LOC111192874


Basic Information

Item Value
gene id LOC111192874
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15564017 ~ 15571205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671152.1
CACAGAGGCGCACTGACGAGAAGCGCTCAGAAAGAGCTGCGGAGTGAAACCATATCAAggatttctgtattttaaacatagaatatttcattatttcacaGAGATAAGACATACAGCGACGTTAGGAAGAGAAAACAGCGAGCCGGCGAGTTCAGCTCCGTGCAGGAAACCCAGAACACCCCACAGAGTTACCGGGATGTGCGGCACTGAAATGGGTCTGAGCCACGAAGGCAGCCTAAATCAGCTTGGTGGGAGGTTTTTGAATGGACGACCTCTGCCTTCACACACAAGGAGGATGATGATCAAGCTGGCCTCAGAGGGTGTGCGTCCGTGCCACATTTCCAGAATTCTGAAGGTGTCCAGTGGCTGTGTCAGCAAGATTCTGCGCTGGTACTGGCGTACTGGACATGTGGGACCCAAATCCACAGGAGGCAGCAGACCACGGCTCCTCACACCTCAGGTTATCTCGACTATAGCTCGGTACAAGCGCTACAGCCCATCACTCTTCGCCTGGGAGATCCGCGAAAAGCTCTCAGCAGAGCATGTCTGCGGAGCAGACAAAGTTCCTAGTGTATCTTCTATTAATCGCATTCTAAAGAAGCTCCAGCATAACCAGGACAAGGAAAGAAACACATGTGAAGGGAATAGATCTGATAAAACAGGAGATGAGAGGCTGAATTTCTACAATTTTGGTGAAATGGATCAACAGCCAGCGGCCAGCAACCTGCAAAGCACTCAGCAGCGCAACAGGAAAAATTTCAGCCCTgaacaatgtaaaatattagaGAAAGAATTTCTTTGTGGACAGTATCCAGACTTGTTTGCTAGAGAAAAGCTTTCTACAGACACCAATCTATCTCAGGACACCATAAAGgTGTGGTTCTCAAACAGACGAGCAAAGATGAGACGGGAGATGAAGGCAGAAGAGATTGGCTGGCCTTCACATGGTCTGGTGCCGCCTCATTCTCTGGGAAGCGCGTCTGTTCCCCTCTCTCTGTCGACGAACTGGCTCTGTGAGAGAACAGCGCTGCCAGTGGCGAGTGATTTGGACAACAGAAGTTCACTGGCTCCCTTTCCAGTGGCCCAGAATCCTGACAGCAGCCCACTCTCACTGGCTCATTGCAGCTCGAATATGAGAACAGGCTTCCCGTTGGATTATCGCTTGGATCGGGCGAACATGCTCCGCTCTcagcagagagaggaagagagcgcATACGGCCCGGCTCATTTCACTGAATGGGCGGCTCATCCTTCATTCGCTGGGCAGTATGTTTGACTGGGAGGAATTCATGAGCAGAGATGACAGATTTATGGCTAAGTCTTTAAGAGTTATAGAGACATTTTGAGATGTTTCTGTAACTCTTTCAGAATACTGaaagatacttttttttgtaacagcAGGGGgcagcaaagcaaaaaaaataaaattactttgGTTTTTCATAgttcagttttacacaaaactgacagttttattttaatcaaatgtaaactttttgaAGTTCTCAATGAAttcattgaataaaaaaaaaatcctaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671152.1 True 1540 mRNA 0.47 8 15564017 15571205

Neighbor

gene id symbol gene type direction distance location
LOC103045633 lrrc4.1,LOC108432552,LOC107699068,LOC107557314,LOC107732976,LOC105904105 coding upstream 137230 15422001 ~ 15426787 (+)
fam200b NA coding upstream 563435 14997118 ~ 15000582 (+)
LOC111192957 NA coding upstream 836662 14721032 ~ 14727355 (+)
taf3 taf3,LOC107748456,LOC107555823,LOC107675973 coding upstream 1367471 14102939 ~ 14196546 (+)
atp5c1 atp5c1,LOC107728502,LOC107748457 coding upstream 1465471 14090332 ~ 14098546 (+)
ccdc87 NA coding downstream 333137 15904342 ~ 15923062 (+)
LOC103046551 LOC108432559 coding downstream 352521 15923726 ~ 15953932 (+)
LOC103027800 LOC108432561 coding downstream 426996 15998201 ~ 16101524 (+)
LOC103046856 LOC108432562,LOC108279529,LOC107757284,LOC107581848 coding downstream 541654 16112859 ~ 16141399 (+)
LOC103047366 LOC108415391 coding downstream 647623 16218828 ~ 16314999 (+)
G64087 NA non-coding upstream 374048 15147026 ~ 15189969 (+)
G64091 NA non-coding upstream 440796 15123011 ~ 15123221 (+)
G64088 NA non-coding upstream 472824 15090971 ~ 15091193 (+)
G64086 NA non-coding upstream 491218 15072539 ~ 15072799 (+)
G64083 NA non-coding upstream 506626 15057131 ~ 15057391 (+)
G64141 NA non-coding downstream 55371 15626576 ~ 15629978 (+)
G64144 NA non-coding downstream 93963 15665168 ~ 15672932 (+)
G64159 NA non-coding downstream 173876 15745081 ~ 15749573 (+)
G64205 NA non-coding downstream 384804 15956009 ~ 15956216 (+)
G64233 NA non-coding downstream 573080 16144285 ~ 16144718 (+)
G64015 NA other upstream 818935 14744735 ~ 14745082 (+)
gata3 gata3,LOC107555822 other upstream 1321783 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 2402650 13156226 ~ 13161367 (+)
G63432 NA other upstream 3095115 12468050 ~ 12468902 (+)
G63051 NA other upstream 5913930 9646579 ~ 9650087 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 824121 16395326 ~ 16426623 (+)
G64289 NA other downstream 868015 16439220 ~ 16442449 (+)
G64431 NA other downstream 1181838 16753043 ~ 16753560 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 1262085 16833290 ~ 16888195 (+)
G64449 NA other downstream 1301882 16873087 ~ 16875941 (+)

Expression


Co-expression Network