LOC103042080 (LOC108425318)


Basic Information

Item Value
gene id LOC103042080
gene name LOC108425318
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8587268 ~ 8590316 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671151.1
tatatataaacctaaGCTAAGCACACCCACAGTTACATAGCCTGTAGACATGTAGAAATGACTGGAGAGAGGAAGGACCTGTTGACTTAAgctccacactgccaaaaagaGCCTCCGGATCAAGAGCTATCTATGATTTACATCAACTGCAGGAACACACCGGGCTCGGATAACAGAGACCTGCCAAAAATGGCTGCTGACCACTCGCCCGGCTCCTACACACGGCCTCTGGCCTTCAGCTTATCAGTGGACCACCAGTGCCCCCCGTTCAGAGACGCTTTGAGTCTACCGCTCCACTTTGAACAGACTTACCTGGAGCCAGTGTACAGCCACAGGTATAACGGACACTTCTCCTACCTGCCCTTCCCCGGCCACCTGGCCATGTACGACTACTCCTTTGAGCCGGCCTTCATTCGCAAACGAAACGAGCGCGAGAGGCAGAGGGTGAGGTGTGTGAACGAGGGATATGCGAGACTGCGAGAGCACCTGCCCCAGGAGTTCGAGGATAAAAGACTCAGCAAGGTGGAGACACTTCGAGCGGCCATCAGCTACATCAAACACCTGCAGAACCTTCTGGAGCTGCGATTGCCTGAAGCgattgcagagctttcagccgGGAGCGAGAGAGGGCCTGCGGTCAGTACGCAGCTCCCAGAGTGTAACAGTGATGGAGAGTCTAAACACAGCCTGAGTGACCACGGGGAAACCTGCTACTGAACAGACTGCGCTGTGCAGATGCTGGACATGCTAATGGCAATGATGCTAATGTGCCCATAATGATCTGCAGTATTGAACTGTTGAACAGGAACTGTATGACTGGAGAACGACAGTCTTTGTGAAGTAATTTTGAATGTTGTGAATGACTGTTTGGACAATTtagggcagtttcccagacagggattaagcataGTCTTGGactatacagcattttaaatggagattttacATTGACAGGAATATATAGGCCAGGTTTAATCCTGTCTCAAAAACCGACCCAATATATTTGTGGGGATTTCTTACCAATAACAATCAACAGacattttaacccttttagatcctgcatccattacaattgACAACACTTTTCCCAATgctttgttgcacataacactaattgaggactgtttttaatcagaataggctataaacaagccaaagaaaaggttt

Function

NR:

description
PREDICTED: achaete-scute homolog 4-like

GO: NA

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671151.1 True 1167 mRNA 0.48 2 8587268 8590316

Neighbor

gene id symbol gene type direction distance location
LOC103041774 NA coding downstream 33703 8542470 ~ 8553565 (-)
ttll1 ttll1,LOC102779306 coding downstream 79689 8498224 ~ 8507579 (-)
LOC103038884 pacsin2,LOC103038884,LOC108279716 coding downstream 90875 8464126 ~ 8496393 (-)
arfgap3 arfgap3,LOC108279714 coding downstream 124714 8447310 ~ 8462554 (-)
terf2 NA coding downstream 142980 8415862 ~ 8444288 (-)
LOC103045460 NA coding upstream 580675 9170991 ~ 9192565 (-)
LOC103042700 LOC108425355,LOC108279935 coding upstream 633398 9223714 ~ 9227248 (-)
nup50 nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009 coding upstream 662021 9252337 ~ 9266879 (-)
arhgap8 arhgap8 coding upstream 844798 9435114 ~ 9459694 (-)
fbln1 NA coding upstream 1260614 9850930 ~ 9864019 (-)
G62858 NA non-coding downstream 152872 8433715 ~ 8434396 (-)
G62832 NA non-coding downstream 253945 8332508 ~ 8333323 (-)
G62821 NA non-coding downstream 307274 8277685 ~ 8279994 (-)
G62748 NA non-coding downstream 635834 7949835 ~ 7951434 (-)
G62732 NA non-coding downstream 776486 7810553 ~ 7810782 (-)
G62907 NA non-coding upstream 56569 8646885 ~ 8647296 (-)
G62950 NA non-coding upstream 430173 9020489 ~ 9020985 (-)
G63034 NA non-coding upstream 816089 9406405 ~ 9409548 (-)
LOC103022044 NA non-coding upstream 824727 9415043 ~ 9418822 (-)
G63041 NA non-coding upstream 891884 9482200 ~ 9482517 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 413452 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 967836 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1727598 6787342 ~ 6859670 (-)
G62484 NA other downstream 1849320 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1028345 9618661 ~ 9622788 (-)
G63217 NA other upstream 1724483 10314799 ~ 10411231 (-)
G63516 NA other upstream 3730239 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 3775152 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 4215655 12805971 ~ 13027498 (-)

Expression


Co-expression Network