LOC111192875 (LOC108437882)


Basic Information

Item Value
gene id LOC111192875
gene name LOC108437882
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16696081 ~ 16707075 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671153.1
GCGGTCACGTGTGGCTGAATCGACCGCAGTATGGCGCCAAACTCAAACCTGAGGTAAACTCAGGCTAACAAACAGAAGCCAACTCGTAGCTTTTAATCGggtgttttacacattttaaacctATTTTCTCCTCAAAAACTTTGTTCTCACATCGTCTTCAGCCTTATTTATTCGATTAGGAGCAGAATGTTTCGCTGTTTTGATGTAACGTCGTCTTTACAGGACTGTGCCAGGTCCCTGCGGCAAAGCCTTCGCTCCAGAGTCTCTGAAAAGGAGAAGAGGGCCATGGCCCACAGTGCCAAGATAGACCAGGATCTGGGAGAACGTGGCAGACAGGAGGCAAACGTGGTGAAGATCCTTCTTCTGGGGACTCCAGAGAGTGGTAAAAGTACCCTGCTGAAGCAGATGAAGATAATCTACAGCCGGGGTTTTACTAAAGACGAGCTGGTCAGCTTTgcgCCTGCGGTTCTGGACAATCTCCTGACGTCAATGAAGTGTGTCCTGCATGGTATGGGTGTGTTACGGATCAATCTGTCTAACAGGAAGAATAAGGCTCACGCTCGCTGCGTTCTGAAGTGTGAGAGCTGCGTTGGGGAGGACGGGGAGCTGATACCCTTCGCGGCGTTCGCTTTCTGCAGCTTGTGGGGCGATCAGGGGGTTCGGCTGGCGGCCGCCAAGGGCCACGAGTACCAGCTTAACGATTCGGCGCTTTATTTCTTTGAGAATATGGGCCGAATTATCGCTCCAAACTACGTCCCAACTGAAGCAGATGTCCTGAGGGTGCGAGTGAGGACCAGAGGCATCATCGAAACTCAGTTCAGCTACAAAAACTCCATTTACAg

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(o) subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671153.1 True 842 mRNA 0.51 6 16696081 16707075

Neighbor

gene id symbol gene type direction distance location
LOC103027149 LOC103027149 coding downstream 35574 16654113 ~ 16660507 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding downstream 118265 16529205 ~ 16577816 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding downstream 226724 16459740 ~ 16469357 (-)
scaf11 NA coding downstream 245315 16431300 ~ 16450766 (-)
LOC111192960 NA coding downstream 344368 16347559 ~ 16351713 (-)
LOC103039070 NA coding upstream 188505 16895580 ~ 16945665 (-)
LOC103042974 LOC108437161 coding upstream 338439 17045514 ~ 17096825 (-)
cep112 cep112 coding upstream 396220 17103295 ~ 17307076 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 1014054 17721129 ~ 17731699 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding upstream 1075677 17782752 ~ 17797809 (-)
G64422 NA non-coding downstream 28842 16665021 ~ 16667239 (-)
G64418 zmp:0000000711,LOC108411497 non-coding downstream 47459 16646178 ~ 16648622 (-)
G64382 NA non-coding downstream 181213 16508936 ~ 16514868 (-)
G64380 NA non-coding downstream 206150 16489509 ~ 16489931 (-)
G64321 NA non-coding downstream 327691 16312131 ~ 16368390 (-)
LOC111192962 NA non-coding upstream 4998 16712073 ~ 16714049 (-)
G64479 NA non-coding upstream 56135 16763210 ~ 16766262 (-)
G64485 NA non-coding upstream 97486 16804561 ~ 16890783 (-)
G64491 NA non-coding upstream 170541 16877616 ~ 16892465 (-)
G64505 NA non-coding upstream 198328 16905403 ~ 16906021 (-)
G64387 NA other downstream 110434 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 828286 15671306 ~ 15867795 (-)
G64060 NA other downstream 1701249 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1703351 14990229 ~ 14992730 (-)
G64034 NA other downstream 1909932 14785321 ~ 14786149 (-)
G64492 NA other upstream 175260 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 828221 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 971739 17678814 ~ 17689312 (-)
G64886 NA other upstream 1221432 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 1917800 18624875 ~ 18712520 (-)

Expression


Co-expression Network