAAAAATGCCTACAAAAACCAAAAAGTCCAAGTCAAACAGTGCCAAACCCAAGAAGAAGAGTGAGAAGAAGAAATCAGCTAAGAAAAGGTCAGCAAGCGCCAAATCCGCTCAGCCAGAGGTGGATATACTCAGTCCAGCTGCTATGGAGAATGCctactacatttcccacaatgctgtGGACTTCCTGGAGTTCAGAGGATTTGGGTGGCCTGAGGCcacaaagaaaaaaggaaagaaatcaaagaagaaacaaaaaagcaaaaaatgaaGTTACTTCTGTggcattttcttttatatatatattttttgcattaaattGTCAATGCTGATGTAGACATAGACTCCTTACGCAGGAAGTTCACATCCTTCACTATTCCAGACCAGCAGATGGATCAACAAGGAAacctctatttttttaattcagtttgttTTTCTGAGGAATGGAACAATATGGATTTATCCACCTTATCCACTTACAGATGGATGCAGAGTGTGTGAGACATCACATTCAGCTGTGGATCTTTCTGAAGAACAGATCGCCATATAGAGCAAATTAGCTTGTAACAACTTTCTCACAATCTTTAAGAGTTTCTACAGTAAATATTTTGTAGCTGTGGTTATGGTTTGGAAGTAATGGAattatgtacttaaaatatgtatttagaaTACAGATATGTAATGTGTTTAGCCCATATTACACTATTCATGGTGGTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606733.2 True 796 mRNA 0.39 3 7766846 7770243

Neighbor

gene id symbol gene type direction distance location
LOC103023836 strip2 coding upstream 3723 7703112 ~ 7763123 (+)
ahcyl2 ahcyl2,LOC106609228,LOC107725924 coding upstream 79299 7633393 ~ 7687547 (+)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 coding upstream 135468 7620814 ~ 7631378 (+)
slc5a8 slc5a8 coding upstream 153899 7603901 ~ 7612947 (+)
arl1 arl1 coding upstream 213596 7549085 ~ 7553250 (+)
LOC103021322 LOC108425378,LOC108279462 coding downstream 50112 7820355 ~ 7921224 (+)
ckap4 NA coding downstream 658309 8428552 ~ 8431990 (+)
LOC107197608 LOC107197608,LOC108425361 coding downstream 740272 8510515 ~ 8516534 (+)
LOC103044524 NA coding downstream 747737 8517980 ~ 8525037 (+)
sapcd1 NA coding downstream 797054 8567297 ~ 8572672 (+)
G62656 lyrm5a,etfrf1,lyrm5,LOC103046475 non-coding upstream 147450 7617543 ~ 7619396 (+)
G62644 utp20,LOC107725898 non-coding upstream 164579 7598566 ~ 7602267 (+)
G62628 utp20,LOC107710084 non-coding upstream 208036 7556771 ~ 7558810 (+)
G62623 NA non-coding upstream 221136 7545388 ~ 7545710 (+)
G62608 NA non-coding upstream 291653 7420400 ~ 7475193 (+)
G62685 LOC108425379,LOC108280009 non-coding downstream 499 7770742 ~ 7786868 (+)
G62710 NA non-coding downstream 179595 7949838 ~ 7951452 (+)
LOC107197604 NA non-coding downstream 600520 8370763 ~ 8374695 (+)
G62807 NA non-coding downstream 663493 8433736 ~ 8434382 (+)
G62810 arfgap3 non-coding downstream 681249 8451492 ~ 8455911 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 911084 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 1772852 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 1799111 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 2001061 5740555 ~ 5765785 (+)
G61575 NA other upstream 4462848 3296546 ~ 3303998 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 631597 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 755975 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 1661256 9431499 ~ 9440564 (+)
G63051 NA other downstream 1876336 9646579 ~ 9650087 (+)
G63432 NA other downstream 4697807 12468050 ~ 12468902 (+)

Expression


Co-expression Network