LOC107197032


Basic Information

Item Value
gene id LOC107197032
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 586693 ~ 590105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671157.1
tttgactctgTAGAGAAACACAGTCTGCAGTATTTGTACACACTGCGTTCAGCACTTGAGGATGAGCCAGAGTTTGAGATAACGACAGTGTTTGATGGTCTCATCATCTCTCACTGTAAGAGCCCCCGTTTTGTAGATCATTCCAGAGAGGACTGGATCAGTCAGACCTTCAGTAATGCAGAGTGGAAGAACAGAGATCTGTTCTGTGAGGGTGAATATTACCTTCACAATACTCTGAAGAAGAAGATTGAGGATGTAATCAACACAACAAATGgaatcatccagagagagagaagctgtaCTGAAGATGATTCAGTAGTTCGTATGAGTGACAGGTGGGGGGTCAATGGTGAAGATTTTCTAACTCTGGATCCAAAAACTCTGAAGTGGAGTTCTGACTCTCCTCTGGCAGCACCAGTACAATCAGACTGGAACCAGATGAAGTTCATGACTCCATCACTGAAGGACTTTAAGCTGAATCAGTGTAAACCATCTCTGATgaagctgaagaagaagaaagaggagtACCTACAAGAAAACATGTatcctaaaatatatatttttggcaaGTCTTCTCACGATGGAGACGCAGTATCTCTGAGATGTTACATCAGTCATAAGTATTTATCAGGAGTTCGTGTTCGGCTGACTCTGGATGGAGTGGTAGTGGATAACGTTAACATCTCCAGTCCAGCTCCAAATATGGACGGATCAGTTCAGATTAGACTTGAGACGAAGACTAACATTAAAGAGCCTAACCGCTATCACTGTGTAGTGGACGCAGATTATCTGCACATTTTTACAGCATGGGATGGACAGACATTGAgtcaaaaaagtgatttttataaaCGTGGGATGTTGGTCATGTCATGGATTCCTCTTATCATGCTGTTAATCACTCTTGGAACAGCATGGAGTCTGGCTGCGTTTCTTCAAGGTTGCTCCTTCATTTGTAAAAAAGCTAAACGTCAGAGGAATATTAATATCTCCAACGTGAACTTCTCTATTTACGTTGCAACTGAAGAAGAATTTAGAAGAATggctgaagatgatgatgagtTCCATGGACCTGTATTCCTAAGAGAATGTGCCTCTGGACTATAA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671157.1 True 1104 mRNA 0.42 5 586693 590105

Neighbor

gene id symbol gene type direction distance location
LOC103022716 NA coding upstream 12192 570221 ~ 574501 (+)
LOC111192919 NA coding upstream 21383 559026 ~ 565310 (+)
LOC103031583 NA coding upstream 391849 192192 ~ 194844 (+)
braf braf,LOC107725591 coding upstream 407683 148669 ~ 179010 (+)
LOC103021355 LOC103021355,LOC108426405,LOC108279735,LOC107757248,LOC107694301,LOC100694258,LOC107590616 coding downstream 24008 614113 ~ 621742 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding downstream 159776 749881 ~ 780797 (+)
LOC111192892 NA coding downstream 219129 809234 ~ 809997 (+)
LOC111192924 NA coding downstream 250932 841037 ~ 844690 (+)
LOC111192895 NA coding downstream 303264 893369 ~ 912312 (+)
G60910 NA non-coding upstream 116004 455836 ~ 470689 (+)
G60903 NA non-coding upstream 309371 277010 ~ 277322 (+)
G60983 NA non-coding downstream 26669 616774 ~ 623435 (+)
G60996 NA non-coding downstream 150586 740691 ~ 740898 (+)
G61011 NA non-coding downstream 210544 800649 ~ 800870 (+)
G61016 NA non-coding downstream 243882 833987 ~ 835273 (+)
G61023 NA non-coding downstream 251490 841595 ~ 949084 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 28113 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 439919 144189 ~ 146774 (+)
LOC103045537 NA other downstream 9554 599659 ~ 625009 (+)
G61014 NA other downstream 216460 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other downstream 263421 853526 ~ 1043316 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 855530 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 1124712 1714817 ~ 1808930 (+)

Expression


Co-expression Network