LOC111192881


Basic Information

Item Value
gene id LOC111192881
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24384964 ~ 24388696 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671155.1
agcTGGTCCAGAGGGTCTTAGCTTTTTTGGTCCAGATGCAGTCACCGTGGGAGTGCCCTCTAGCATTGAATGCTTTGCTCAGTGTTCACCTGAATGCAATTACACGATTGGTTTTGATGGCCAGAGTTTGGAAGGCAATGAGATGGCGTTTACTTTAAAGCAATGGGTGAGCTCCATAACAGTGACCTGCACAGCCAAAAACCCTTCTACACAAAAGTCCTCCAGCATCAGCAAGACTCTACAGATATTGGAGGGACCAGTGAACGTTTCCATCAGTGGCCCATTTAATATTACTCCTGGAGAAAGTCAGCGGTTTCTATGCAGTGCAACCTGCAGACCCTCCTGTAACTACACCTGGGTGGTTGATGGAGAGTCAGTTGCtgggtctggaaatgaggtgatCATCAAGCAGTCTATAGAGGCCACCGCAGAGACCCTCGTCTGCCAAGCCACAAACAGCATATCTGGATTGTTTGTCACAGCAATCCATGAATTCAGTTCTTCAAgagACTCTGCTGGGTCCTCATCAGAGAAAATGGAGCTGCTGCCAAAACTGCTGTTTTCATGCATGATGTCTGTTTTCTTATTAGTAGTTATTCCATCATGATCCAGCAGAGGGAATTAAAGCTGGTGATGGTGGTCCTTTccttttaaaattacataaagGTCTACTGTCTAAAGGTTCTTCTTGgttctaaaataaagaaatagagtTAAAGCTGCTTGATGAACAAATGTGTactgttaaaacaaaaaaagtgactTAGGACTTTTAGGGTtcttaaaaaatta

Function

GO: NA

KEGG:

id description
ko04971 Gastric acid secretion

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671155.1 True 792 mRNA 0.43 3 24384964 24388696

Neighbor

gene id symbol gene type direction distance location
atp23 atp23,LOC106609469,LOC106576246 coding downstream 17391 24362007 ~ 24367573 (-)
slc16a7 slc16a7,LOC108248566 coding downstream 116515 24230215 ~ 24268449 (-)
LOC103022829 NA coding downstream 366247 24001682 ~ 24018717 (-)
LOC111193004 NA coding downstream 385464 23995282 ~ 23999500 (-)
LOC103022521 NA coding downstream 392151 23961974 ~ 23992813 (-)
LOC111192914 NA coding upstream 3315 24392011 ~ 24397445 (-)
LOC103035956 mapk12b,LOC103035956,LOC108442322,LOC108279513,LOC107656379,LOC107579544,LOC107710136,LOC103459704 coding upstream 16468 24405164 ~ 24414312 (-)
LOC103035641 mapk11,LOC103035641,LOC108442323,LOC108279456,LOC107579565,LOC107725929,LOC107656380,LOC107583972,LOC105020226 coding upstream 28803 24417499 ~ 24440903 (-)
LOC107197568 NA coding upstream 55853 24444549 ~ 24447478 (-)
LOC103035119 NA coding upstream 79575 24468271 ~ 24478895 (-)
G66602 rpap3 non-coding downstream 4382 24373901 ~ 24380582 (-)
G66601 rpap3 non-coding downstream 11684 24368438 ~ 24373280 (-)
G66600 NA non-coding downstream 16608 24368113 ~ 24368356 (-)
G66509 NA non-coding downstream 31261 24353301 ~ 24353703 (-)
G66496 NA non-coding downstream 94174 24290588 ~ 24290790 (-)
LOC111192882 NA non-coding upstream 58982 24447678 ~ 24452700 (-)
G66623 NA non-coding upstream 123464 24512160 ~ 24512552 (-)
G66627 NA non-coding upstream 143575 24532271 ~ 24533872 (-)
G66646 NA non-coding upstream 359767 24748463 ~ 24748736 (-)
G66651 NA non-coding upstream 397844 24786540 ~ 24786761 (-)
dusp16 dusp16 other downstream 1224785 23053273 ~ 23160179 (-)
G66081 bcap29 other downstream 2093282 22290685 ~ 22291682 (-)
G65803 gen1 other downstream 2700136 21629958 ~ 21684828 (-)
ost4 NA other downstream 2810765 21545418 ~ 21574199 (-)
llph llph other downstream 4585362 19795154 ~ 19799602 (-)
G66619 NA other upstream 119138 24507834 ~ 24508281 (-)
G66642 NA other upstream 271328 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 1127819 25516515 ~ 25530980 (-)
tmem258 NA other upstream 3644005 28032701 ~ 28035961 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other upstream 3732564 28121260 ~ 28132788 (-)

Expression


Co-expression Network