LOC111192896


Basic Information

Item Value
gene id LOC111192896
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 912891 ~ 914305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671160.1
TGTGGTGATCTGTGGGACATCAGGGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGGTCGGCGCTGAGTGCTAATAGAAGTGCTGCTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGATCCACACTGACTGCTCCCACAGCGCTGGAGTCACCTGTGCAGACACATTTGTGAGTTTAACTTTTTCATCCAAATCAACTACAAGTTACACCACAGTTCCAGTACAGCTAACAGAGATGCAGACAGCCCCTCCTTCAAAAAATCCATCATCAAATTTTCCATACATCTATCCAGTGTCTCTCCTGGTTCTGGGATCTGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGTGATCTCTAAGAGGAGGAAGAATAAAGTGACTGAGGCAGTCTATGAAGAGATTGACTATAAACGTGTCAATAACAGATATACTAAAAGAGTTCAGGTCAACAGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671160.1 True 549 mRNA 0.46 5 912891 914305

Neighbor

gene id symbol gene type direction distance location
LOC111192895 NA coding upstream 579 893369 ~ 912312 (+)
LOC111192924 NA coding upstream 68201 841037 ~ 844690 (+)
LOC111192892 NA coding upstream 102894 809234 ~ 809997 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding upstream 132094 749881 ~ 780797 (+)
LOC103021355 LOC103021355,LOC108426405,LOC108279735,LOC107757248,LOC107694301,LOC100694258,LOC107590616 coding upstream 291149 614113 ~ 621742 (+)
LOC111192897 NA coding downstream 4869 919174 ~ 927544 (+)
LOC111192898 NA coding downstream 15305 929610 ~ 943921 (+)
LOC111192900 NA coding downstream 86582 1000887 ~ 1007827 (+)
cracr2a NA coding downstream 482893 1397198 ~ 1404499 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding downstream 716568 1630873 ~ 1693966 (+)
LOC111192928 NA non-coding upstream 54382 853711 ~ 858509 (+)
G61016 NA non-coding upstream 77618 833987 ~ 835273 (+)
G61011 NA non-coding upstream 112021 800649 ~ 800870 (+)
G60996 NA non-coding upstream 171993 740691 ~ 740898 (+)
G60983 NA non-coding upstream 289456 616774 ~ 623435 (+)
LOC111192927 NA non-coding downstream 595 914900 ~ 916812 (+)
LOC111192923 NA non-coding downstream 133492 1047797 ~ 1049056 (+)
LOC111192863 NA non-coding downstream 135825 1050130 ~ 1051090 (+)
G61085 NA non-coding downstream 591038 1505343 ~ 1505817 (+)
G61100 NA non-coding downstream 694820 1609125 ~ 1621557 (+)
LOC103045537 NA other upstream 287882 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 354311 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 766117 144189 ~ 146774 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 531330 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 800512 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 1007090 1921395 ~ 1935499 (+)
G61575 NA other downstream 2382241 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4826250 5740555 ~ 5765785 (+)

Expression


Co-expression Network