LOC103044476


Basic Information

Item Value
gene id LOC103044476
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3467202 ~ 3471553 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671147.1
agagagagggaacggaggagacaagagagagacacaTTTTTGCACTTTTCTCTTGGTCCATCCATACAAAATAACCAGGTTAGGATATGGCCAGTTCAGTGCAGTATGCCGTTCTGCTGATGAGTCTTACTCTGGCCGTGCATAATTGTGGAGGAATATCACAGAAAACCAGGTGTGTTTCGCAACCAACATGTTTCGACTTGCTCACTTTCGAGAAAATAGTCCAGCGCATCAGGAAAGACACACCAGCTGCAGATAAAGAGAACATCCTACTGAAGAGCAGAACATTTGACAAAATTCGCAAACAGAAGTATCTTCATAGCTGTGTCTTAAGGAAAATCATTGACTTCTATGAGAATGTTCTCAATCAGACACAAGACAACTCCAATGACCATTATTACATTAGTCCACAAGGTGTGGACTTCCATCTTCAGCTCATCTCCATCATGAACAAACTGAGAAACTGCACATATAAGATGAACAGAAGATGCGAGACGTTGTATCAAAAGGCTGCACAGCAACCTAAATTGGAGGAAGCAGATATGACTCCAGATGAGGTGGCTATCCATCAGCTACAAAAACTTAACGTGGCAAGAGAAAGAATGAATGACCCGAGCATTCAGGAGAGAGCCATGGATGAACTGCAGTCTCTTCATAACTATATCCCTGGAAGAGGTTTCcgtaaaacaaagtaaaatgcGAGAAGTCATTTGAAGTGGCGCACTGAGCCTAGCAAGTTTGTGATGCAGCTTTTGTGCTTGGTACATTGATAACTAAATATGCTATCTGAGATGCTAAACTGAGCCAAATATCTTGATTAATGGATCAACTTGTTAACCATTAAAGGAGAGTCATATTCAGAGCATGTCTAAATTTCTTAAATAATGTCTTTATATTGAGATGTCCAATCTTATATGCAACCTATAAGATGATTCCACTTGTCCAATCAACTGGTTCCAATCTCATCTCACAGTTGACTCTTTATGCTCTGGCTTTGCGGGAATAGAGTTCTGCGCCCATCTTGGCTGTTCGTGGCTTTGACTGGATGCCCCTGATCTAGATATTTGAAAGCTATTTTAATGTGCTCGAATCACAGTGCATTATAAGAGTATACAAATTTGCAGAGTGGTTATTTATGCACTTCGTGAAACACGTGCTGCTGCTTGCAAATACAGGCAAACAATGAGAAATATTCCAAGCAAGCAGATGGCAAAGCAAATAAGTTCTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671147.1 True 1230 mRNA 0.41 6 3467202 3471553

Neighbor

gene id symbol gene type direction distance location
grip1 grip1 coding downstream 441335 2673173 ~ 3025867 (-)
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding downstream 798704 2661803 ~ 2668498 (-)
lemd3 lemd3,LOC106576661 coding downstream 854388 2600412 ~ 2612814 (-)
msrb3 msrb3,LOC107725596,LOC107757268,LOC107587134 coding downstream 869535 2574909 ~ 2597667 (-)
LOC103031987 NA coding downstream 995139 2466202 ~ 2472063 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding upstream 223634 3695187 ~ 3703230 (-)
LOC103030485 NA coding upstream 362779 3834332 ~ 3838502 (-)
LOC103036484 NA coding upstream 383989 3855542 ~ 3865736 (-)
LOC103036181 LOC108438810,LOC108279896 coding upstream 397185 3868738 ~ 3889640 (-)
LOC103029733 LOC108438795 coding upstream 428648 3900201 ~ 3915629 (-)
G61611 NA non-coding downstream 68432 3398558 ~ 3398770 (-)
G61610 NA non-coding downstream 69430 3396720 ~ 3397772 (-)
G61609 NA non-coding downstream 71345 3394778 ~ 3395857 (-)
G61606 NA non-coding downstream 78331 3388633 ~ 3388871 (-)
G61595 NA non-coding downstream 124204 3342692 ~ 3342998 (-)
G61630 NA non-coding upstream 40648 3512201 ~ 3515815 (-)
G61670 rap1b,LOC106576640,LOC107695907 non-coding upstream 91218 3562771 ~ 3642517 (-)
G61746 NA non-coding upstream 316549 3788102 ~ 3854961 (-)
G61754 NA non-coding upstream 375475 3847028 ~ 3851116 (-)
G61760 NA non-coding upstream 465131 3936684 ~ 3937790 (-)
G61587 NA other downstream 151963 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 932849 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 1009076 2454547 ~ 2458126 (-)
G61251 mkrn1 other downstream 1473344 1984478 ~ 1993858 (-)
mdm1 NA other upstream 57967 3529520 ~ 3548702 (-)
G61676 NA other upstream 179292 3650845 ~ 3658268 (-)
cdpf1 cdpf1,LOC107695897 other upstream 369048 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 863565 4335118 ~ 4426156 (-)
G61942 NA other upstream 1150660 4622213 ~ 4622577 (-)

Expression


Co-expression Network