LOC111192879


Basic Information

Item Value
gene id LOC111192879
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21989255 ~ 21990070 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671154.1
GTTTGGTGGCCTTAGTAGTGGCATTACCAACAAACGCAAGTTTGTTGAGTGGCAGCATGTGGCTGCAGCAGTAAACAATGTGAGCTCCACAAGCCGAACTATTGCAGAGGTAAAGAAAAGTGGTCAGATTTAAAAGTCGACGCAAAGAAGCAAATTGCtttgcacagaaaaaaaattactgcaACTGGAGGAGGAAAGGCTACACCTGCACCGTCTCTTTTTCACGAGAGGATGGCTTCAATAATTGGGGAACCCCTGTTAAGCGGAGTGGTGAGTGAGAAGGAGGGTGACACGGACTTAGCTGATGAACCCTGCACAGAAGAACCAGatggGACTGTGGATGTTGAGAGTGGCCATGAAGTGGAGGACTGCCAACCCGGCCCCAGCGGCATCTCCGGTGCCGCTCATGCCTCCAGCGCAGTCTCCAGTGCTGCTCATGCCTCCAGTAGTGTCTCCAGTGCCGCTCATGCCTCCAGCGGAGTCTCCAGTGCTGCTCATGCCTCCAGTAGTGTCTCCAGTGCCGCTCATGCCTCCAGCGGAGTCTCCAGTGCTGCTCATGCCTCCAGTAGTGTCTCCAGAAAGCGTGTGCATCATTGTAGCGTCTCTCTTGTCTGCTATGTGGGTTGGGGAATGGCGTAAGAAGCCAGCGCTGGAGGGGATAGCCACTGTAAAATAGTGCAGAAATAAGGCTGCTAATAGATTATTGTATAAAACTGCTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671154.1 True 722 mRNA 0.52 2 21989255 21990070

Neighbor

gene id symbol gene type direction distance location
LOC103040999 LOC103040999 coding downstream 18613 21965977 ~ 21970642 (-)
LOC103040407 NA coding downstream 111553 21823896 ~ 21877702 (-)
mrps10 NA coding downstream 171107 21809285 ~ 21818148 (-)
LOC103044186 NA coding downstream 602796 21374232 ~ 21386459 (-)
nav3 nav3 coding downstream 632747 20983152 ~ 21356508 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 258817 22248887 ~ 22273098 (-)
LOC103043373 LOC108435080,LOC108279430,LOC107729145,LOC107656392,LOC107590530,LOC107583931,LOC107708018,LOC107658953 coding upstream 315135 22305205 ~ 22352523 (-)
pde3a pde3a,LOC107707962 coding upstream 373084 22363154 ~ 22401341 (-)
ada2 cecr1,LOC108442796 coding upstream 921117 22911187 ~ 22930186 (-)
LOC103026244 atp6v1e1b,atp6v1e1,LOC103026244,LOC108442797,LOC107658907,LOC107583987,LOC100708725 coding upstream 940152 22930222 ~ 22937099 (-)
G65963 NA non-coding downstream 23559 21964958 ~ 21965696 (-)
G65950 NA non-coding downstream 28149 21959297 ~ 21961106 (-)
G65949 NA non-coding downstream 30337 21957494 ~ 21958918 (-)
G65948 rab21,zgc:154045,LOC106609839,LOC107690748,LOC107687573 non-coding downstream 32986 21932824 ~ 21956269 (-)
G66004 NA non-coding upstream 141018 22131088 ~ 22131593 (-)
G66022 NA non-coding upstream 171601 22161671 ~ 22162400 (-)
G66052 NA non-coding upstream 289027 22279097 ~ 22279414 (-)
G66080 bcap29 non-coding upstream 303027 22293097 ~ 22298282 (-)
G66074 NA non-coding upstream 309411 22299481 ~ 22361569 (-)
G65803 gen1 other downstream 304427 21629958 ~ 21684828 (-)
ost4 NA other downstream 415056 21545418 ~ 21574199 (-)
llph llph other downstream 2189653 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2383530 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2618547 19305987 ~ 19370708 (-)
G66081 bcap29 other upstream 300615 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1063203 23053273 ~ 23160179 (-)
G66619 NA other upstream 2517764 24507834 ~ 24508281 (-)
G66642 NA other upstream 2669954 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3526445 25516515 ~ 25530980 (-)

Expression


Co-expression Network